We narrowed to 562 results for: BLI
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TypeBlog Post...instances. If your poster material is nearing publication, consider uploading your work to a preprint server... this is being used, it’s best to turn to an established social media platform. During the conference ...something on social media. If someone is presenting unpublished data they may ask the audience to not share their...
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CrispyCrunch: High-throughput Design and Analysis of CRISPR+HDR Experiments
TypeBlog Post...do this internally, but they are not available publicly. Furthermore, we did not find any tools which ... is generally advised, there is little detail published on how to do it best. Scientists are typically...the How To Guide. Conclusion CrispyCrunch is now publicly-available for high-throughput design and analysis... -
PITChing MMEJ as an Alternative Route for Gene Editing
TypeBlog Post... for making targeted modifications. A recent publication by Zhang et al. shows just that - using MMEJ ...PMID: 26678082. Find the plasmids from this publication at Addgene. 2. Dalvai, Mathieu, et al. (2015...633. PMID: 26456817. Find plasmids from this publication at Addgene. 3. Zhang, Chi, Xiuhua Meng, Xiaolei... -
CRISPR 101: Mammalian Expression Systems and Delivery Methods
TypeBlog Post...techniques. More and more CRISPR tools are being published each month, making CRISPR a great choice for your...to consult the literature to see if anyone has published a protocol that would work for your system. Addgene... are a few plasmids at Addgene that have been published as CRISPR testing tools: Traffic Light Reporter... -
SciComm: Taking Science to Elementary and Middle Schools
TypeBlog Post...early I’m fortunate to live in a town with a good public school system that has made strong efforts in the...them had imagined for a scientist. I think that establishing this history helped demonstrate that a) I was...examples I used in my presentation had only become public in the previous two weeks, which demonstrated to... -
A Guide to Starting Your Own Journal Club
TypeBlog Post...emerging work by collaboratively discussing recent publications in a specific field(s). Most anyone who has ...stay up to date and engaged with new advances in published science. They also serve as a way to learn about...blog posts centered around scientific papers and publishing Find tips for leading a great meeting ... -
CRISPR Between the Genes: How to Experiment with Enhancers and Epigenomics
TypeBlog Post...This post was originally published on the Quilt Genomics Blog and is republished here with permission. Quilt...identified 23-mer gRNA. Off-target determination was established with Bowtie2 using the parameters first described... -
Avoiding the Dark Side of Fluorescent Protein Fusions with mOX FPs
TypeBlog Post...protein instead localizes to the cytoplasm? Or more troubling, what if a significant fraction of the fusion ...properly? We suggest starting by using the newly published oxidative optimized palette of FPs (moxFPs) [5... non-optimized parental proteins. Our recent publication illustrated the quantitative increase in fluorescent... -
Replacing Paper: Tips for Choosing an Electronic lab Notebook
TypeBlog Post...priorities in most cases include IP protection, publications and funding. If any of these three pillars crashes...not enough. A 2013 study showed that out of 238 published scientific articles, only 46% could be reproduced...there will be no sharp changes in costs once they establish the system within their institution. In the study... -
10 Steps to a Perfect Science Talk
TypeBlog Post...data, choosing controls, or mixing clear solutions—public speaking is skill that any scientist can learn....room, so it is a good idea to start thinking about public speaking early and often. Two of my jobs have indirectly... done so. How can you expect to deliver a great public presentation if you are doing it for the first ... -
Plasmids 101: Gibson Assembly and Other Long-Homology Based Cloning Methods
TypeBlog Post...synthetic biology, mainly because of the ease in assembling multiple fragments in one step with no scar sequences...CRISPR technology and is described in a recent publication by the Lockey lab (Wang, et al. 2015). In this...PMC4569707. 4. Kahl, L. J. & Endy, D. A survey of enabling technologies in synthetic biology. J. Biol. Eng... -
Viral Vectors 101: Optogenetic Tools
TypeBlog Post...the right information When using a previously published system in your own work, you’ll need to know (...break your experiments! First, closely read the publication, including the supplemental data. You’re most... both of which have extensive collections of publications and information on hardware, optogenetics tools... -
Tips for a 1st Time CRISPR User (by a 1st Time CRISPR User)
TypeBlog Post...need to use FACS (like they did in the original publication). I thought I could see GFP expression with a...expression, but I didn’t. 2. In the original publication they see GFP expression in about 20% of their...an MOI of 0.3, as recommended by the original publication. Pro-Tip: 1. Use multiple gRNAs to target different... -
Which Fluorescence Microscopy Techniques is Best for Me?
TypeBlog Post...speed at which a confocal image can be acquired. Assembling an image pixel by pixel is slow; therefore, certain...can a a high enough density of red-photons be establish for this to happen.Using red light has a second... be afraid to seek out expertise from a well-established microscopist at your institution when heading... -
Starter Guide to induced Pluripotent Stem Cells (iPSCs) Part 2: Reprogramming and Transdifferentiation
TypeBlog Post... intermediate pluripotent state is not always obligatory in cell conversion processes [35]. Rather than...Complete removal to convert to iPSCs and re-establishment after Partial rearrangement from one cell type... pursue a career in science communication and publishing after completing her postdoctoral training from... -
Deep Dive: qPCR
TypeBlog Post...The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin... abundant targets: from variable nonsense to publication quality data. Sci Rep 7, 2409 (2017). https:/..., J. The Ultimate qPCR Experiment: Producing Publication Quality, Reproducible Data the First Time, Trends... -
CRISPR Methods for Bacteria: Genome Engineering, CRISPRa, CRISPRi, Base Editing, and More
TypeBlog Post...Originally published Mar 3, 2016 and last updated Apr 13, 2021 by Will Arnold. Although CRISPR systems...the above CRISPRi section, the Marraffini Lab published a robust tool for CRISPRi and CRISPRa using RNAP-Omega-dCas9...RJ, Grossman AD, Gross CA, Rosenberg OS (2019) Enabling genetic analysis of diverse bacteria with Mobile-CRISPRi... -
An Interview with Connie Cepko - Gene Therapy, Plasmid Tools and Insights to Success
TypeBlog Post... PMCID: PMC4096992. Find plasmids from this publication at Addgene. 2. Tang, Jonathan C.Y., et al. “...PubMed PMID: 26258682. Find plasmids from this publication at Addgene. Resources on the Addgene Blog Read... -
Activate Addgene's "Find Plasmids" Badge on Pubmed Abstracts
TypeBlog Post...you ever thought - Is there an easy way to find published plasmids? Do you spend a lot of time in PubMed...to set-up emails to alert you when papers are published on your favorite topic. If you have any other... -
Introducing an All-in-One CRISPR/Cas9 Vector System for Multiplex Genome Engineering
TypeBlog Post...A newly established all-in-one vector construction system for CRISPR/Cas9-mediated multiplex genome engineering.... “However, there had been no systematically established way of making an all-in-one vector for multiplex...