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Showing: 41 - 50 of 83 results
  1. What's Your Organism? Expanding Genomic Tools via the NSF EDGE Program

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    Blog Post
    ...which don’t like foreign DNA at all (maybe because they have only 1,700 genes total). Hydra (Celina Juliano...of molecular biology, many scientists do a lot of DNA work but never get to actually manipulate the organism...such that the two plants share RNA, proteins, and DNA. Euprymna scolopes (Joshua Rosenthal) The Hawaiian...reproductive life cycles. One can inject plasmid DNA in the eggs to get transgenic animals. They might...
  2. 3 Tips to Improve HDR Efficiency for CRISPR Editing in Human Cells

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    Blog Post
    ...introducing double stranded breaks (DSBs) into genomic DNA in many cell types and often results in biallelic...homology-directed repair (HDR), a distinct cellular DNA repair pathway. Accomplishing this usually involves...involves simultaneously introducing a homologous DNA repair template, such as a sin­gle-stranded oligodeoxynucleotide...at all, such as when you are editing a non-coding DNA region? To this end we developed a technology called...hundred. From these two steps, you’ll be screening a total of a few hundred clones - Still better than 10.000...
  3. Mycoplasma Contamination: Where Does It Come From and How to Prevent It

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    Blog Post
    ...mycoplasma DNA appears in the form of small clusters, apart from the cellular DNA. Fluorescent DNA staining...staining is another DNA staining alternative. This method uses DNA stains like DAPI and Hoechst 33258 to stain... For this task, you can use PCR based detection, DNA staining, fluorescent tagging, agar plating, etc.... then be detected by a luminometer. Non-specific DNA stains can be added in the infected culture medium...stain all DNA. Some amount of expertise is required in this process because result interpretation might...due to longer incubation periods and affect the total cell viability. Conclusion To sum up, it is always...
  4. 15 Years of Addgene: The Top 15 Plasmids

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    Blog Post
    ...How many times have these plasmids been shared in total? Just over 49,000 times! Their long-lasting popularity...D10A nickase mutant) to nick, rather than cleave DNA. Find pSpCas9n(BB)-2A-GFP (PX461). pSpCas9(BB)-2A-Puro...
  5. New Tool for Lineage Tracing: The ClonTracer Library

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    Blog Post
    ...clones that are present at less than 0.1% of the total population are easily be missed. The ClonTracer ...vectors with roughly 73 million semi-random, 30 bp DNA barcodes that are integrated into target cells' genomes...
  6. CRISPRainbow and Genome Visualization

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    Blog Post
    ... Some researchers have used fluorescently tagged DNA-binding proteins to label certain loci, but this ...depending on the hairpin combination bringing the total number of individual colors to 6. A gRNA with all...
  7. Recombinase-based State Machines Enable Order-dependent Logic in vivo

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    Blog Post
    ...state machines (RSMs), which take on a particular DNA-sequence configuration (state) based on the identity...defined by the sequence within a prescribed region of DNA termed the “register”. Each chemical input to an ...result of their recombination is the excision of the DNA between the sites (Fig. 1B below). Alternatively,...result of their recombination is the inversion of the DNA between them (Fig. 1A below). In the absence of extra...interrogate state with qPCR. The re-arrangement of DNA segments in each state of a register enables the ...instructional text file. What's available at Addgene? In total, we constructed and tested eight two-input RSMs ...
  8. Hassle-free 96-well Format Epitope Tagging Using Cas9 Ribonucleoprotein

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    Blog Post
    ... how proteins interact with one another (or with DNA) to perform diverse biochemical tasks in the cell...-IN” bioinformatics tool for guide RNA and donor DNA design, and implemented our optimised protocols into...to cells: a guide RNA, Cas9 protein, and a donor DNA that contains the tag sequence flanked by homology...CRISPR experiments (in collaboration with Integrated DNA Technologies, USA). These synthetic RNAs can also...csRNP complex formation, a single-stranded donor DNA (ssODN) that contains the tag-encoding sequence and... annealed cr:tracrRNA, and single-stranded donor DNA. The success of the epitope tagging experiment depends...tag-positive cells (tag ICC) as a percentage of total cells in the field (DAPI). Using the ICC assay as...
  9. Cpf1 Update: Comparison to Cas9 and NgAgo

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    Blog Post
    ...distant cousins of well-known Cas9. Cpf1 cleaves DNA in a staggered pattern and requires only one RNA ...Kim et al. Kim et al. also compared the ratio of total off-target to on-target modification for AsCpf1 ...Our CRISPR Guide Pages Check Out MpAgo from the Doudna Lab Find Validated gRNAs ...
Showing: 41 - 50 of 83 results