| Selected features |
| HIV-1_5_LTR | | 455 - 635 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| truncHIV-1_3_LTR | | 455 - 635 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| HIV-1_psi_pack | | 746 - 790 |  | HIV-1_psi_pack |  | | tgagtacgccaaaaattttgactagcggaggctagaaggagagag |
|
| RRE | | 1300 - 1533 |  | RRE |  | aggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtcaat gacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaattt gctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaagca gctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcct |
|
| Orf frame 2 | | 1178 - 2056 |  | Orf frame 2 |  | atgagggacaattggagaagtgaattatataaatataaagtagtaaaaattgaaccatta ggagtagcacccaccaaggcaaagagaagagtggtgcagagagaaaaaagagcagtggga ataggagctttgttccttgggttcttgggagcagcaggaagcactatgggcgcagcgtca atgacgctgacggtacaggccagacaattattgtctggtatagtgcagcagcagaacaat ttgctgagggctattgaggcgcaacagcatctgttgcaactcacagtctggggcatcaag cagctccaggcaagaatcctggctgtggaaagatacctaaaggatcaacagctcctgggg atttggggttgctctggaaaactcatttgcaccactgctgtgccttggaatgctagttgg agtaataaatctctggaacagatttggaatcacacgacctggatggagtgggacagagaa attaacaattacacaagcttaatacactccttaattgaagaatcgcaaaaccagcaagaa aagaatgaacaagaattattggaattagataaatgggcaagtttgtggaattggtttaac ataacaaattggctgtggtatataaaattattcataatgatagtaggaggcttggtaggt ttaagaatagtttttgctgtactttctatagtgaatagagttaggcagggatattcacca ttatcgtttcagacccacctcccaaccccgaggggacccgacaggcccgaaggaatagaa gaagaaggtggagagagagacagagacagatccattcgattagtgaacggatctcgacgg tatcgcgatgtcgacgataagctttgcaaagatggataa |
|
| Orf frame 1 | | 3039 - 1906 |  | Orf frame 1 |  | atgaagcgacggctgaggacggaaaggcccttttcctttgtgtgggtgactcacccgccc gctctcccgagcgccgcgtcctccattttgagctccctgcagcagggccgggaagcggcc atctttccgctcacgcaactggtgccgaccgggccagccttgccgcccagggcggggcga tacacggcggcgcgaggccaggcaccagagcaggccggccagcttgagactacccccgtc cgattctcggtggccgcgctcgcaggccccgcctcgccgaacatgtgcgctgggacgcac gggccccgtcgccgcccgcggccccaaaaaccgaaataccagtgtgcagatcttggcccg catttacaagactatcttgccagaaaaaaagcgtcgcagcaggtcatcaaaaattttaaa tggctagagacttatcgaaagcagcgagacaggcgcgaaggtgccaccagattcgcacgc ggcggccccagcgcccaggccaggcctcaactcaagcacgaggcgaaggggctccttaag cgcaaggcctcgaactctcccacccacttccaacccgaagctcgggatcaagaatcacgt actgcagccagtggaagtaattcaaggcacgcaagggccataacccgtaaagaggccagg cccgcgggaaccacacacggcacttacctgtgttctggcggcaaacccgttgcgaaaaag aacgttcacggcgactactgcacttatatacggttctcccccaccctcgggaaaaaggcg gagccagtacacgacatcactttcccagtttaccccgcgccaccttctctaggcaccggt tcaattgccgacccctccccccaacttctcggggactgtgggcgatgtgcgctctgccca ctgacgggcaccggagccaattcccactcctttcaagacctagaaggtccattagctgca aagattcctctctgtttaaaactttatccatctttgcaaagcttatcgtcgacatcgcga taccgtcgagatccgttcactaatcgaatggatctgtctctgtctctctctccaccttct tcttctattccttcgggcctgtcgggtcccctcggggttgggaggtgggtctga |
|
| EF1a_promoter | | 2129 - 3299 |  | EF1a_promoter |  | gtgcccgtcagtgggcagagcgcacatcgcccacagtccccgagaagttggggggagggg tcggcaattgaaccggtgcctagagaaggtggcgcggggtaaactgggaaagtgatgtcg tgtactggctccgcctttttcccgagggtgggggagaaccgtatataagtgcagtagtcg ccgtgaacgttctttttcgcaacgggtttgccgccagaacacaggtaagtgccgtgtgtg gttcccgcgggcctggcctctttacgggttatggcccttgcgtgccttgaattacttcca ctggctgcagtacgtgattcttgatcccgagcttcgggttggaagtgggtgggagagttc gaggccttgcgcttaaggagccccttcgcctcgtgcttgagttgaggcctggcctgggcg ctggggccgccgcgtgcgaatctggtggcaccttcgcgcctgtctcgctgctttcgataa gtctctagccatttaaaatttttgatgacctgctgcgacgctttttttctggcaagatag tcttgtaaatgcgggccaagatctgcacactggtatttcggtttttggggccgcgggcgg cgacggggcccgtgcgtcccagcgcacatgttcggcgaggcggggcctgcgagcgcggcc accgagaatcggacgggggtagtctcaagctggccggcctgctctggtgcctggcctcgc gccgccgtgtatcgccccgccctgggcggcaaggctggcccggtcggcaccagttgcgtg agcggaaagatggccgcttcccggccctgctgcagggagctcaaaatggaggacgcggcg ctcgggagagcgggcgggtgagtcacccacacaaaggaaaagggcctttccgtcctcagc cgtcgcttcatgtgactccacggagtaccgggcgccgtccaggcacctcgattagttctc gagcttttggagtacgtcgtctttaggttggggggaggggttttatgcgatggagtttcc ccacactgagtgggtggagactgaagttaggccagcttggcacttgatgtaattctcctt ggaatttgccctttttgagtttggatcttggttcattctcaagcctcagacagtggttca aagtttttttcttccatttcaggtgtcgtga |
