We narrowed to 297 results for: hal.2
-
TypeBlog Post...would label everything but the CD8+ T cells (Figure 2). Even better, we can use the same fluorophore for...gating on the negative population. Figure 2: Dump gating labels all unwanted cell lineages with...capacity and speed of cells. (a) With each division half of the dye molecules are lost and the fluorescence...
-
New Optogenetic Tools for Cytoskeleton and Membrane Control
TypeBlog Post...to a specific area at the plasma membrane (Figure 2). Just express the plasma membrane-localized iLID ...cells will be ready for the spotlight. Figure 2: Opto-RhoGEFs to control Rho GTPase activity. A) Schematic... Ononiwu, F., Pal, D., Manikas, J., Taveras, C., Hall, N. A., Silva, J. D., Freshour, J., & Hehnly, H.... -
Antibody Validation for Flow Cytometry
TypeBlog Post...types within a sample to expected labeling (Figure 2). The panel of antibodies used in this approach should...the antibody in the same tube. Figure 2: Schematic showing the use of an orthogonal approach...antibody selectivity. Additionally, it can be a real challenge to troubleshoot RNAi failures. Potential explanations...cell survival or proliferation, an additional challenge is that only partial or ephemeral knockdown will...confirmation of antibody selectivity even more challenging. Correlation with RNA or Proteomic data from ...supportive of their specificity for the protein. A challenge to this approach is that the identity of the epitope...the specific sample and protocol. This can be a challenge to confirm. As such, the approach used may need... -
Hot Plasmids - February 2022
TypeBlog Post...acceptable variations in DR sequences. Figure 2: comparison of Cas 9 vs. Cas 12a expression cassettes...SNAP-tag, and HaloTag fusions, while the anti-HA frankenbodies include mEGFP, mCherry, and HaloTag. ...screening technique, researchers identified a synthetic lethal interaction between MARCH5 and WSB2 genes using...fusion proteins, such as Cas9 and Cas12a, creates challenges for in vivo delivery and cell engineering applications..., is composed of only 529 amino acids, less than half the size of either Cas9 or Cas12a. Despite its small... -
Summer SciComm Series: A PhD in Science Communication
TypeBlog Post...perceived climate change risks. Nature Climate Change, 2(10), 732-735. doi:10.1038/nclimate1547 Kunda, Z. (...sources of information if those sources affirm or challenge their beliefs. I asked participants to read short...read an abstract for a study with findings that challenged their beliefs, they were much more likely to ...a phenomenon called “motivated reasoning,” the catchall term for a range of neat little tricks our minds... -
From our Table to Yours: An Inside Look at Lunch at Addgene
TypeBlog Post...and trophies are awarded and coveted. I’ve only won 2 trophies over the years, which is either an indication...different labs to chat informally about their challenges, successes, and expertise. Who knows what could... -
Hot Plasmids: FRET-Based Biosensors
TypeBlog Post...MagFRET: The First Genetically Encoded Fluorescent Mg(2+) Sensor. PLoS One. 2013 Dec 2;8(12):e82009. doi: ...problem that he considers “one of the greatest challenges of neuroscience.” Hot plasmids: Twitch sensors...trial and error. Transition metals also present challenges in that they are found in cells at much lower... -
The Power Behind NGS Plasmid Validation: seqWell
TypeBlog Post...from a single Illumina MiSeq® run. As shown in Fig. 2, below, differences in input concentration across ...seqWell, Inc., our mission is to overcome crucial challenges in NGS by developing technologies that can help...problem in multiplex NGS library preparation. The challenge here is that, as more samples are sequenced simultaneously... -
Hot Plasmids - March 2020 - base editors, GEVI, MoClo, and optogenetics
TypeBlog Post...higher quenching of mScarlet emission. Figure 2: Ace-mScarlet is a fusion between the voltage-sensitive...each half with PhyB or PIF6, phytochrome-like fusion proteins from the plant Arabidopsis thaliana. In ...identical in sequence to the unmodified enzyme. Each half of the base editor is fused to a fast-splicing split...induces PhyBΔ and PIF6APB binding, bringing the two halves of Cre together. Image from Eisenhoffer et al.,... -
