AAV pCAG-FLEX-tdTomato-WPRE Citations (46)
Originally described in: A mesoscale connectome of the mouse brain.Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, Wakeman W, Li Y, Feng D, Ho A, Nicholas E, Hirokawa KE, Bohn P, Joines KM, Peng H, Hawrylycz MJ, Phillips JW, Hohmann JG, Wohnoutka P, Gerfen CR, Koch C, Bernard A, Dang C, Jones AR, Zeng H Nature. 2014 Apr 10;508(7495):207-14. doi: 10.1038/nature13186. Epub 2014 Apr 2. PubMed Journal
Articles Citing AAV pCAG-FLEX-tdTomato-WPRE
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Coupling optogenetic stimulation with NanoLuc-based luminescence (BRET) Ca++ sensing.
Yang J, Cumberbatch D, Centanni S, Shi SQ, Winder D, Webb D, Johnson CH.
Nat Commun. 2016 Oct 27;7:13268. doi: 10.1038/ncomms13268.
PubMed
Associated Plasmids |
| Chrna5-expressing neurons in the interpeduncular nucleus mediate aversion primed by prior stimulation or nicotine exposure. Morton G, Nasirova N, Sparks DW, Brodsky M, Sivakumaran S, Lambe EK, Turner EE. J Neurosci. 2018 Jun 28. pii: JNEUROSCI.0023-18.2018. doi: 10.1523/JNEUROSCI.0023-18.2018. PubMed |
| Higher-Order Thalamic Circuits Channel Parallel Streams of Visual Information in Mice. Bennett C, Gale SD, Garrett ME, Newton ML, Callaway EM, Murphy GJ, Olsen SR. Neuron. 2019 Apr 17;102(2):477-492.e5. doi: 10.1016/j.neuron.2019.02.010. Epub 2019 Mar 5. PubMed |
| Long-range inhibitory intersection of a retrosplenial thalamocortical circuit by apical tuft-targeting CA1 neurons. Yamawaki N, Li X, Lambot L, Ren LY, Radulovic J, Shepherd GMG. Nat Neurosci. 2019 Apr;22(4):618-626. doi: 10.1038/s41593-019-0355-x. Epub 2019 Mar 11. PubMed |
| Distinct Cortical-Thalamic-Striatal Circuits through the Parafascicular Nucleus. Mandelbaum G, Taranda J, Haynes TM, Hochbaum DR, Huang KW, Hyun M, Umadevi Venkataraju K, Straub C, Wang W, Robertson K, Osten P, Sabatini BL. Neuron. 2019 May 8;102(3):636-652.e7. doi: 10.1016/j.neuron.2019.02.035. Epub 2019 Mar 21. PubMed |
| Molecular and anatomical organization of the dorsal raphe nucleus. Huang KW, Ochandarena NE, Philson AC, Hyun M, Birnbaum JE, Cicconet M, Sabatini BL. Elife. 2019 Aug 14;8. pii: 46464. doi: 10.7554/eLife.46464. PubMed |
| Lateral hypothalamic fast-spiking parvalbumin neurons modulate nociception through connections in the periaqueductal gray area. Siemian JN, Borja CB, Sarsfield S, Kisner A, Aponte Y. Sci Rep. 2019 Aug 19;9(1):12026. doi: 10.1038/s41598-019-48537-y. PubMed |
| Stereotyped transcriptomic transformation of somatosensory neurons in response to injury. Nguyen MQ, Le Pichon CE, Ryba N. Elife. 2019 Oct 8;8. pii: 49679. doi: 10.7554/eLife.49679. PubMed |
| Corticostriatal Flow of Action Selection Bias. Hwang EJ, Link TD, Hu YY, Lu S, Wang EH, Lilascharoen V, Aronson S, O'Neil K, Lim BK, Komiyama T. Neuron. 2019 Dec 18;104(6):1126-1140.e6. doi: 10.1016/j.neuron.2019.09.028. Epub 2019 Nov 6. PubMed |
| Activation of parvalbumin-expressing neurons reconfigures neuronal ensembles in murine striatal microcircuits. Duhne M, Lara-Gonzalez E, Laville A, Padilla-Orozco M, Avila-Cascajares F, Arias-Garcia M, Galarraga E, Bargas J. Eur J Neurosci. 2020 Jan 4. doi: 10.1111/ejn.14670. PubMed |
| Mapping of Sensory Nerve Subsets within the Vagal Ganglia and the Brainstem Using Reporter Mice for Pirt, TRPV1, 5-HT3, and Tac1 Expression. Kim SH, Hadley SH, Maddison M, Patil M, Cha B, Kollarik M, Taylor-Clark TE. eNeuro. 2020 Apr 9;7(2). pii: ENEURO.0494-19.2020. doi: 10.1523/ENEURO.0494-19.2020. Print 2020 Mar/Apr. PubMed |
