...planarian genes, we encourage you to deposit them back with Addgene and expand the number of genes that other...expression of specific gene expression. The 49 deposited plasmids enable students to study gene expression and...planarians. For example, the gene Piwi labels neoblast cells and the gene Prohormone convertase 2 (pc2...beta-catenin. Other gene targets do not require amputation to be visible. For example, odf2 gene knockdown results...and functions of key regeneration-related genes in four inexpensive and commercially available planarians...types and for viewing how gene expression changes through time or after genetic manipulation. The technique...Scientists routinely use techniques to alter gene expression or to label specific cells, but there are...

...antibiotic resistance genes. Genes that are targets of antibiotics are often essential genes which creates a.... ICEBs1 carries the genes needed for conjugation, but can also carry cargo genes, like Mobile-CRISPRi...if that gene is a target of an antibiotic. For example, let’s take a look at the essential gene folA which...targeted essential and non-essential genes with two guides per gene. The library was grown in glucose minimal...essential genes were less represented while bacteria containing guides targeting non-essential genes remained...does not disrupt gene function and is stable and active for greater than 50 generations. Figure ...tools scientists can use to study them. For example, gene knockdown with CRISPR interference (CRISPRi) has...

...replication and viral gene transcription (6). The EBOV genome contains seven viral genes, each flanked by ...sequence (gene start) and a transcription termination/polyadenylation signal sequence (gene end). A minigenome...Figure 1). All viral genes are removed and replaced by a single (non-viral) reporter gene (e.g. firefly luciferase...luciferase or eGFP) flanked by the EBOV-specific gene start and gene end sequences. Thus, the minigenome contains...Cloning the viral genes in this plasmid would be more difficult compared to if each gene were encoded in...transcribe the reporter gene (e.g. firefly luciferase). The polymerase recognizes the gene start signal and ...of the reporter gene. The polymerase will elongate the mRNA until it reaches the gene end signal, where...

...depending on its orientation to your gene. T7lac High levels of gene expression Promoter from T7 bacteriophage...modulating gene expression through varied inducer concentrations. trp High levels of gene expression...human or mouse) General expression mRNA Mammalian promoter from phosphoglycerate kinase gene.  Constitutive...deacetylation. Ubc General expression mRNA Mammalian promoter from the human ubiquitin C gene Constitutive  ... human beta actin General expression mRNA Mammalian promoter from beta actin gene Constitutive  Ubiquitous... Requires the presence of Gal4 gene to activate promoter. Ac5 General expression mRNA Strong insect ...Actin 5c gene Constitutive  Commonly used in expression systems for Drosophila. Polyhedrin General expression...

...the env gene containing the rev response element (RRE), an internal promoter, and the desired gene (transfer...-1 genome containing all viral genes with the exception of the env gene (packaging plasmid), and 3) the...used to express your gene of interest either constitutively or inducibly. If your gene of interest is toxic...expression of your gene. The addition of Dox in the culture will then repress your gene of interest. This... Youichi Suzuki (2011). Gene Regulatable Lentiviral Vector System, Viral Gene Therapy, Dr. Ke Xu (Ed.)...harmful genes into a transfer vector. Lentiviral particles expressing proto-oncogenes or oncogenes for instance...safe use in a clinical setting. In this generation, the HIV Tat gene (previously used to drive expression...

...70% of human genes have a counterpart in zebrafish. Understanding the function of these genes in fish will...unknown functions for genes, and lays the groundwork for understanding the gene networks that regulate...zebrafish-specific gene expression databases that provide information about when and where genes are active in...investigations. Genetic resources for zebrafish A common approach to unravel the gene networks that drive...model organism is its amenability to genetic manipulation. Tools for gene manipulation together with information...Additional mutagenesis projects have since been initiated and today thousands of mutations in genes affecting...other resources. Targeted gene deactivation tools for zebrafish Random mutagenesis screens provided a major...

...Codon optimization is an approach in gene engineering to improve gene expression by changing synonymous ... worth codon optimizing a human gene for expression in E. coli. Genes are also optimized for expression...ThermoFischers GeneArt Gene Synthesis NovoPro Labs Codon Optimization Tool (ExoOptimizer) Genewiz Codon Optimization...Slimko and Lester, 2003).  Addgene has a large selection of codon optimized genes, so check out our inventory... for a molecular biologist who wants to express genes from one organism in another? Let’s take a look ...correlated with codon bias across all endogenous genes in E. coli and S. cerevisiae (Tuller et. al., 2010...usage frequency in a reference of highly expressed genes (Sharp and Li, 1987). In 2000 the Ikemura lab created...

