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We narrowed to 152 results for: acr.4

Showing: 61 - 80 of 152 results
  1. Twenty Years of Sharing: Addgene's Viral Vector Service

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    Blog Post
    ...and AAV1 are the most requested serotypes (Figure 4), our catalog includes vectors in a variety of serotypes... and the systemic capsid PHP.eB.   Figure 4: A) Cumulative AAV preps for the seven most popular...an AAV in a specific experimental setup. Teams across Addgene have worked hard to ensure that the service...
  2. Antibodies 101: Reading a Flow Plot

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    Blog Post
    ...and isolated.  Following a gating strategy Figure 4 shows a gating strategy from a published experiment...are very close to each other.        Figure 4: Gating strategy used in Barlow-Anacker et al., 2017... the X axis may be presented. A horizontal line across the peak will indicate the cut-off value for a ...
  3. Important Considerations in Optogenetics Behavioral Experiments

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    Blog Post
    ...might be contextual fear conditioning (reviewed in [4]). Contextual fear conditioning is a behavioral experiment...PMID: 23473324. PubMed Central PMCID: PMC3595120. 4.Mattis, Joanna, et al. "Principles for applying optogenetic...examples I’m personally interested in include: intracranial self-stimulation (ICSS) and place preference...
  4. How to Negotiate a Successful Lab Start Up Budget

    Type
    Blog Post
    ... importantly, it’ll help you define salary costs. 4. Ascribe a cost structure associated to these tools...others will help prove that you will be an asset. 4. Always ask, “Is there an alternative?” As scientists...early investigators making unnecessary short term sacrifices that hurt their goals, rather than focusing on...
  5. Easi-CRISPR: Generating Knock-In and Conditional Mouse Models

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    Blog Post
    ...facing towards or away from each other.  Figure 4: How to design a conditional allele with Easi-CRISPR...Biol. 18 (2017) (1):92. DOI: 10.1186/s13059-017-1220-4 PubMed PMID: 28511701 PubMed Central PMCID: PMC5434640... the separated guide RNA components (crRNA and tracrRNA) for maximum Easi-CRISPR efficiency. Easi-CRISPR...However, Quadros et al. saw success with Easi-CRISPR across three independent core facilities for 13 projects...
  6. Sequencing Options for CRISPR Genotyping

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    Blog Post
    ...settings are often limited to off-target sites of <4 bp. The off-target list is also generally weighted...PMID: 25409780. PubMed Central PMCID: PMC4246457. 4. Davidson CJ., et al. "Improving the limit of detection...key to address these concerns as CRISPR use grows across the life sciences and to establish standardized...methods. They identify possible off-target sites across the genome and pinpoint the location of mismatches... Digenome Seq 0.1% Cell-free (in vitro) Works across all cell types Must be verified with cell-based...
  7. Antibodies 101: Fc Effector Functions

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    Blog Post
    ...cytotoxicity against tumor targets. Nat Med. 2000 Apr;6(4):443-6. doi: 10.1038/74704. PMID: 10742152. Dunkelberger...phagocytosis (ADCP), Fcγ receptors on macrophages bind IgG antibodies. The macrophages then engulf and digest the...antibody-dependent cellular phagocytosis for effective macrophage-based cancer immunotherapy.Sci. Adv.8,eabl9171...
  8. Prime Editing: Adding Precision and Flexibility to CRISPR Editing

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    Blog Post
    ...Nature Biotechnology, 41(4), 500–512. https://doi.org/10.1038/s41587-022-01527-4 Additional resources on... 149–157. https://doi.org/10.1038/s41586-019-1711-4 Chen, P. J., Hussmann, J. A., Yan, J., Knipping, F... 2.3- to 5.1-fold (though up to 45-fold) higher across different genomic sites compared to PE1 (Anzalone...
  9. Cutting Once Is Harder Than It Sounds: Your Guide to Minimizing Off-Target Effects

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    Blog Post
    ...— can be cleaved without off-target effects. Step 4: Validation made easy Grow clonal populations from...modified sgRNAs (Kulcsár et al., 2020). Figure 4: On-target activity of 9 IFNs with a 21G-sgRNA on ...fidelity to a given sequence often comes at the sacrifice of some or all on-target activity. The balance...
  10. CRISPR Guide