| Interneuron Desynchronization Precedes Seizures in a Mouse Model of Dravet Syndrome. Tran CH, Vaiana M, Nakuci J, Somarowthu A, Goff KM, Goldstein N, Murthy P, Muldoon SF, Goldberg EM. J Neurosci. 2020 Mar 25;40(13):2764-2775. doi: 10.1523/JNEUROSCI.2370-19.2020. Epub 2020 Feb 26. PubMed |
| GAD2 Expression Defines a Class of Excitatory Lateral Habenula Neurons in Mice that Project to the Raphe and Pontine Tegmentum. Quina LA, Walker A, Morton G, Han V, Turner EE. eNeuro. 2020 May 20;7(3). pii: ENEURO.0527-19.2020. doi: 10.1523/ENEURO.0527-19.2020. Print 2020 May/Jun. PubMed |
| Mouse Retinal Cell Atlas: Molecular Identification of over Sixty Amacrine Cell Types. Yan W, Laboulaye MA, Tran NM, Whitney IE, Benhar I, Sanes JR. J Neurosci. 2020 Jul 1;40(27):5177-5195. doi: 10.1523/JNEUROSCI.0471-20.2020. Epub 2020 May 26. PubMed |
| Mapping Cell Types and Efferent Pathways in the Ascending Relaxin-3 System of the Nucleus Incertus. Nasirova N, Quina LA, Morton G, Walker A, Turner EE. eNeuro. 2020 Nov 4;7(6). pii: ENEURO.0272-20.2020. doi: 10.1523/ENEURO.0272-20.2020. Print 2020 Nov/Dec. PubMed |
| Variation of connectivity across exemplar sensory and associative thalamocortical loops in the mouse. Mukherjee A, Bajwa N, Lam NH, Porrero C, Clasca F, Halassa MM. Elife. 2020 Oct 26;9. pii: 62554. doi: 10.7554/eLife.62554. PubMed |
| Parallel ascending spinal pathways for affective touch and pain. Choi S, Hachisuka J, Brett MA, Magee AR, Omori Y, Iqbal NU, Zhang D, DeLisle MM, Wolfson RL, Bai L, Santiago C, Gong S, Goulding M, Heintz N, Koerber HR, Ross SE, Ginty DD. Nature. 2020 Nov;587(7833):258-263. doi: 10.1038/s41586-020-2860-1. Epub 2020 Oct 28. PubMed |
| Area Postrema Cell Types that Mediate Nausea-Associated Behaviors. Zhang C, Kaye JA, Cai Z, Wang Y, Prescott SL, Liberles SD. Neuron. 2021 Feb 3;109(3):461-472.e5. doi: 10.1016/j.neuron.2020.11.010. Epub 2020 Dec 4. PubMed |
| Circuit and synaptic organization of forebrain-to-midbrain pathways that promote and suppress vocalization. Michael V, Goffinet J, Pearson J, Wang F, Tschida K, Mooney R. Elife. 2020 Dec 29;9:e63493. doi: 10.7554/eLife.63493. PubMed |
| Parabrachial opioidergic projections to preoptic hypothalamus mediate behavioral and physiological thermal defenses. Norris AJ, Shaker JR, Cone AL, Ndiokho IB, Bruchas MR. Elife. 2021 Mar 5;10:e60779. doi: 10.7554/eLife.60779. PubMed |
| Dysregulation of the mesoprefrontal dopamine circuit mediates an early-life stress-induced synaptic imbalance in the prefrontal cortex. Oh WC, Rodriguez G, Asede D, Jung K, Hwang IW, Ogelman R, Bolton MM, Kwon HB. Cell Rep. 2021 May 4;35(5):109074. doi: 10.1016/j.celrep.2021.109074. PubMed |
| Genetically identified neurons in avian auditory pallium mirror core principles of their mammalian counterparts. Spool JA, Macedo-Lima M, Scarpa G, Morohashi Y, Yazaki-Sugiyama Y, Remage-Healey L. Curr Biol. 2021 Jul 12;31(13):2831-2843.e6. doi: 10.1016/j.cub.2021.04.039. Epub 2021 May 13. PubMed |
| An excitatory lateral hypothalamic circuit orchestrating pain behaviors in mice. Siemian JN, Arenivar MA, Sarsfield S, Borja CB, Erbaugh LJ, Eagle AL, Robison AJ, Leinninger G, Aponte Y. Elife. 2021 May 27;10. pii: 66446. doi: 10.7554/eLife.66446. PubMed |
