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Showing: 321 - 340 of 883 results
  1. Hot Plasmids Spring 2024

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    Blog Post
    ...screens Improved prime editor PE7 Antibodies to facilitate SARS-CoV-2 research New viral vector preps of...-024-07259-6. PMID: 38570691. Antibodies to facilitate SARS-CoV-2 research   By Ashley Waldron Ready-to-use...HaloTag, Figure 4), they determined that an A122D mutation in the rhodopsin domain conferred several new ...potentials of fast-spiking neurons. The same A-to-D mutation in the related voltage indicator Ace2N-mNeon also...-microglia cells.      Figure 5: A) Representative confocal images showing GFP expression from...System By Vaibhav Kawde To circumvent the payload limitations of traditional AAVs, the Becirovic Lab has developed...
  2. CRISPR 101: Which Cas9 Do I Choose for My CRISPR Experiment?

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    Blog Post
    ...engineered by introducing Cas9-mediated frameshift mutations in the gene of interest. The genomic target for...for Cas9 and the introduction of this mutation can be any site early in the coding region of the gene ... experiments may require the introduction of a mutation at a specific site e.g., deleting the catalytic...modification at a defined amino acid to mimic a patient mutation or maybe to disrupt a catalytic residue. Good ...to either cytosine or adenosine deaminases to facilitate a single base pair edit. (Cytosine deaminases...of activators include the SunTag system which facilitates recruitment of multiple activation domains to...
  3. Changing Labor Laws Bring Increased Postdoc Wages

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    Blog Post
    ...under this ruling, regardless of visa or fellowship status, in addition to certain staff scientists and those... salary was set at $47,476 and the date for implementation was set for Dec 1 2016. In order to be exempted...paid. Institutional salary policies are one indicatator of how salaries may changes due to the FLSA. ... The University of Notre Dame sets no minimum, stating that while they recommend NRSA levels, postdocs...not to be tracked. University of Buffalo and Ohio State both have minima of $30,000, and raising salaries...addition, both Brown and Brandeis universities have stated that they consider postdocs paid on stipends to...
  4. Tips for CRISPR Gene Editing in Mice

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    Blog Post
    ...how many pups will contain a mutation and many of the mice with the mutation will be homozygous for it in.../Cas9 for gene editing has expanded since its adaptation for use in mammalian cells in 2012-2013. Researchers...region. Or you may even wish to generate a point mutation and need to focus your attention to that particular...will require you to house mice that may have no mutation, costing money and space. As a rule, screen all... et al. "One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome...
  5. Important Considerations in Optogenetics Behavioral Experiments

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    Blog Post
    ...Garret D., et al. "Excitatory transmission from the amygdala to nucleus accumbens facilitates reward seeking...to your field. Ultimately, your question should dictate your behavioral output. However, regardless of ...behavioral test in which your circuit of interest is putatively involved in regulating the behavioral output....2) there is some problem with the technical implementation of your optogenetics setup (viral expression...and anxiety along the dorsoventral axis of the dentate gyrus." Neuron 77.5 (2013): 955-968. PubMed PMID...
  6. Plasmids 101: E. coli Strains for Protein Expression

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    Blog Post
    ... with sub-optimal codon usage (Table 1) A few mutations are common to all or most expression strains to...levels including:  ompT: Strains harboring this mutation are deficient in outer membrane protease VII, ...methylate DNA. dcm: Similarly, strains with this mutation are unable to methylate cytosine within a particular...Tetracycline RecA-deficient; best for plasmids with repetative sequences.  F- ompT lon hsdSB (rB- mB-) gal ... of unstable proteins Tuner (DE3)   Contains mutated lac permease whch allows for linear control of ...Contains highly active thioredoxin reductase and glutathione reductase to faciliate proper folding; may increase...
  7. Targeting HIV-1 with CRISPR: Shock and Kill or Cut it Out?

