Skip to main content
Addgene

Enter a sequence to perform a BLAST-based search of the Addgene plasmid sequence database.

Information

In Category

We narrowed to 383 results for: plasmid dna

Showing: 181 - 200 of 383 results

  1. Synthesized by Ginkgo Bioworks, Shared by Addgene: SARS-CoV-2 Plasmids for Many Expression Systems

    Type
    Blog Post
    Published
    May 19, 2020, 1:15 p.m.
    ...What SARS-CoV-2 plasmids from Ginkgo Bioworks are available for request? Currently, plasmids containing all...available. Plasmids are continually added as they complete QC and you can find all available plasmids listed...prepare Sanger reactions by mixing this isolated plasmid DNA with appropriate sequencing primers, and hand...to fresh data! These same plasmids are then added into our normal full plasmid NGS queue in order to bring...pipeline. For the first ~50 plasmids we perform our standard full plasmid sequencing by NGS. Addgene’s...on Addgene.org Find all plasmids from Ginkgo Bioworks  Find COVID-19 plasmids for your research Browse... to synthesize and share over 1,850 SARS-CoV-2 plasmids to help academic and industrial labs accelerate...

  2. MXS Chaining

    Type
    Blog Post
    Published
    Feb. 7, 2017, 3:30 p.m.
    ...combination of different genetic sequences into plasmid DNA. In high throughput cloning techniques, although...Gibson Assembly Learn About Other Plasmid Cloning Techniques Plasmids 101: Green Fluorescent Protein Resources...Fluorescent Protein Collection Find Plasmid Kits at Addgene Find Plasmid Cloning Protocols References 1....MXS chaining MXS-chaining was designed to create plasmids for fluorescence imaging or flow cytometry applications...modules (Figure 2) are contained in individual plasmids and are each flanked by the same multiple cloning...assembly method Single reaction, can assemble large DNA sequences, no restriction enzymes needed Not optimal...throughput cloning is to facilitate the construction of plasmids with many components. The creators of the MXS-...

  3. Plasmids 101: Codon usage bias

    Type
    Blog Post
    Published
    Sept. 27, 2018, 1:09 p.m.
    ...mutation” field on the plasmid page (see plasmid 87904 for example). As many plasmids available from Addgene...blog Plasmids 101: protein expression Plasmids 101: E. coli strains for protein expression Plasmids 101...codon optimized by ordering plasmids containing them from Addgene. If a plasmid at Addgene contains a gene...might think it’s easy to come up with a workable DNA sequence to encode your peptide of interest and produce...alternative tRNAs Codon optimization With low cost DNA synthesis, one of the primary ways researchers solve...researchers have created codon optimization algorithms and DNA synthesis companies such as IDT and GenScript host...

  4. CRISPR 101: Cytosine Transversion Editors

    Type
    Blog Post
    Published
    March 25, 2025, 1:15 p.m.
    ...components: the DNA repair protein rXRCC1, or the DNA binding and lyase domain of DNA polymerase β (PB...without breaking the DNA backbone, making them efficient and precise tools for altering DNA sequences. These...structure. In order to bind DNA, Cas9 requires (1) a guide RNA, (2) a complementary DNA sequence, and (3) a protospacer-adjacent...used by Cas9 to locate a matching DNA sequence.   Target strand The DNA strand that base pairs with the...non-target strand of DNA for Cas9 to bind.   R-loop The structure formed by Cas9 binding to DNA and separating...(AP) site. UNG / UDG Uracil DNA N-Glycosylase Removes uracil from DNA, creating an abasic site. UGI...single-stranded DNA (ssDNA) region, using enzymes fused to Cas9 to alter the exposed ssDNA bases. Thus, ...

  5. Building and Validating Recombinant Antibodies: A Case Study

    Type
    Blog Post
    Published
    April 5, 2022, 1:20 p.m.
    ...expression plasmids were DNA sequenced to determine the VH and VL sequence. These plasmids have been deposited...important collection.  Creating the Plasmids To begin constructing the plasmids for expression of mAbs, the Trimmer...scientific community with the plasmid sequences available from each plasmid webpage. Importantly, the methods...Resources on the Addgene blog:  Plasmid-Based Recombinant Antibodies  Plasmids 101: Secondary Nanobody Toolbox...NABOR are recombinant antibodies expressed from plasmids that have been deposited with Addgene. Here, we... first antibodies distributed by Addgene.  The plasmids used to generate these antibodies were based off... to create an amplicon that  was cloned into a plasmid backbone for expression of the mAb heavy and light...