|
| EF1a_fwd_primer | | 3247 - 3267 |  | EF1a_fwd_primer |  | | tcaagcctcagacagtggttc |
|
| cPPT | | 3351 - 3366 |  | cPPT |  | | aaaagaaaagggggga |
|
| EGFP_N_primer | | 3620 - 3599 |  | EGFP_N_primer |  | | cgtcgccgtccagctcgaccag |
|
| EGFP | | 3554 - 4270 |  | EGFP |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaag |
|
| Orf frame 2 | | 3554 - 4291 |  | Orf frame 2 |  | atggtgagcaagggcgaggagctgttcaccggggtggtgcccatcctggtcgagctggac ggcgacgtaaacggccacaagttcagcgtgtccggcgagggcgagggcgatgccacctac ggcaagctgaccctgaagttcatctgcaccaccggcaagctgcccgtgccctggcccacc ctcgtgaccaccctgacctacggcgtgcagtgcttcagccgctaccccgaccacatgaag cagcacgacttcttcaagtccgccatgcccgaaggctacgtccaggagcgcaccatcttc ttcaaggacgacggcaactacaagacccgcgccgaggtgaagttcgagggcgacaccctg gtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcac aagctggagtacaactacaacagccacaacgtctatatcatggccgacaagcagaagaac ggcatcaaggtgaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgcc gaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccac tacctgagcacccagtccgccctgagcaaagaccccaacgagaagcgcgatcacatggtc ctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtcc ggactcagatctcgatag |
|
| EGFP_C_primer | | 4207 - 4228 |  | EGFP_C_primer |  | | catggtcctgctggagttcgtg |
|
| WPRE | | 4345 - 4932 |  | WPRE |  | tcaacctctggattacaaaatttgtgaaagattgactggtattcttaactatgttgctcc ttttacgctatgtggatacgctgctttaatgcctttgtatcatgctattgcttcccgtat ggctttcattttctcctccttgtataaatcctggttgctgtctctttatgaggagttgtg gcccgttgtcaggcaacgtggcgtggtgtgcactgtgtttgctgacgcaacccccactgg ttggggcattgccaccacctgtcagctcctttccgggactttcgctttccccctccctat tgccacggcggaactcatcgccgcctgccttgcccgctgctggacaggggctcggctgtt gggcactgacaattccgtggtgttgtcggggaagctgacgtcctttccatggctgctcgc ctgtgttgccacctggattctgcgcgggacgtccttctgctacgtcccttcggccctcaa tccagcggaccttccttcccgcggcctgctgccggctctgcggcctcttccgcgtcttcg ccttcgccctcagacgagtcggatctccctttgggccgcctccccgca |
|
| cPPT | | 5003 - 5018 |  | cPPT |  | | aaaagaaaagggggga |
|
| U3PPT | | 5003 - 5024 |  | U3PPT |  | | aaaagaaaaggggggactggaa |
|
| TRE | | 5085 - 5372 |  | TRE |  | ctcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttaccactccc tatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa gtgaaagtcgagtttaccactccctatcagtgatagagaaaagtgaaagtcgagtttacc actccctatcagtgatagagaaaagtgaaagtcgagtttaccactccctatcagtgatag agaaaagtgaaagtcgagtttaccactccctatcagtgatagagaaaa |
|
| H1_primer | | 5533 - 5552 |  | H1_primer |  | | tcgctatgtgttctgggaaa |
|
| loxP | | 5647 - 5680 |  | loxP |  | | ataacttcgtatagcatacattatacgaagttat |
|
| HIV-1_5_LTR | | 5700 - 5880 |  | HIV-1_5_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| truncHIV-1_3_LTR | | 5700 - 5880 |  | truncHIV-1_3_LTR |  | gggtctctctggttagaccagatctgagcctgggagctctctggctaactagggaaccca ctgcttaagcctcaataaagcttgccttgagtgcttcaagtagtgtgtgcccgtctgttg tgtgactctggtaactagagatccctcagacccttttagtcagtgtggaaaatctctagc a |
|
| Sp6_primer | | 5923 - 5906 |  | Sp6_primer |  | | atttaggtgacactatag |
|
| pBRrevBam_primer | | 6232 - 6213 |  | pBRrevBam_primer |  | | ggtgatgtcggcgatatagg |
|
| tet(564-300) | | 6424 - 6161 |  | tet(564-300) |  | ctctcccttatgcgactcctgcattaggaagcagcccagtagtaggttgaggccgttgag caccgccgccgcaaggaatggtgcatgcaaggagatggcgcccaacagtcccccggccac ggggcctgccaccatacccacgccgaaacaagcgctcatgagcccgaagtggcgagcccg atcttccccatcggtgatgtcggcgatataggcgccagcaaccgcacctgtggcgccggt gatgccggccacgatgcgtccggc |
