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...of off-target DNA editing and on-target indel formation. For the safety of KJ’s experimental treatment...cellular models of KJ’s mutation, SpG Cas9 + ABE8e performed the best when paired with the highest-efficiency...produced efficient editors, the Kleinstiver set performed best when paired with the V106W mutation (described... assessed for off-target risks, such a modular platform could accelerate the development of genetic therapies...

...mapping and modern sequencing Restriction mapping informs on DNA sequence through the use of restriction ...upon the incorporation of a ddNTP. Researchers perform four different reactions, one for each radiolabelled...techniques still have useful applications and have informed many current techniques. For example, restriction...sequencing technology." Genomics, proteomics & bioinformatics 13.1 (2015): 4-16. PubMed PMID:  25743089 ....

...are wild-type unless indicated otherwise fhuA (formerly tonA) ferric hydroxamate uptake, iron uptake receptor...Propagation of ccdB-containing plasmids Hte   High transformation efficiency deoR constitutive expression of...+), λ– EPI300   Cloning large inserts and transformation of large plasmids. F- mcrA Δ(mrr-hsdRMS-mcrBC...For a more comprehensive list and additional information, visit OpenWetWare's E.coli genotype resource...

...several brain regions where other serotypes may perform better (3). Brain Region  Optimal Serotype ...expressed that anatomical assessments can be easily performed too. While I implied that axoplasmic transport...vectors that will have substantially improved performance profiles and should be suitable for genome editing...and Mark A. Kay. "Future of rAAV gene therapy: Platform for RNAi, Gene Editing and Beyond." Human Gene...

...restriction enzymes (Weber et al., 2011). It can be performed at multiple levels to generate anything from individual...expression in the biotech workhorse yeast — K. phaffii (formerly known as Pichia pastoris). If your goal is protein...vectors. The Plant Parts III kit has a focus on transformation and genome engineering. This is a specialized.... “A Unified Multi-Kingdom Golden Gate Cloning Platform.” Scientific Reports, vol. 9, no. 1, Springer ...

...shared information about recent CRISPR deposits from Arlene Sharpe’s lab. X-Chime and Performing In Vivo...Embracing Serendipity Nicolas Mathis, who shared information on his open software that predicts efficiencies...

...students transform them into different strains of E. coli,” says Westenberg. During the transformation experiment...genetic backgrounds of the host strains affect transformation efficiency.  Aside from the Streak Plate Challenge...

...of empirically derived and/or prior knowledge to inform on the qualities of what determines good sgRNA ...tools provide results to the user in different formats. This can have a large impact on downstream results...save”. Trends: Most tools provide tabular HTML formatted output. Surprisingly only 2 tools provide FASTA...idea of what to look out for. Top tools for bioinformaticians: For flexibility in your own analysis, you...

... ship individual plasmids as transformed bacteria in stab culture format. Our lab team creates stabs for... for each plasmid being shipped based on the information in our lab software, labeling stabs with barcodes...

...out an updated AAV Data Hub to share curated information about AAV usage in research applications. Scientists...what challenges remain in materials sharing, information sharing, and research reproducibility while expanding... and distributing high-quality materials and information. As a scientist, I have seen both the potential...

...official document listing materials and pricing information that is sent from a buyer to a seller. However...your order online has some benefits. All of the information that is entered at checkout is used to generate... process, the Addgene Help Center is full of information about how to deposit plasmids, store your plasmids...

... list of citing articles under the "Resource Information" heading in the right column of the plasmid page... the "# References" link under the "Resource Information" heading, you'll be directed to a page listing...also included a feature to help save you from performing any unnecessary cloning - the list of "Associated...

...your AAV plasmid of choice for more information on its performance.   Titers We expect titers for plasmids... and serotype. Please note that Addgene cannot perform functional or in vivo testing. We recommend you...

...retrograde tracing: visualizing neurons that received information from a region. In the example shown in Figure...by sharing not only reagents, but also method information. To complement these efforts, we’re beginning...through our recently launched AAV Data Hub, an open platform where researchers using AAV from our viral service...

...recommended reagents) along with information critical for the performance of a reagent, e.g., antigen retrieval...Knowledge-Base is an invaluable resource for anyone performing multiplexed imaging, not just IBEX. The IBEX ...

...includes an antibiotic resistance marker. After transformation, plate the cells on medium containing the corresponding...selection will select for cells that have been transformed with the plasmid backbone (with or without your...scientists are finding more and more ways to creatively perform selections in plasmid cloning. Additional resources...

...a Biorender watermark, which is usually ok for informal settings like lab meeting presentations. You can...collections of images are easy to download in a .png file format. Images are under a Creative Commons 3.0 license...good idea to double-check the image’s license information before using it. Have a tip for using one of ...

... extracellular surface of the GPCR causes a conformational change in the GPCR, leading to the activation...that the potency and efficacy is typically non-uniform across the transducerome for a specific receptor-ligand...Strachan RT (2020) TRUPATH, an open-source biosensor platform for interrogating the GPCR transducerome. Nat ...

...and improves overall communication.  Maintain informal communication In between recurring meetings, you...this casual communication reflects the type of informal communication you’d likely have with members of...equipment, or ensure that techniques are being performed the same way at different sites. I did a lab exchange...

...how we use next generation sequencing results to perform quality control on deposited plasmids. We’ve also...verify that our sequencing results match sequence information contributed by the depositor, published backbone...region is present in the plasmid, we might need to perform a restriction digest to confirm the size of the...