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We narrowed to 783 results for: INA

Showing: 91 - 100 of 783 results
  1. Optogenetics + CRISPR, Using Light to Control Genome Editing

    Type
    Blog Post
    Published
    Sept. 3, 2020, 12:15 p.m.
    ... variety of combinations to optimize both fusion proteins. The best performing combination was NLS-dCas9...authors fragmented Cas9 into N-terminal (residues 2-713, N713) and C-terminal (residues 714-1368, C714) halves...This blog post was originally written by Caroline LaManna, published Mar 8, 2016. The updated and expanded...two fusion proteins: 1) the genomic anchor - an inactive, dead Cas9 protein (dCas9) fused to CIB1; and ...settled on a different optimal fusion protein combination. The optimized LACE system consisted of: 1) CIBN-dCas9... CIBN-dCas9-CIBN, where CIBN is the N-terminal fragment of CIB1 and it was fused to both the N- and C-...split-Cas9 (FAST) system constitutively expresses the C-terminal fragment of Cas9 while transcription of the N-...
  2. MXS Chaining

    Type
    Blog Post
    Published
    Feb. 7, 2017, 3:30 p.m.
    ...High-throughput cloning, in a nutshell, is the systematic combination of different genetic sequences into plasmid DNA...can be used to incorporate each element into the final construct. This strategy can be used to build vectors...availability of powerful imaging technologies, the combination of multiple fluorescent protein sequences to ...high-level expression) and a polyA signal (to terminate transcription) and the four constructs were then...create a single polycistronic 15 kb insert. The final construct was then introduced to HeLa cells (Figure...475nm Lyn-tag (derived from the tyrosine-protein kinase Lyn) Membranes 3 mCherry 587nm/ 610 nm human ...digestion followed by ligation. Upon ligation, the original pattern of the MCS is regenerated at the flanks...
  3. CRISPR Between the Genes: How to Experiment with Enhancers and Epigenomics

    Type
    Blog Post
    Published
    Aug. 9, 2016, 2:30 p.m.
    ...Aneesh Karve, CTO at Quilt Data. This post was originally published on the Quilt Genomics Blog and is republished...think of the human genome as a map with three coordinates: chromosome, start, and stop. For instance (chr3...as a kind of “GPS for the genome” to compute coordinates for genetic elements like protein, RNA, and DNA...DNA (Table 1). As with GPS in the real world, coordinates alone aren’t very useful. We’ll need something...come in. They help us to transform raw genomic coordinates into meaningful experiments. Table 1: An emerging...screen to disrupt these enhancers. The third and final step is to conduct our CRISPR screen. We start by...have been prohibitively difficult. CRISPR, in combination with the techniques from Table 1, provides us...
  4. Plasmids 101: Protein tags

    Type
    Blog Post
    Published
    Dec. 11, 2014, 4:26 p.m.
    ...encompass several other tag combinations, though frequently those combinations still include at least one...to aid in the expression and purification of recombinant proteins. Tags for stability and solubility ...hurdles to overcome in order to overexpress a recombinant protein? It is not generally in a cell’s best...glutathione S-transferase (GST), which can be fused to recombinant proteins for one-step purification with glutathione...for antibody-based purification; has inherent enterokinase cleavage site GST Large Protein 26 Purification...HHHHHHAGKA GEGEIPAPLA GTVSKILVKE GDTVKAGQTV LVLEAMKMET EINAPTDGKV EKVLVKERDA VQGGQGLIKI GVHHHHHH  9 Combo Consists...pure as possible? Vectors that offer different combinations of tags are readily available, and though adding...
  5. CRISPR Methods for Bacteria: Genome Engineering, CRISPRa, CRISPRi, Base Editing, and More

    Type
    Blog Post
    Published
    Sept. 28, 2020, noon
    ... that utilizes phage recombination machinery to promote homologous recombination of linear DNA fragments...modified. Cytidine deaminase PmCDA1 Akihiko Kondo’s lab identified a cytidine deaminase, PmCDA1, that could...Originally published Mar 3, 2016 and last updated Apr 13, 2021 by Will Arnold. Although CRISPR systems...phage genetic systems to facilitate homologous recombination in bacteria. These quirks change the way CRISPR-mediated...selection that targets cells in which homologous recombination has not occurred. This powerful negative selection...efficiency; the only non-edited cells to survive have inactivating mutations in the Cas9 or spacer sequence, and...al., 2015). pCas contains Cas9 and the phage recombination gene lambda Red. pTargetF contains the specific...
  6. Tips and Tricks for Using Golden Gate Modular Cloning (MoClo)