| Highly selective brain-to-gut communication via genetically defined vagus neurons. Tao J, Campbell JN, Tsai LT, Wu C, Liberles SD, Lowell BB. Neuron. 2021 Jul 7;109(13):2106-2115.e4. doi: 10.1016/j.neuron.2021.05.004. Epub 2021 Jun 1. PubMed |
| Organization of the inputs and outputs of the mouse superior colliculus. Benavidez NL, Bienkowski MS, Zhu M, Garcia LH, Fayzullina M, Gao L, Bowman I, Gou L, Khanjani N, Cotter KR, Korobkova L, Becerra M, Cao C, Song MY, Zhang B, Yamashita S, Tugangui AJ, Zingg B, Rose K, Lo D, Foster NN, Boesen T, Mun HS, Aquino S, Wickersham IR, Ascoli GA, Hintiryan H, Dong HW. Nat Commun. 2021 Jun 28;12(1):4004. doi: 10.1038/s41467-021-24241-2. PubMed |
| Lateral hypothalamic LEPR neurons drive appetitive but not consummatory behaviors. Siemian JN, Arenivar MA, Sarsfield S, Borja CB, Russell CN, Aponte Y. Cell Rep. 2021 Aug 24;36(8):109615. doi: 10.1016/j.celrep.2021.109615. PubMed |
| Evidence for Layer-Specific Connectional Heterogeneity in the Mouse Auditory Corticocollicular System. Yudintsev G, Asilador AR, Sons S, Vaithiyalingam Chandra Sekaran N, Coppinger M, Nair K, Prasad M, Xiao G, Ibrahim BA, Shinagawa Y, Llano DA. J Neurosci. 2021 Dec 1;41(48):9906-9918. doi: 10.1523/JNEUROSCI.2624-20.2021. Epub 2021 Oct 20. PubMed |
| A forebrain neural substrate for behavioral thermoregulation. Jung S, Lee M, Kim DY, Son C, Ahn BH, Heo G, Park J, Kim M, Park HE, Koo DJ, Park JH, Lee JW, Choe HK, Kim SY. Neuron. 2022 Jan 19;110(2):266-279.e9. doi: 10.1016/j.neuron.2021.09.039. Epub 2021 Oct 22. PubMed |
| Mapping of the Sensory Innervation of the Mouse Lung by Specific Vagal and Dorsal Root Ganglion Neuronal Subsets. Kim SH, Patil MJ, Hadley SH, Bahia PK, Butler SG, Madaram M, Taylor-Clark TE. eNeuro. 2022 Apr 13;9(2). pii: ENEURO.0026-22.2022. doi: 10.1523/ENEURO.0026-22.2022. Print 2022 Mar-Apr. PubMed |
| Synaptic determinants of cholinergic interneurons hyperactivity during parkinsonism. Padilla-Orozco M, Duhne M, Fuentes-Serrano A, Ortega A, Galarraga E, Bargas J, Lara-Gonzalez E. Front Synaptic Neurosci. 2022 Sep 6;14:945816. doi: 10.3389/fnsyn.2022.945816. eCollection 2022. PubMed |
| An airway-to-brain sensory pathway mediates influenza-induced sickness. Bin NR, Prescott SL, Horio N, Wang Y, Chiu IM, Liberles SD. Nature. 2023 Mar;615(7953):660-667. doi: 10.1038/s41586-023-05796-0. Epub 2023 Mar 8. PubMed |
| Inter-axonal molecular crosstalk via Lumican proteoglycan sculpts murine cervical corticospinal innervation by distinct subpopulations. Itoh Y, Sahni V, Shnider SJ, McKee H, Macklis JD. Cell Rep. 2023 Mar 28;42(3):112182. doi: 10.1016/j.celrep.2023.112182. Epub 2023 Mar 17. PubMed |
| Prox2 and Runx3 vagal sensory neurons regulate esophageal motility. Lowenstein ED, Ruffault PL, Misios A, Osman KL, Li H, Greenberg RS, Thompson R, Song K, Dietrich S, Li X, Vladimirov N, Woehler A, Brunet JF, Zampieri N, Kuhn R, Liberles SD, Jia S, Lewin GR, Rajewsky N, Lever TE, Birchmeier C. Neuron. 2023 Jul 19;111(14):2184-2200.e7. doi: 10.1016/j.neuron.2023.04.025. Epub 2023 May 15. PubMed |
| Neuropeptide Y-expressing dorsal horn inhibitory interneurons gate spinal pain and itch signalling. Boyle KA, Polgar E, Gutierrez-Mecinas M, Dickie AC, Cooper AH, Bell AM, Jumolea E, Casas-Benito A, Watanabe M, Hughes DI, Weir GA, Riddell JS, Todd AJ. Elife. 2023 Jul 25;12:RP86633. doi: 10.7554/eLife.86633. PubMed |
| Anterior hypothalamic parvalbumin neurons are glutamatergic and promote escape behavior. Laing BT, Anderson MS, Bonaventura J, Jayan A, Sarsfield S, Gajendiran A, Michaelides M, Aponte Y. Curr Biol. 2023 Aug 7;33(15):3215-3228.e7. doi: 10.1016/j.cub.2023.06.070. Epub 2023 Jul 24. PubMed |