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    Blog Post
    ...and CRISPR/Cas9 have also been used to create mutations in genes essential to HIV-1 replication. However...CRISPR therapies through PAM or seed sequence mutations. Multiple gRNAs could be used to combat this problem...LTRs or essential genes. Many of these escape mutations were located near the Cas9 cut site, leading Wang...escape occurs in an animal model. If these escape mutations are frequent, the dCas9-mediated “shock and kill... Zhang T, Li F, Yang W, Kaminski R, Fagan PR, Putatunda R, Young WB, Khalili K, Hu W. CRISPR/gRNA-directed... S, Wainberg MA, Liang C. CRISPR/Cas9-Derived Mutations Both Inhibit HIV-1 Replication and Accelerate ...
  8. Performing In Vivo CRISPR Screens Using the FITS Approach

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    Blog Post
    ...CRISPR screens in immune cells have identified many putative regulators of immunity. However, in vitro screens...approaches; (4) encodes a Thy1.1 selectable marker to facilitate the isolation of modified cells; and (5) is compatible...molecular identifiers, which can improve the statistical power of in vivo screens. Figure 1: Using...used the pRDA_526 vector to knock out 30 genes putatively involved in CD8+ T cell responses to cancer. ...pRDA_526 vector. Moreover, the screen identified putative novel regulators of CD8+ T cell responses in tumors...
  9. Keeping Up With CRISPR/Cas9

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    Blog Post
    ...that CRISPR's could be used to correct disease mutations, both in mice and in human cells. But that important...genes in one step without producing off-target mutations," Sha was quoted as saying when the news first...blogger Caroline LaManna put it well: "Wow, custom mutations in monkeys already. I know we've discussed it ...news was circulating. Scientists at North Carolina State, in the labs of Chase L. Beisel and Rodolphe Barrangou...structure may help us engineer around the current limitations of the Cas9 complex," said study author F. Ann...
  10. Viral Vectors 101: Optogenetic Tools

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    Blog Post
    ...Bicistronic vectors combine excitation and inhibition by using both excitatory and inhibitory channels activated...light within a specific range of wavelengths. Excitatory channels allow positively charged ions such as... the opsin.      Figure 2: Diagram of excitatory (ChR2) activation by light showing ions flowing...signaling cascade that may go awry in a disease state.      Figure 4: Example of an intracellular..., H. (2019). Light-activated chimeric GPCRs: Limitations and opportunities. Current Opinion in Structural...
  11. A Control for All Seasons

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    Blog Post
    ...positive and negative controls to ensure proper interpretation of results. A positive control is generally...the precision and accuracy and therefore the statistical power of an experiment. Technical replicates ...autofluorescence, also interferes with data interpretation and can be addressed with a label control. ...autofluorescence and should be considered in the interpretation of results. Include the label control for all...membrane. A loading control is critical for data interpretation, especially when changes in protein expression...Waters, Jennifer C. “Accuracy and Precision in Quantitative Fluorescence Microscopy.” Journal of Cell Biology...
  12. PiggyBac-ing Through the Genome Editing Field

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    Blog Post
    ...and a transposase. The piggyBac™ transposase facilitates the integration of the transposon specifically...completely seamless manner, leaving no sequences or mutations behind. Furthermore, piggyBac™ offers a large ...achieved using the piggyBac™ transposase, which facilitates direct integration of the donor-transposon (carrying...standard homology directed repair template to facilitate the selection of cells containing your desired...excision-only piggyBac™ transposase (PBx), which contains mutations making it competent for excision, but defective...primarily two other ways to create specific point mutations by gene editing. First, instead of using piggyBac...
  13. Plasmids 101: Restriction Cloning

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    Blog Post
    ...to be placed into the backbone in the proper orientation. For instance, if you were cloning a gene into...and HindIII. To place your gene in the proper orientation downstream of the promoter, you can add an EcoRI... promoter and placing the gene in the proper orientation. You then add ligase to the mixture to covalently... the backbone in either a forward or reverse orientation so you’ll need some way to verify that the insert...generally lyse the bacteria; add chemicals to precipitate out the high molecular weight genomic DNA; filter...your ligation, then you will need to verify the orientation of your insert. You may want to design a diagnostic...
  14. Chemogenetics Guide