    Type
    Blog Post
    Published
    July 8, 2025, 1:15 p.m.
    ...sequence with no stop codon; TAG, C-terminal tag; TER, terminator. Created with BioRender.com. The...stocks. To avoid cross-contamination, we recommend retrieving plasmids from your original Addgene kit plate... new glycerol stocks gets contaminated, you can resort back to your original Addgene kit plate for fresh...construct a Level 1 vector with a promoter and terminator flanking the CDS, and a Level 2 multigene vector...plan your cloning, and have a clear vision of the final vector structure you want to achieve before starting... of interest a promoter, a coding sequence, a terminator, or other plasmid part? Do you want to fuse your...you to sequence the entire insert region of your final plasmid or those you are selecting for further assemblies...
  7. Hot Biosensors 2022: Year-End Roundup

    Type
    Blog Post
    Published
    Dec. 6, 2022, 2:15 p.m.
    ....cell.2022.07.013 pYtags illuminate RTK signaling Receptor tyrosine kinases (RTKs) are a major class ... size (~1500 bp) makes iGECInano suitable for AAV packaging.    Find iGECInano plasmids here!   Matlashov...opening up new research directions that were inaccessible with earlier tools. They also produce more than...sensitivity, and photostability under two-photon illumination than previous GEVIs. Some constructs are also...the phosphorylated state of an immunoreceptor tyrosinase-based activation motif (ITAM). By fusing ITAM...spatiotemporal measurements of receptor tyrosine kinase signaling in living cells. bioRxiv 2022.08.13.503850....503850; doi: 10.1101/2022.08.13.503850.  iGECInano NIR calcium reporter Near-infrared (NIR) fluorescent...
  8. CRISPR 101: Homology Directed Repair

    Type
    Blog Post
    Published
    Jan. 26, 2023, 2:15 p.m.
    ...Originally written by Marcy Patrick and Mary Gearing on Mar 12, 2015; updated by Christina Mork, Jul ... Homologous Recombination References: Repair of Strand Breaks by Homologous Recombination. Jasin M and...DNA template used for repair is identical to the original DNA sequence at the DSB, or it can introduce specific... to as the displacement loop (D loop). The recombination intermediates can then resolve to complete the...newly synthesized sequences are retained by the original damaged DNA molecule. Unlike in DSBR, following...The size of the intended edit is the biggest determinant when selecting a type of donor. ssDNA templates...Mutagenesis (2000). PubMed. Multiple Pathways of Recombination Induced by Double-Strand Breaks in Saccharomyces...
  9. New Neuroscience Tool: The iGluSnFR3 Glutamate Sensor

    Type
    Blog Post
    Published
    April 7, 2022, 1:15 p.m.
    ...localization through different C-terminal anchoring domains The original iGluSnFR in the pMinDisplay backbone...modified form of the cytosolic C-terminal domain of Stargazin including a terminal PDZ ligand. The researchers...This post was originally written by Tyler Ford in 2018. It was updated by guest blogger Abhi Aggarwal... explore advances that have happened since our original 2018 blog post. The origins of iGluSnFR   iGluSnFR... on the extracellular side. In addition to the original PDGFR TMD, the researchers introduce iGluSnFR3...adapted from Aggarwal et al… Figure 4. PDGFR is a C-terminal fusion to the PDGFR transmembrane domain in the...expression pMinDisplay vector. GPI contains a C-terminal glycosylphostidylinositol anchor. SGZ contains...
  10. Photosensitizer Induced Cell Ablation with FAP-TAP MG-2I-dL5**

    Type
    Blog Post
    Published
    Sept. 19, 2017, 1:20 p.m.
    ...vivo.  Read on to learn more about this killer illumination technique! What is a photosensitizer? First...species (ROS). The ROS produced by photosensitizers inactivate target proteins or cells while having little ...within 30 minutes of exposure. 90 seconds of illumination were sufficient for 100% effective killing of...the dye. Embryos exposed to just 12 minutes of illumination had fewer mCer3-labeled cells in their hearts...photosensitizer protein that generates ROS when illuminated with green light. They found that KillerRed required...allows for precise light-based control of protein inactivation/cell ablation while having limited collateral...comments below!   References 1. He, J., Wang, Y., Missinato, M. A., Onuoha, E., Perkins, L. A., Watkins, S...
Showing: 91 - 100 of 783 results