CRISPR 101: Off-Target Effects
Type
Blog Post
Published
Feb. 8, 2024, 2:15 p.m.
...used in human clinical trials. An off-target rate of 5% is far too high when considering human patients...likely will not have a significant impact on your data.
You are trying to generate a knockout cell line...there are gRNA softwares available which score candidate gRNAs for on-target and off-target event efficiencies...them will also give you a specific list of the candidate off-target sites. For example, if there are 10... review of other targeted sequencing methods.
Candidate site sequencing
Sites with high sequence similarity...DNA binding sites within your experiment. For a candidate site-specific approach, mRNA quantification or...CRISPR 101: Cas9 The Other Cas(s)
CRISPR 101: Validating Your Genome Edit
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