  6. REPLACR Mutagenesis: Replacing In Vitro Recombination Methods

    Type
    Blog Post
    Published
    Feb. 10, 2016, 3:30 p.m.
    ...amplify the template plasmid. The parental, nonmutated DNA is digested with methylated DNA-specific enzyme ...recommended for plasmids up to 25 kb, most cloners should be fine, especially using plasmids in the 10-12...Other Plasmid Cloning Techniques like SLIC and Golden Gate Cloning Learn How to Verify Your Plasmid Read...Reference Pages Choose Your Perfect Plasmid Backbone Find Plasmids for Your Research ...made genomic SDM relatively straightforward, but plasmid-based SDM has lagged behind. While commercial kits... REPLACR (Recombineering of Ends of Linearized Plasmids After PCR). Current site directed mutagenesis...of background colonies carrying the unmodified plasmid. For insertions, it’s possible to use the same ...

  7. Tips for arabidopsis transformation

    Type
    Blog Post
    Published
    Oct. 25, 2018, 1:23 p.m.
    ....org Find plant plasmids Visit our plant resource page Deposit arabidopsis plasmids with Addgene ...pathogenic species that stably integrates transfer DNA (tDNA) into the genomes of the plants it attacks Growing...this method include: Cloning and transforming a plasmid into the bacterium Agrobacterium tumeficans - a...available (Weigel and Glazebrook, 2002). Find plant plasmid resources at Addgene  Choosing an expression system...options, but here are a couple of my favorites. Plasmids from the Tsuyoshi Nakagawa lab are binary gateway...prefer Golden Gate assembly, there are a series of plasmids from the Dinneny lab that additionally allow for...culture you are growing definitely contains your plasmid. Grow lots of Agrobacterium: The more agrobacterium...

  8. Synthetic Biology, Artificial Chromosomes, iGEM & More - Interview with Tom Ellis

    Type
    Blog Post
    Published
    Nov. 29, 2017, 2 p.m.
    ...biology as the engineering of biology at the level of DNA using modular, standardized, disciplined, and open...research as can already be seen with things like DNA synthesis, Golden Gate cloning, and CRISPR. The yeast...Synthetic Biology Education Nonprofit BioBuilder Plasmids 101: Golden Gate Cloning Learn About Working at...Michael Koeris Resources at Addgene.org Find Plasmids from the Ellis Lab Find Synthetic Biology Kits...

  9. Hot Plasmids - March 2019 - Anti-CRISPR, 2in1 Cloning, Fluorescent Voltage Indicators, and Photoswitchable Proteins

    Type
    Blog Post
    Published
    March 19, 2019, 1:31 p.m.
    ...highlight a subset of the new plasmids in the repository through our hot plasmids articles. These articles ...recent plasmid deposits and we hope they'll make it easier for you to find and use the plasmids you need... recent plasmid deposit please sign up here.          Listen to this episode of Hot Plasmids! Optogenetic...Agrobacterium-mediated DNA transfer, each GOI is usually expressed from a different plasmid, which may lead ...Grefen and Blatt, 2012). The 2in1 Plasmid Toolkit consists of 4 plasmid toolkits generated with 4 different...deposited the resulting optogenetic plasmid tools which includes plasmids encoding a fusion between cPYP and...CRISPR complexes were observed binding telomeric DNA. What’s great about CASANOVA? It works with the S...

  10. Viral Vectors 101: Viral Vector Elements

    Type
    Blog Post
    Published
    July 25, 2023, 1 p.m.
    ...lentiviral plasmids Addgene's most popular retroviral plasmids Addgene's collection of AAV plasmids Addgene...split across several plasmids (often three), for safety purposes. The primary plasmid with the delivered...often a gene) is called the transfer plasmid while the other plasmids with packaging or replication components...of adenovirus plasmids Resources on the Addgene blog Parts of the AAV packaging plasmid Overview of Lentiviral...This is often cDNA, shRNA, or something similar, and is contained on the transfer plasmid. If expression...will all be ssDNA within the viral particle. The ITRs base pair with each other to allow DNA synthesis ... the dsDNA virus. Viral packaging and entry Adenovirus is quite large and has more helper plasmid components...