|
| pGEX_3_primer | | 6565 - 6587 |  | pGEX_3_primer |  | | ccgggagctgcatgtgtcagagg |
|
| AmpR_promoter | | 6746 - 6774 |  | AmpR_promoter |  | | ttcaaatatgtatccgctcatgagacaat |
|
| Orf frame 3 | | 6816 - 7676 |  | Orf frame 3 |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa |
|
| Ampicillin | | 6816 - 7676 |  | Ampicillin |  | atgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcct gtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgca cgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgcccc gaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcc cgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttg gttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaatta tgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatc ggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgcctt gatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatg cctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagct tcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgc tcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtgggtct cgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctac acgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcc tcactgattaagcattggtaa |
|
| pBR322_origin | | 7831 - 8450 |  | pBR322_origin |  | agatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaa aaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttc cgaaggtaactggcttcagcagagcgcagataccaaatactgtccttctagtgtagccgt agttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcc tgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagac gatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagccca gcttggagcgaacgacctacaccgaactgagatacctacagcgtgagcattgagaaagcg ccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacag gagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggt ttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctat ggaaaaacgccagcaacgcg |
|
| pBABE_3_primer | | 8696 - 8676 |  | pBABE_3_primer |  | | accctaactgacacacattcc |
|
| SV40_enhancer | | 8897 - 8682 |  | SV40_enhancer |  | gagaatgggcggaactgggcggagttaggggcgggatgggcggagttaggggcgggacta tggttgctgactaattgagatgcatgctttgcatacttctgcctgctggggagcctgggg actttccacacctggttgctgactaattgagatgcatgctttgcatacttctgcctgctg gggagcctggggactttccacaccctaactgacaca |
|
| SV40_promoter | | 8694 - 8962 |  | SV40_promoter |  | ggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcatgcatctcaatt agtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagca tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagcta |
|
| SV40_origin | | 8861 - 8938 |  | SV40_origin |  | atcccgcccctaactccgcccagttccgcccattctccgccccatggctgactaattttt tttatttatgcagaggcc |
|
| SV40_promoter | | 8814 - 9016 |  | SV40_promoter |  | tgcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaa ctccgcccagttccgcccattctccgccccatggctgactaattttttttatttatgcag aggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggcttttttggag gcctaggcttttgcaaaaagctt |
|
| SV40pro_F_primer | | 8923 - 8942 |  | SV40pro_F_primer |  | | tatttatgcagaggccgagg |
|
| SV40_int | | 10143 - 10158 |  | SV40_int |  | | ggtaaatataaaattt |
|
| SV40_3_splice | | 10164 - 10211 |  | SV40_3_splice |  | | tgtataatgtgttaaactactgattctaattgtttgtgtattttagat |
|
| SV40_PA_terminator | | 10787 - 10918 |  | SV40_PA_terminator |  | ttgtttattgcagcttataatggttacaaataaagcaatagcatcacaaatttcacaaat aaagcatttttttcactgcattctagttgtggtttgtccaaactcatcaatgtatcttat catgtctggatc |
|
| EBV_rev_primer | | 10875 - 10894 |  | EBV_rev_primer |  | | gtggtttgtccaaactcatc |
|