...among other things) gene delivery, generating pluripotent stem cells, and developing gene therapies for monogenic...and lentiviral vectors that are used for gene regulation, gene of interest expression, knockout, and screening...Experimental uses include: Cre-dependent gene expression, gene knockout, and selection marker removal. ...Expressing your gene of interest pLenti-puro (Plasmid #39481) You can clone your gene of interest into...split-vector systems’ by separating viral genes and transgene expression across several plasmids. The most... host genome and thereby enable long-term stable gene expression. Gamma-retroviral vectors are derived...diseases. Additionally, retroviral vectors can regulate gene expression by delivering shRNA or miRNA. The ever...

... anti-CRISPR genes in bacteriophages infecting Pseudomonas aeruginosa . Anti-CRISPR genes employ varied...especially amenable to genetic screens. Pooled gRNA libraries can be used to identify genes that are important...system - utilizing various CRISPR-associated (Cas) genes to not only store a record of invading phages but...Csf1) Type VI (Cas13) Fighting Back: Anti-CRISPR Genes in Phage The CRISPR adaptive immune system seems...produces insertions/deletions disrupting a target gene. On the other hand, if a repair template with homology...according to this template, allowing for precise gene editing. These edits can include mutations seen ...given phenotype. Current libraries are available for gene knockout, as well as transcriptional activation ...

... on therapeutic strategies that use gene replacement therapy, gene editing, MECP2 reactivation, RNA editing...Novartis and rebranded to Novartis Gene Therapies, and Taysha Gene Therapies, founded on Gray’s work, ...protein 2 (MECP2) gene, Rett Syndrome is a rare, progressive, neurodevelopmental genetic disorder that affects...of Rett Syndrome research, the role of the MECP2 gene, and highlights some of the latest breakthrough ...painstaking work trying to isolate the causative gene for Rett Syndrome, Huda Zoghbi's lab discovered ...the first disease-causing mutations in the MECP2 gene leading to Rett Syndrome (Amir et al., 1999). We...global transcriptional regulator of thousands of genes. Studies have suggested roles in transcriptional...

...with the genes in the compacted region and results in a loss of gene expression. In this way, genes in compacted...the corresponding gene products due to the same region, but not the same exact genes, being improperly...? What exactly is epigenetics? Epigenetics is the study of heritable changes in gene expression that do...makes  genes less transcriptionally active. The role of epigenetics in studying disease Epigenetic changes...your genes documentary PBS Additional Resources at Addgene Find the Ting Lab plasmids at Addgene Browse... change in genotype. Epigenetic modifications play a large role in turning genes ‘off’ and ‘on’, signaling...fascinating examples of epigenetics in the form of imprinting. In imprinting, one copy of a gene (either the maternal...

...trying to target every gene in the genome, or a specific class of genes? Addgene currently carries several...within the target gene. CRISPR can also be used to activate or repress target genes without permanently... gRNAs targeting the same gene can be strong evidence that a particular gene is actually important for...2) What genetic modification are you trying to make? Addgene carries CRISPR libraries for gene knockout...which the underlying genetic cause is not entirely known. Identifying which genes are important for a ... experiment is to generate and screen a population of mutant cells to identify genes involved in a particular...Currently, Addgene carries CRISPR libraries that target mouse, human, fly, E. coli, and T. gondii genes.  2...

... ID Plasmid Gene/Insert Promoter Selectable Marker PI Publication Bacteria ID Plasmid Gene/Insert Promoter...Plant ID Plasmid Gene/Insert Promoter Selectable Marker PI Publication Yeast ID Plasmid Gene/Insert Promoter...Selectable Marker PI Publication Zebrafish ID Plasmid Gene/Insert Promoter Selectable Marker PI Publication...Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting RNA Targeting RNA Editing Other...and adenine base editors (ABEs) — can be used to generate single base pair edits without double stranded...editing systems include targeted AID-mediated mutagenesis (TAM) from the Chang lab and CRISPR-X from the...out our Suggest a Plasmid form or e-mail help@addgene.org to help us improve this resource!...