  11. CRISPR 101: Targeting Non-Coding RNAs with CRISPR/Cas9

    Type
    Blog Post
    Published
    Nov. 14, 2024, 2:15 p.m.
    ... Fonfara I, Hauer M, Doudna JA, Charpentier E. A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive...genes by generating insertions or deletions in the DNA sequence. This same approach is effective to target...because very small deletions and insertions in the DNA sequence can completely disrupt expression of the... gRNAs can be used to target specific sizes of a DNA fragment and turn off the function by removing the...affect nearby genes (Figure 1A-C). Find CRISPR plasmids at Addgene! Knock-in: Introducing tags or stop... Once Cas9 generates double-strand breaks, a new DNA sequence can be knocked-in, or introduced, into the...ncRNA expression without permanently altering the DNA, CRISPR interference (CRISPRi) and CRISPR activation...

  12. History of CRISPR Cas - A tale of survival and evolution

    Type
    Blog Post
    Published
    Nov. 25, 2013, 10:12 p.m.
    ...thermophilus to predatory phages to test if the exogenous DNA would be incorporated into the bacterial genome. ...specifically, specialized Cas proteins snip the foreign DNA into small fragments approximately 30bp in length...Once the CRISPR/Cas complex binds to the foreign DNA, a cut is made to destroy the invader. Wikipedia... in the field, and enabling access to multiple plasmids used for various platform applications. For more... out Addgene’s CRISPR Guide or find CRISPR/Cas plasmids for your research. Do you have a cool idea or ...

  13. Plasmids for Endogenous Gene Tagging in Human Cells

    Type
    Blog Post
    Published
    April 6, 2017, 1:02 p.m.
    ...Designing the donor plasmid Figure 2: Donor plasmid design strategy. A donor plasmid contains 1 kb homology...methodology is the use of a donor plasmid that contains long stretches of DNA on either side of the fluorescent...1kb of homologous DNA flanking both sides (about 2.7kb total)—is inserted into a plasmid backbone for delivery...found within the homology areas of the plasmid to prevent the plasmid from being cut and destroyed by CRISPR... the tag. Created with BioRender.com. Plasmids, plasmids everywhere To find out more about gene edited...expensive for many labs. We’ve created and tested plasmids that use CRISPR/Cas9 to endogenously tag a wide...wide variety of genes with GFP. These plasmids are available through Addgene, and the stem cell lines we...

  14. New CRISPR Tools: Cas7-11 and PASTE

    Type
    Blog Post
    Published
    Feb. 17, 2022, 2 p.m.
    ... that could cut RNA or DNA via a CRISPR mechanism. The weird black pellet's DNA yielded a new CRISPR effector...say the sample had their attention! They isolated DNA from the sample, amplified the CRISPR locus from ...discovery The first generation of CRISPR could cut DNA, the second generation could do base editing, and...PASTE, which can “drag and drop” kilobases’ worth of DNA with CRISPR-driven precision into a genome, can be...integrase would then integrate into with a large DNA insert – or Programmable Addition via Site-specific...take a genetic sequence and integrate it into any DNA sequence containing the 38-50 bp sequence recognized...Use PASTE can be delivered via a single dose of plasmids, works in non-dividing and primary cells, and ...

  15. Protein Tagging with CRISPR/Cas9: A Conversation with Mendenhall and Myers

    Type
    Blog Post
    Published
    July 28, 2015, 2:30 p.m.
    ...of the second plasmid can be done in one day in one assembly reaction. This second plasmid saves you a ...alerts when plasmids become available.  We’ve also had some requests for variations on the plasmids we’ve developed...and Myers for speaking with us! Find the Plasmids: Plasmids for protein tagging with CRISPR Additional...goal for years as members of the ENCyclopedia of DNA Elements Project (ENCODE), an NIH-funded effort to... available at Addgene. For more details on the plasmids that are currently available along with detailed...system, what we are doing is adding in a second plasmid to target an epitope tag onto the transcription...second vector is a homology directed repair donor plasmid with homology arms and a selection marker. If things...

