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We narrowed to 337 results for: c rel

Showing: 161 - 180 of 337 results
  1. An Integrin Antibody Toolkit from IPI

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    Blog Post
    ...conformations: (A) bent-closed, (B) extended-closed, and (C) extended-open. When a ligand binds, it typically ... with much lower affinity than their open states (C). Figure courtesy of IPI. IPI anti-integrin toolset...and resources References Hao, Y., Yan, J., Fraser, C., Jiang, A., Anuganti, M., Zhang, R., Lloyd, K., Jardine...Jaumouillé, V., Hao, Y., Coppola, J., Yan, J., Waterman, C. M., Springer, T. A., & Ha, T. (2022). Single-molecule...courses on technologies and laboratory techniques related to antibody discovery. You can find cell surface...
  2. Synthetic Biology - Overview

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    Collection
    ...Autoregulation and Yeast-Mammalian Circuit Transfer C. Collins Lab Quorum Sensing Ellis Lab GeneGuard Endy...Category Cloning and Genomic Tools Browse plasmids related to cloning and genomic modification, including ...and tagging vectors. Metabolism Browse plasmids related to metabolic pathways and auxiliary components....networks. Sensing and Signaling Browse plasmids related to intercellular signaling and environmental sensing...
  3. Which Fluorescent Protein Should I Use?

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    Blog Post
    ...GFP (sfGFP) and mNeonGFP can fold in <10min at 37°C, mCherry takes ~15min, TagRFP ~100min and DsRed ~10hours...instance, enhanced GFP (EGFP) was optimized for 37°C, and is therefore most suited for mammalian or bacteria...GFPS65T is better suited for yeast studies (24-30°C). Brightness: Brightness is a measure of how bright...For a breakdown of GFP, it's variants, and their relevant mutations, check out Marcy's post from last week...not narrow enough to distinguish between closely related colors. Furthermore, most FPs  have a broad range...College of Medicine. He is interested in everything related to gene expression, particularly at the RNA level...
  4. CUT&RUN: An Improved Method for Studying Protein-DNA Interactions

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    Blog Post
    ...organisms and cell lines. Although ChIP-seq is a relatively simple and robust protocol it does have limitations...digestion, fragments are released from nuclei by a short incubation at 37 °C. These short DNA fragments...or more transient DNA-protein interactions, the reliance on fixation does increase the chance of false-..., which stands for ‘Cleavage Under Targets and Release Using Nuclease,’ was recently developed by the ...strong detergent to permeabilize cells rather than to rely on nuclei extraction. They report that this change...
  5. Starter Guide to induced Pluripotent Stem Cells (iPSCs) Part 2:  Reprogramming and Transdifferentiation

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    ...four reprogramming factors- OCT4, SOX2, KLF4, and C-MYC - that induce a differentiated somatic cell to...additional pluripotency stage) Less Safety Less (C-MYC, a known oncogene is one of the reprogramming ...22645348. PubMed Central PMCID: PMC3390875. 25. Patsch, C., et al., Generation of vascular endothelial and smooth... PubMed Central PMCID: PMC4363833. 35. Eguizabal, C., et al., Dedifferentiation, transdifferentiation,...1): p. 82-94. PubMed PMID: 23329641. 36. Jopling, C., S. Boue, and J.C. Izpisua Belmonte, Dedifferentiation...2011. 12(2): p. 79-89. PubMed PMID: 21252997. 37. Merrell, A.J. and B.Z. Stanger, Adult cell plasticity in...2016. 17(7): p. 413-25. PubMed PMID: 26979497. 38. Thorel, F., et al., Conversion of adult pancreatic alpha-cells...
  6. 28 Hot Plasmid Technologies from 2015

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    Blog Post
    ... Cas9 into n-terminal (Cas9(N)-2xNLS) and c-terminal (Cas9(C)-2xNLS) fragments facilitates target DNA ...activation, the c-terminal cas9 fragment was fused with FK 506 binding protein 12 (Cas9(C)-FKBP-2xNLS) and...out there (and particularly CRISPR), it is now relatively easy to design constructs and repair templates...an n-terminal DNA recognition domain and a mostly c-terminal nuclease domain. Feng Zhang's group utilized...Treatment with rapamycin induces Cas9(N)-FRB-NES and Cas9(C)-FKBP-2xNLS dimerization and net influx into the nucleus...genes using dCas9-VP64 activator fragments (dCas9(C)-FKBP-2xNLS-VP64 and dCas9(N)-FRB-NES). This system...constructing fusion proteins with customizable N- and C-terminal modules   Thanks to the lab of Tomás Santalucía...
  7. Viral Vectors 101: Voltage Indicators

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    ...   References and Resources   References Beck C, Zhang D, Gong Y. Enhanced genetically encoded voltage...: 10.1016/j.cobme.2019.10.010. Bando, Y., Grimm, C., Cornejo, V.H. et al. Genetic voltage indicators.... 71 (2019). doi:10.1186/s12915-019-0682-0. Beck, C., Gong, Y. A high-speed, bright, red fluorescent voltage...heartbeat – a muscle contraction – is directly related to the electrical impulse of the cardiac cells....and this voltage is particularly physiologically relevant in neurons, myocytes, and endocrine cells. It ...
  8. Quickest Way to Deposit Plasmids: The Deposit Spreadsheet