    Type
    Guide
    ...naturally-occurring Acr (Anti-CRISPR) proteins can help control CRISPR activity. Acr proteins have evolved...Nature Biotechnology . 41 (4), 500–512. https://doi.org/10.1038/s41587-022-01527-4 PMID: 36424489 Genome-wide...More commonly, Acrs inhibit multiple species of Cas enzymes, such as AcrIIA2 and AcrIIA4, isolated from...There are rare cases where Acr can work with multiple types, such as AcrVA3.1, which inhibits both Cas12a...Similarly, some Acr proteins are specific to a particular species of CRISPR enzymes, such as AcrIIA7–10, which... protein AcrIIA4 with the photosensitive LOV2 domain . Several labs have also controlled Acr activity ... to protect against these foreign nucleic acids. Acr family members inhibit CRISPR by a variety of mechanisms...
  11. A Tour of Addgene's Most Popular Pooled Libraries

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    Blog Post
    ...Ordering” to see what options are offered. Figure 4: Screenshot of the Addgene website. Let us know...library: the Cultivarium MACKEREL Library, whose acronym means Modular, NGS-trACKable ExpRession Element...gate cloning. This toolkit is designed to be used across many species of bacteria. Surface display libraries...
  12. Components of CRISPR/Cas9

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    Blog Post
    ...mediated DNA damage is a DSB within the target DNA ~3-4 nucleotides upstream of the PAM sequence. Cas9 Species...hybrid of the tracrRNA and the crRNA. The “direct repeat region” combined with the tracrRNA forms the scaffold...which defines the genomic target for Cas9, and the tracrRNA which acts as a scaffold linking the crRNA to ...for processing pre-crRNA into mature crRNA and tracrRNA binding. The spacer regions, on the other hand..., the “direct repeat region” combined with the tracrRNA forms the scaffold portion of a gRNA and the “...and the direct repeat region. B) RNase III, the tracrRNA and Cas9, bind to these transcripts and C) cleave...cleave them leaving mature crRNAs bound to the Cas9/tracrRNA complex. D) The mature crRNA is used to guide ...
  13. Behind the Scenes of Addgene’s New Look

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    Blog Post
    ...simplicity. Figure 4: Addgene's new icon. You’ll be seeing this icon across our website, showing...showing cohesion across platforms from our blog to our help center. We hope you’ll start to look forward to...grow, so does our ability to power that sharing — across more materials, more contexts, and more of the ...
  14. Plasmids 101: Repressible Promoters

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    Blog Post
    ... Jan;103(1):303-313. doi: 10.1007/s00253-018-9485-4. Epub 2018 Nov 3. PMID: 30392122. Pfeiffer, Barret... system in Caenorhabditis elegans.” Nat Methods 9(4) (2012): 391-5. PubMed PMID: 22406855. PubMed Central... gene expression and tracing of gene expression across development. One common binary system is the GAL4...
  15. Technique: Probe Phage Genomes for Host Binding Proteins

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    Blog Post
    ...order to protect their DNA from host cell nucleases (4). To further complicate matters, even when sequenced...PMID: 26761028. PubMed Central PMCID: PMC4728577. 4. Schmitz, Jonathan E., et al. "Rapid DNA library construction...transformants for isolated colonies (150-200 per plate) across 20 fresh selective plates. Step 2: Express random...
  16. Antibodies 101: Epitope Tags

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    Blog Post
    ...same name. The tag has a net negative charge with 4 negatively charged and 1 positively charged amino ...target-specific antibodies and have been widely used across species and applications. In this blog, we will...has been used with moderate to high success rates across all applications. You can find FLAG antibodies ...
  17. Another Pathway into Cells: iTOP

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    Blog Post
    ..., Johansson M. Nat Biotechnol. 2001 Aug;19(8):713-4. PubMed.  ...studies showed that iTOP functions through macropinocytosis. D’Astolfo et al. tested iTOP in a series...Protein Delivery Techniques: Introduction of macromolecules into cultured mammalian cells by osmotic lysis...
  18. 7 Tips to Secure a STEAM Internship This Summer

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    Blog Post
    ...that can help you craft a solid personal statement.  4. Letters of recommendation wisdom  Reach out to 2-... classroom cannot offer. Furthermore, companies across most industries tend to hire their former interns...student should use these guidelines consistently across a number of years as you apply for internships,...
  19. Cas13d: Small RNA-targeting CRISPR enzymes for transcriptome engineering

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    Blog Post
    ...Protein.” Mol Cell. (2018) pii: S1097-2765(18)30173-4. PubMed PMID: 29551514 Plasmids from this paper ...similar cleavage products even when guides were tiled across a target RNA, indicating that this enzyme does ...Unlike Cas9, for which efficiency varies widely across guide RNAs, each guide tested with CasRx yielded...
Showing: 61 - 80 of 152 results