  16. Quickest Way to Deposit Plasmids: The Deposit Spreadsheet

    Type
    Blog Post
    Published
    March 8, 2017, 3:15 p.m.
    ...deposits with more than 10 plasmids is to use our deposit spreadsheet?  Our plasmid deposit process can be... Send plasmid information to Addgene Material Transfer Agreement (MTA) approval  Send plasmids to Addgene...instructions on how to send liquid DNA or bacterial streaks of your plasmids back to us. Our scientists will...spreadsheet and copy and paste your plasmid data directly into our file, one plasmid per row, as outlined by the... Data Field Description Plasmid Name Use a descriptive plasmid name and match the name as it ...application of the plasmid and will help a scientist outside your field understand if this plasmid will work for...possible, we propagate plasmids in the standard cloning strain DH5α. For plasmids with highly repetitive...

  17. Hot Plasmids - December 2019 - CRISPR pooled library, LipoGlo, CRISPRa, and Voltage Imaging Tools

    Type
    Blog Post
    Published
    Dec. 10, 2019, 1:58 p.m.
    ...highlight a subset of the new plasmids in the repository through our hot plasmids articles. These articles ...recent plasmid deposits and we hope they'll make it easier for you to find and use the plasmids you need...need. If you'd ever like to write about a recent plasmid deposit please sign up here.        A retroviral...transducing a only a single gRNA per cell. The viral DNA containing the gRNA then integrates into the genome...identified by next-generation sequencing of the genomic DNA. However, some cell types are poorly transduced by...treatment of cardiovascular disease. Find the LipoGlo plasmids at Addgene! Lawler et al, QJM: An International...promoter systems. Find these CRISPR activation plasmids at Addgene. Liu et al., Nature Communications,...

  18. Plasmids 101: Modular Cloning Applications and Kits

    Type
    Blog Post
    Published
    May 14, 2024, 1:15 p.m.
    ...connectors, cDNAs, and more to find the perfect combination. The EcoFlex Kit has a wide array of DNA parts ...Modular cloning is a popular DNA assembly tool used to build single- and multi-gene constructs for a ...background MoClo is a clever way to assemble several DNA parts in a specific orientation using Type IIS restriction...between CRISPR components expressed from different plasmid backbones. They noted that backbone differences... as the order, or distance in the placement of plasmid elements can impact expression levels and consequently...system was used to assess how different lentiviral plasmid backbone elements impact viral titer and to compare...plants, and animals (Chiasson et al., 2019). Many plasmid elements such as promoters or fluorophores are ...

  19. Hot Plasmids April 2018 - Protein Degradation, Nanoscopy, FIRE-Cas9, and Yeast Expression Tools

    Type
    Blog Post
    Published
    April 23, 2018, 2 p.m.
    ...highlight a subset of the new plasmids in the repository through our hot plasmids articles. These articles ...recent plasmid deposits and we hope they'll make it easier for you to find and use the plasmids you need... our hot plasmid articles from April 2018. If you'd ever like to write about a recent plasmid deposit ...sign up here. No time to read? Listen to our Hot Plasmids Podcast! TRIM-Away: Targeted endogenous protein...segment CRISPR and RNAi have helped researchers alter DNA sequence and RNA expression - but what if you just...your protein knockdown experiments! The TRIM-Away plasmids can be found here. Clift et al. Cell. 2017. PubMed...Endosomal pH Sensors podcast segment The first Addgene plasmid deposit from Professor Stefan Hell, who won the...

  20. How to Deposit Your Plasmids with Addgene

    Type
    Blog Post
    Published
    Feb. 27, 2024, 2:15 p.m.
    ...Unpublished or pre-publication plasmids": Unpublished plasmids or plasmids that will not be published are...and entering a plasmid name,plasmid type, and plasmid description/experimental purpose (right). On the...with your plasmids, and adding all the plasmids at once increases the likelihood that the plasmids are given...liquid DNA with all of the plasmids in the library in a single tube. The number of unique plasmids in a ...easy for you to share plasmids. To achieve this goal, we will archive any plasmids you've deposited with...Spreadsheet". Start your plasmid deposit There are two options to begin your plasmid deposit. Figure 2: Choose... Choose to submit plasmid(s) online or by using a spreadsheet. The plasmid information can be entered ...
Showing: 181 - 200 of 383 results