...prevent your gene from being up-regulated. For instance, generally, the more highly expressed a gene is under... research CRISPRa for specific gene targets CRISPR activation for genes with known functions has the potential...uses for Cas9 activators is in genetic screening. gRNAs targeting every gene in the human genome for example...multiple gene loci simultaneously, CRISPRa can also be used to map molecular pathways and genetic interactions...promoter of another gene, thereby driving aberrant transcription. That being said, we generally pick guides by...constructs allow for the upregulation of essentially any gene by fusing mutants of Cas9 deficient in DNA cutting...potential to be used in therapeutics, as it can increase gene expression at certain loci to create changes in ...

...for the EGFP Reporter Gene Guide RNA expression plasmids for endogenous human genes Guide RNA expression...these vectors for efficiently modifying endogenous genes in zebrafish (Hwang and Fu et al., Nat Biotechnol...expression plasmids for endogenous zebrafish genes...

...developed four acoustic reporter gene (ARG) plasmids to better monitor gene expression in vivo using ultrasound...plasmids at Addgene. Liu Q et al., Neuron. 2019. PubMed PMID: 30704911. Acoustic reporter genes for noninvasive...by Lukas Morgan  Listen to the acoustic reporter gene podcast segment In recent years, scientists are ...through a host organism, the expression of some genes can change depending on the location. Current methods...of microbes rely heavily on fluorescent protein genes. These optical reporters have limited deep-tissue...ultrasound. These ARG plasmids contain genes for “gas vesicles,” a gas-filled protein structure that water-bound...demonstrates engineered gas vesicles as the first reporter genes using ultrasound and provide a major benefit to ...

...RNA-mediated gene silencing mechanism. It is a useful tool to investigate the roles of specific genes or to ...to knockdown genes with potentially harmful mutations in therapeutic settings. As a tool in mammalian cell...Lentiviral vectors are a preferred method for long-term gene silencing. Once the viral vector is taken up by ...RNA (shRNA): design, delivery, and assessment of gene knockdown . Methods in Molecular Biology, 629 , ...Additional Resources Addgene Resources pLKO.1 cloning vector protocol Other Addgene viral protocols Lentiviral...mammalian RNA interference (RNAi) experiments at Addgene; browse by constitutive lentiviral shRNA, cre-regulated...

...highly expressed genes (Emilsson and Kurland, 1990). Controlling gene expression through gene sequence - Proteins...because you optimize a gene with one of these tools, it doesn’t necessarily mean the gene is going to express...5. Maertens, Barbara, et al. "Gene optimization mechanisms: A multi‐gene study reveals a high success ...getting your genes of interest codon optimized by ordering plasmids containing them from Addgene. If a plasmid...plasmid at Addgene contains a gene that’s been codon optimized for a particular organism, this will sometimes...available from Addgene now have full sequence data, we recommend directly analyzing gene sequences for ...changing conditions - Organisms often need to express genes at different levels under different conditions. ...

...ideal for large gene transfer. The M24 promoter provides constitutive, high-level gene expression and ...further customizing gene expression. Sahoo et al. have tested the system with genes up to 4 kb in length...versatile gene expression vector for transient assays as well as stable expression of foreign genes in plants...Scientists have worked to optimize this system for gene transfer, studying the stability of modified Ti plasmids...versatile binary Ti vector for both transient and stable gene expression applications in plants. This smaller,...and many plant scientists want to transfer large genes, smaller binary vectors with a larger cloning capacity.... They also replaced the promoter regulating the gene of interest with a constitutive, robust M24 promoter...

...and easily manipulate specific genes. But what if you want to study genes all across the genome? Two new...7,114 human genes. Unlike the GeCKO library, each library has been enriched for different gene targets. ...designed to target a smaller set of genes and it includes more guides per gene. The Sabatini/Lander library ...screen for genes involved in bacterial toxin resistance, identifying 4 previously unknown genes.  “With ... function of both protein-coding genes as well as non-coding genetic elements.” These lentiviral libraries...library, which they call GeCKO, targets 18,080 human genes with 64,751 unique guide sequences to enable both...including Feng Zhang used the GeCKO library to identify genes essential for cell viability in cancer and pluripotent...