| Peptidergic and functional delineation of the Edinger-Westphal nucleus. Priest MF, Freda SN, Rieth IJ, Badong D, Dumrongprechachan V, Kozorovitskiy Y. Cell Rep. 2023 Aug 29;42(8):112992. doi: 10.1016/j.celrep.2023.112992. Epub 2023 Aug 17. PubMed |
| Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images. Oostrom M, Muniak MA, Eichler West RM, Akers S, Pande P, Obiri M, Wang W, Bowyer K, Wu Z, Bramer LM, Mao T, Webb-Robertson BJM. PLoS One. 2024 Mar 29;19(3):e0293856. doi: 10.1371/journal.pone.0293856. eCollection 2024. PubMed |
| Trigeminal innervation and tactile responses in mouse tongue. Zhang L, Nagel M, Olson WP, Chesler AT, O'Connor DH. Cell Rep. 2024 Sep 24;43(9):114665. doi: 10.1016/j.celrep.2024.114665. Epub 2024 Aug 29. PubMed |
| A pontine-medullary loop crucial for REM sleep and its deficit in Parkinson's disease. Kashiwagi M, Beck G, Kanuka M, Arai Y, Tanaka K, Tatsuzawa C, Koga Y, Saito YC, Takagi M, Oishi Y, Sakaguchi M, Baba K, Ikuno M, Yamakado H, Takahashi R, Yanagisawa M, Murayama S, Sakurai T, Sakai K, Nakagawa Y, Watanabe M, Mochizuki H, Hayashi Y. Cell. 2024 Oct 31;187(22):6272-6289.e21. doi: 10.1016/j.cell.2024.08.046. Epub 2024 Sep 19. PubMed |
| Mixed representations of choice direction and outcome by GABA/glutamate cotransmitting neurons in the entopeduncular nucleus. Locantore J, Liu Y, White J, Wallace JB, Beron C, Kraft E, Sabatini B, Wallace M. Elife. 2025 Jan 21;13:RP100488. doi: 10.7554/eLife.100488. PubMed |
| Nucleus accumbens D2-expressing neurons: Balancing reward and licking disruption through rhythmic optogenetic stimulation. Requejo-Mendoza N, Arias-Montano JA, Gutierrez R. PLoS One. 2025 Feb 7;20(2):e0317605. doi: 10.1371/journal.pone.0317605. eCollection 2025. PubMed |
ATLAS: a rationally designed anterograde transsynaptic tracer.
Rivera JF, Huang H, Weng W, Sohn H, Girasole AE, Li S, Albanese MA, Qin M, Tao C, Klug ME, Rao S, Paletzki R, Herring BE, Kanoski SE, Zhang LI, Gerfen CR, Sabatini BL, Arnold DB.
Nat Methods. 2025 May;22(5):1101-1111. doi: 10.1038/s41592-025-02670-x. Epub 2025 May 1.
PubMed
Associated Plasmids |
| SeeThrough: a rationally designed skull clearing technique for in vivo brain imaging. Liu X, Uchigashima M, Oomoto I, Saito Y, Uchida H, Oginezawa S, Masuda K, Satoh D, Abe M, Sakimura K, Shimizu Y, Murayama M, Tainaka K, Mikuni T. Nat Commun. 2025 Aug 26;16(1):7584. doi: 10.1038/s41467-025-62836-1. PubMed |
| Basal forebrain cholinergic input mediates adaptive attention allocation to enhance olfactory discrimination. Garg R, Qiu Q, Yu CR. PLoS Biol. 2025 Sep 16;23(9):e3003374. doi: 10.1371/journal.pbio.3003374. eCollection 2025 Sep. PubMed |
| Dopaminergic short axon cells integrate sensory and top-down inputs to enhance discriminative learning in the mouse olfactory bulb. Garg R, Kumar V, Seiler JH, Wu Y, McClain M, Yi K, Yu CR. PLoS Biol. 2025 Sep 16;23(9):e3003375. doi: 10.1371/journal.pbio.3003375. eCollection 2025 Sep. PubMed |
| Presynaptic GABA(A) receptors control integration of nicotinic input onto dopaminergic axons in the striatum. Brill-Weil SG, Kramer PF, Yanez A, Lipkin AM, Clever FH, Zhang R, Khaliq ZM. Cell Rep. 2025 Dec 23;44(12):116555. doi: 10.1016/j.celrep.2025.116555. Epub 2025 Nov 27. PubMed |
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