    Type
    Guide
    ... tools. Studies of GPCRs led to development of mutated receptors that while unresponsive to endogenous...experimental setup) were not possible. To overcome this limitation, the inhibitory KORD DREADD was developed to ...PSEMs). PSAM domains were first named for the mutations that allowed them to respond to their cognate ...anti-smoking drug varenicline. This PSAM carries mutations at L131G, Q139L, and Y217F and is termed PSAM4...Krashes, M. J., … Roth, B. L. (2015). A New DREADD Facilitates the Multiplexed Chemogenetic Interrogation of...
  15. Chemogenetics Guide

    Type
    Guide
    ... tools. Studies of GPCRs led to development of mutated receptors that while unresponsive to endogenous...experimental setup) were not possible. To overcome this limitation, the inhibitory KORD DREADD was developed to ...PSEMs). PSAM domains were first named for the mutations that allowed them to respond to their cognate ...anti-smoking drug varenicline. This PSAM carries mutations at L131G, Q139L, and Y217F and is termed PSAM4...Krashes, M. J., … Roth, B. L. (2015). A New DREADD Facilitates the Multiplexed Chemogenetic Interrogation of...
  16. Finding Your Science Policy Path

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    Blog Post
    ...with local representatives, or even run for office yourself! Plus, at the federal or state level some ... data gathering, regulatory efforts, policy implementation, program management, communications, diplomacy...branch or in Congress, or can also happen at the state and local level. The big secret about science policy...your career through engagement with your local or state governments. Most communities have opportunities...available science policy fellowships in federal, state, and local governments, professional societies, ...
  17. Antibodies 101: Validation

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    Blog Post
    ...for your protein has been mutated using CRISPR/Cas9. You check the mutation and it causes a large deletion...expression of your target or CRISPR/Cas9 to create mutations that essentially eliminate expression of the target...Capture MS Strategies This approach uses immunoprecipitation to capture proteins from a sample using the...analysis. Example: You are planning an RNA-immunoprecipitation experiment and want to validate that your... protein of interest. So you perform an immunoprecipitation with your antibody and send the captured ...
  18. A Practical Guide to Optimizing AAV DIO and FLEx Vector Expression

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    Blog Post
    ...pair, and flips the transgene into the correct orientation for transcription. Upon recombination one of ...no longer able to flip back into the inverse orientation (See Plasmids 101: FLEx Vectors). While this ...'s say the lox2272, that are in the opposite orientation (direction of arrows) the inverted transgene ...transgene is reverted into the sense orientation and one of the unused (loxp) sites will be flanked by two lox...lox sites now in the same orientation. Next, the loxp site is excised since it is between two lox2272 sites... sites in the same orientation preventing the transgene from reverting. Figure created with BioRender....
  19. Plasmids 101: Using Transposons in the Lab

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    Blog Post
    ...= transposon right-left orientation. T-LR= transposons left-right orientation. Image from Leo Vo.   ... its preferred target integration site: TNA(C/G)TTATAA(G/C)TNA. Tol2 can deliver 10-11 kB to mammalian...that detect loss-of-function or gain-of-function mutations. In these screens, the transposons encode reporter..., and have potential to overcome some of the limitations of viruses. TEs have a large payload, up to 100...such as the ~11 kB cDNA for dystrophin, the gene mutated in muscular dystrophy, require truncation to fit...
  20. CRISPR 101: Cas9 Nickase Design and Homology Directed Repair

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    Blog Post
    ...By mutating one of two Cas9 nuclease domains, researchers created the CRISPR nickase. Nickases create...SpCas9 nickases as examples for this post. The D10A mutation inactivates the RuvC domain, so this nickase cleaves... only the target strand. Conversely, the H840A mutation in the HNH domain creates a non-target strand-...accomplished with either a PAM-in or PAM-out orientation. Just as the names imply, PAM-out designs have...there are no available guides close to the desired mutation site. Quick tips for nickase design Ready to ...
Showing: 321 - 340 of 883 results