pSiM24: Simplifying Plant Genetic Engineering
TypeBlog Post...Agrobacterium infection. At approximately 7 kb, pSiM24 is 2 and 6 kb smaller than commercially available pCAMBIA...paper at Addgene. Other relevant blog posts 3 Challenges in Plant Synthetic Biology Quick, Versatile Plant... -
Using Ultrasound to Image Bacteria in vivo: Acoustic Reporter Genes
TypeBlog Post...E. coli: acoustic gene 1 (arg1) and acoustic gene 2 (arg2). The key difference between arg1 and arg2 vesicles...widely available imaging platform: ultrasound. Challenges of in vivo imaging with existing bacterial reporters... -
Channelrhodopsins with improved light sensitivity for minimally-invasive optogenetics
TypeBlog Post...still depolarize neurons at lower MOIs. Figure 2: ChRgers are delivered by intravenous injection into...optogenetics. Challenges of engineering channelrhodopsins There are three main challenges to engineering...overcome channelrhodopsin design challenges To overcome these challenges, the Arnold and Gradinaru Labs ...lower multiplicity of infection (MOI) makes it challenging for ChR2(H134R) to function because it’s lower... -
Hot Plasmids - December 2019 - CRISPR pooled library, LipoGlo, CRISPRa, and Voltage Imaging Tools
TypeBlog Post...retroviral library was used to transduce T helper type 2 (Th2) cells from mice that constitutively express ...these indicators difficult to work with. The Gottschalk lab has surveyed a range of microbial rhodopsin...previously reported for other organisms, and the Gottschalk group hypothesizes that this may be due to different... -
27 Hot Plasmids from 2016
TypeBlog Post...backbone, which expresses the gRNA from a Drosophila U6:2 promoter and Cas9 from the actin 5C promoter. Addgene...backbones for lentivirus LV 1-5 and retrovirus RV 2-5 were constructed. The authors then used GMAP assembly...engineering (MAGE) (1). MAGE uses recombineering (2) to simultaneously incorporate multiple single-strand...number of tandemly expressed gRNAs respectively) and 2) the size of the deletion. Smaller deletions generally...quantification of enhancer activity have remained challenging due to the variable availability of enhancer ...pTALYM3, pTALYM4 Boris Greber pTAL7a, pTAL7b Michal Zurovec pBlue-TAL Nathan Lawson pJDS Series ...degredation is the speed at which it works--typical half lives of AID-tagged proteins after the introduction... -
Zebrafish as a Model for Behavior: Swimming into the Optogenetic Spotlight
TypeBlog Post...light sensing proteins. Furthermore, during the first 2 weeks of life, larvae already exhibit distinct behaviors..."Optical control of zebrafish behavior with halorhodopsin." Proceedings of the National Academy of Sciences... -
Understanding GPCR Signaling Using TRUPATH
TypeBlog Post...dissociation by bioluminescence resonance energy transfer 2, or BRET2. With binding of the drug, the alpha and...constructs, localization of the Rluc8 was more challenging. The Roth lab used structure-guided protein engineering... -
Genetically-encoded Sparse Cell Labeling - A SPARC of Innovation
TypeBlog Post...(S) labeling of the cell population. Figure 2: Dense (c), intermediate (d), and sparse (e) labeling...titration of the AAV. So far, tools to overcome this challenge in Drosophila require heat-shocking the system... -
Bringing Sustainable Practices to the Lab: Recycling
TypeBlog Post...the world’s population, we account for an estimated 2% of global plastic generation. Less than 9% of plastics...Labconscious. If you’re inspired by this post then I challenge you to take to action! These days, it’s important... -
10 Ways to Share Your Science!
TypeBlog Post...but also something about how science really works. 2) Read science writing in magazines or newspapers... Consider participating in a future SciFund Challenge. While the goal is ostensibly to get some funding... -
Safe Port in a Storm...How Addgene is Weathering the Pandemic
TypeBlog Post...majority of deposited materials to study SARS-CoV-2 would be fully open and available to industry requestors...difficult time. One function that rose to the challenge was our Finance Team. With Addgene closed for ...