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    Blog Post
    ...difficult to grow. Growth Temp Choose from 30 °C, 37 °C, or room temperature. Growth Strain Please...frog), D. rerio (zebrafish), D. melanogaster (fly), C. elegans (nematode), S. cerevisiae (budding yeast)...be indicated in the “Species Other” column. Relevant Mutations Indicate the amino acid change as ...
  9. Progress Towards a PAM-Free CRISPR

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    Blog Post
    ...science.aas9129   Zhang W, Yin J, Zhang-Ding Z, Xin C, Liu M, Wang Y, Ai C, Hu J. In-depth assessment of the PAM compatibility... Cas9 NG - SpG Cas9  NG  - SpRY nuclease  C to T Base Editor SpRY A to G Base Editor SpRY   ... NYN PAMs, but with less efficiency and less reliability. Notably, the SpRY variant didn’t display higher...
  10. Malate Dehydrogenase CUREs Community Collection

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    Collection
    ...expression vector. All His-tags are cloned at the C-terminus of MDH and, if indicated on the plasmid map...support educators interested in integrating MDH-related research into their teaching laboratories. They... plasmids, faculty can begin a sustainable MDH-related CURE focusing on protein expression, structure ...
  11. Antibodies 101: Fab Fragments

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    Blog Post
    ...The modularity of antibodies means that it is relatively easy to physically divide up the different regions...fragments intended for use as primary antibodies are relatively uncommon. Though, if you want to use Fab fragments...features labeled. V = Variable domain. L = Light chain. C = Constant domain. H = Heavy chain. Created with biorender.com...
  12. Tips for a 1st Time CRISPR User (by a 1st Time CRISPR User)

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    Blog Post
    ...high Cas9 MOI considering that A549 cells are relatively easy to transduce. I ended up with too many Cas9...on genomic DNA. The surveyor assay itself was relatively easy. Figure 4: Detection of edited BRAF... new scientific observations. References 1. Rago C, Vogelstein B, Bunz F. Genetic knockouts and knockins...Vaimberg EW, Donovan KF, Smith I, Tothova Z, Wilen C, Orchard R, Virgin HW, Listgarten J, Root DE. Nat ...
  13. Antibodies 101: Flow Cytometry

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    Blog Post
    ...scatter (FSC) and provides information about the relative size of the cell; larger cells produce more FSC...experiment, you would need a way to determine the relative contribution of yellow and orange from FITC and...interest with a fluorescent reporter on the N- or C-terminus of the protein. One downside of fusion proteins...doi.org/10.1002/cpim.40 Picot J, Guerin CL, Le Van Kim C, Boulanger CM (2012) Flow cytometry: retrospective...intensity of events. Since intensity positively correlates with expression, the further the shift of a cell...
  14. Common Injection Routes in Mice

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    Blog Post
    ... P., Rodriguez-Aguayo, C., Walton, B. L., Sood, A. K., Greaver, J., Janssen, C. F., & Lopez-Berestein,... Academic Press. Turner, P. V., Brabb, T., Pekow, C., & Vasbinder, M. A. (2011). Administration of substances...ingestion, such as experimental therapies or pain relief, straight to the stomach. This technique involves...
  15. Google Forums Round Up: First Impressions of NgAgo

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    ...assembly of NgAgo/ssDNA requires incubation at 55 °C - a dangerous, non-physiological temperature for mammalian...genome or just after a stop codon (as required for C-terminus epitope tagging). NgAgo survey Since it was..., he tries random things (101 lessons on Spanish, C++, guitar, photography) and often dreams of a sunny...expression plasmids. Cas9 guide RNA delivery does however rely on cloning into a vector or in vitro synthesis, ...
  16. IBEX Knowledge-Base: A Data Resource for Multiplex Tissue Imaging

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    ...References and Resources References Radtke, A. J., Chu, C. J., Yaniv, Z., Yao, L., Marr, J., Beuschel, R. T.... J., Kandov, E., Lowekamp, B., Speranza, E., Chu, C. J., Gola, A., Thakur, N., Shih, R., Yao, L., Yaniv...the IBEX Knowledge-Base is named on the Zenodo release in keeping with their value of shared ownership...
  17. Cre-Lox and Other Site-Specific Recombinases

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    Collection
    ... a circular piece of DNA (and is not maintained). C) If the sites are on separate DNA molecules (in trans...proteins: The recombinase is split into inactive N- and C-terminal fragments and placed under the control of...alleles in mouse embryonic stem cells. Return to top Related Addgene Plasmid Collections AAV Enhancer Collection...
  18. New Norepinephrine Indicators: nLightG and nLightR

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    Blog Post
    ....2019.02.037 Kagiampaki, Z., Rohner, V., Kiss, C., Curreli, S., Dieter, A., Wilhelm, M., Harada, M., Duss...References and resources References Feng, J., Zhang, C., Lischinsky, J. E., Jing, M., Zhou, J., Wang, H.,...inhibitory feedback in response to norepinephrine release, and clinically-used drugs targeting these receptors...
  19. Hot Plasmids and Viral Preps - September 2021

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    Blog Post
    ...In summary, this cell free system allows for a relatively simple, controlled “one-pot” reaction capable... system is capable of robust expression of high G+C content genes, as validated through monitoring the...
Showing: 161 - 180 of 337 results