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We narrowed to 750 results for: Dos

Showing: 221 - 240 of 750 results
  1. The CRISPR Software Matchmaker: A New Tool for Choosing the Best CRISPR Software for Your Needs

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    Blog Post
    ...they do in the software. Most sgRNA design tools require the user to specify an organism. They do this...what the parameters represent. The best learn-by-doing tool is E-CRISP. The authors have made a huge effort...for labs: Define what you need the software tool to do before going shopping for one. Use the CRISPR Software...criteria. Repeat until you have found the best tool. Do several experiments and use the results to re-evaluate...make a difference in our experiments and lives. To do this effectively, there needs to be good communication...
  2. Viral Vectors 101: Optogenetic Tools

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    Blog Post
    ...based gene editing. But, how do you decide which tools to use, and what do you need to know about them ...Which Method Should I Choose? GPCRs: How Do They Work and How Do We Study Them? Optogenetics + CRISPR, Using...similar to what the endogenous binding partner would do. This allows precise control over when and where ...
  3. Sequencing Options for CRISPR Genotyping

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    Blog Post
    ... cost. The problem with these assays is that they do not provide sequence-level data. They also have a... a limit of detection of ~5%. This means they do not reliably detect editing events that occur in less...variable) Sequence-level data, extremely sensitive Do not sequence all DSBs, may miss unpredicted off-target...Tsai et al. 2015). Additionally, current algorithms do not take into account other elements, including those...GUIDE-seq and BLESS detect double-stranded breaks and do not require high sequencing read counts making them...
  4. Twenty Years of Sharing: Expanding Accessibility

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    Blog Post
    ...take to reduce them. But we do know we will continue to ask “What can we do to make our materials both ...by researchers all over the world — and we really do mean all over (Figure 3). We continue to add new ...more reproducible science and learn what Addgene can do to help. More resources on the Addgene blog Twenty...
  5. AAV Titers: Where Do They Come From And What Do They Mean?

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    Blog Post
    ...Systems, Harvard University.    Which titer do people usually report? Addgene and other viral vector...values to determine accuracy and reliability. When doing this, we make a judgement call on whether the two...improvement over qPCR (Taylor et al., 2017). What do Addgene AAV titers mean for your experiments? Because...reordering the same virus feel free to email us and we can do our best to send you a particular lot (if we still...
  6. Synthetic Biology - Overview

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    Collection
    ...Link opens in a new window) — Open access journal Do you have suggestions for other plasmids that should...
  7. Viral Vectors 101: Viral Applications

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    Blog Post
    ...we understand what genes do! Viruses have several options to allow you to do exactly that: shRNAs are...clinical promise moving forward. What viruses can do for you Whether you are interested in basic science...
  8. Plasmids 101: The protein expression toolbox

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    Blog Post
    ...inducible? How long do you need control? Will temporary control (a few days) be enough, or do you want a permanent...101: Repressible Promoters CRISPR 101: Which Cas9 Do I Choose for my Experiment Additional resources ...
  9. Plasmids 101: Screens vs. Selections

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    Blog Post
    ...phenotype in the surviving population. Selections do require there to be a culture condition that can ...sound like a great shortcut, right? Who would ever do a screen when a selection can get you to the answer...culture condition which eliminates manipulations that do not affect the function of interest. An example where...
  10. Giving gRNAs a Facelift - Synthetic and Beyond

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    Blog Post
    ... synthetic modifications, specifically ones which do not contain a 5’ triphosphate in the gRNA, reduce...many suitable dyes to choose from and you can opt to do-it-yourself with a kit or purchase it commercially...but you can still choose what dye to use  What to do once you’ve chosen a gRNA and modification(s) Congratulations...
  11. Plasmids 101: Screening Strategies Used in Plasmid Cloning

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    Blog Post
    ...need to sort through them to find the desired clone. Do your selection, then screen Why add a screen to your...plasmids that contain the gRNA (white) from those that do not (blue). Let’s take a look at a few screening ... containing plasmids with inserts from those that do not is by using a restriction digest. The key is ...
  12. Troubleshooting Your Plasmid Cloning Experiment

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    Blog Post
    ...Golden Gate etc.), and try to find the simplest way to do it (i.e. avoid assembling too many fragments at once...by methylation like XbaI, ClaI, etc. If you are doing multiple digestion be sure that the buffers and ...plasmid, and analyze it using the following steps: Do a single or double digest to be sure that the plasmid...
  13. Reproducibility for Everyone: Lessons from an Open Science Collaboration

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    Blog Post
    ...groups and individuals with similar ideas to actually do something about it. Building a diverse team with ...There are many brilliant minds out there, but how do you get them to connect? Through networking of course...solving a community’s issue without involving them can do more harm than good. Check out this webinar for more...
  14. Cas13d: Small RNA-targeting CRISPR enzymes for transcriptome engineering

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    Blog Post
    ...previously identified Cas13a-c orthologs, but they do include HEPN nuclease domains characteristic of the...here Find the Konermann et al. Plasmids here How do Cas13d enzymes compare to other Cas13s? Like other... and is thus HEPN-independent. These enzymes also do not require a protospacer flanking sequence, so you...
  15. Form Your Own Peer Mentoring Group: A How-To Guide for Scientists

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    Blog Post
    ...” of mentors as one key to their success. But how do you find these elusive teachers, supporters and advisors...be read or watched during the meeting.  Scientists do better with process, so don’t just get together and...blog in this series will have more ideas on what to do once you are in a mentoring relationship.  Celebrate...
  16. Plan Your Experiment

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    Collection
    ... model a specific disease or process of interest. Do you want to: Generate complete and permanent loss...target cells are not transcribing DNA to mRNA, nor do they need to translate mRNA to protein. Instead, ...a lack of efficient target cleavage in cells that do express both Cas9 and gRNA. Before choosing a validation...
Showing: 221 - 240 of 750 results