We narrowed to 319 results for: INO
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TypeBlog Post...discovered in picornaviruses, are short (about 20 amino acids) and produce equimolar levels of mulitple ... type or experimental conditions. Peptide Amino acid sequence* T2A: (GSG) E G R G S L L T C G ...
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Isolating Genomic Regions of Interest with the CRISPR System
TypeBlog Post... then be recognized by a DNA-binding molecule (Hoshino and Fujii, 2009). Other forms of enChIP, that do...PMID: 23849981. PubMed Central PMCID: PMC3770145. Hoshino, Akemi, and Hodaka Fujii. "Insertional chromatin... -
Tips for arabidopsis transformation
TypeBlog Post...of culture you are using and whether you are inoculating from a frozen stock or a colony from an LB plate...plate. In my hands, a 5 mL starter culture inoculated from a colony on a plate will reach an optimal density... -
Don’t FRET: Bimolecular Fluorescence Complementation Makes Visualizing Protein-Protein Interactions Easy
TypeBlog Post...regulate numerous cellular functions, including ubiquitinoylation, kinase signaling, integrin signaling, and...fluorescent signal. As for linker sequences, the amino acid sequences RSIAT and RPACKIPNDLKQKVMNH have ... -
CRISPR 101: RNA Editing with Cas13
TypeBlog Post...(ADAR). Such a system would convert adenine to inosine, which the translational machinery treats like ... ADAR1 and ADAR2, which deaminate adenosine to inosine in RNA, creating a functional A->G change. They... -
CRISPR Antimicrobials
TypeBlog Post...Figure 1). Citorik et al. targeted beta-lactam and quinolone resistance genes in E. coli using plasmid and ...plasmid. In the case of the genomically encoded quinolone resistance, mediated by a single base pair change... -
Plasmids 101: Protein tags
TypeBlog Post...affinity tag, generally a relatively small sequence of amino acids, is basically a molecular leash for your protein...; good for antibody-based detection SUMO ~100 amino acid protein 12 Stability At N-terminus, promotes... -
Fluorescent Proteins 101: Green Fluorescent Protein (GFP)
TypeBlog Post...Protein? GFP is a ~27 kDa protein consisting of 238 amino acids derived from the crystal jellyfish Aequorea...formed from a maturation reaction of three specific amino acids at the center of the protein (Ser65, Tyr66... -
What's Your Organism? Expanding Genomic Tools via the NSF EDGE Program
TypeBlog Post... currently for terrestrial frogs. Cnidarian-Dinoflagellate symbionts (Virginia Weis) Sea anemone Aiptasia...Cas in lizards. The Menke Lab was able to make an albino lizard with targeted mutations. Now what? What ... -
The PAM Requirement and Expanding CRISPR Beyond SpCas9
TypeBlog Post...packaged into adeno-associated virus (AAV). At 984 amino acids in length, Cas9 from Campylobacter jejuni ...editing than SpCas9 (Kim et al., 2016). The Acidaminococcus sp. BV3L6 Cas12a, AsCpf1, uses a 5'-TTN PAM... -
Finding nucleic acids with SHERLOCK and DETECTR
TypeBlog Post...Shmakov S, Makarova KS, Semenova E, Minakhin L, Severinov K, Regev A, Lander ES, Koonin EV, Zhang F (2016...Semenova E, Minakhin L, Joung J, Konermann S, Severinov K, Zhang F, Koonin EV (2015) Discovery and Functional... -
Twenty Years of Sharing: Expanding Accessibility
TypeBlog Post... a Primer Creating Bacterial Glycerol Stocks Inoculating a Liquid Bacteria Culture Collections ... Primers for PCR Agarose Gel Electrophoresis Inoculating Liquid Bacterial Cultures Restriction Digest ... -
CRISPR Activation: A Practical Guide
TypeBlog Post...der Meer D, Dow D, Buser-Doepner C, Bertotti A, Trusolino L, Stronach EA, Saez-Rodriguez J, Yusa K, Garnett...10.1016/j.cell.2014.09.029 Konermann S, Brigham MD, Trevino AE, Joung J, Abudayyeh OO, Barcena C, Hsu PD, Habib... -
Plasmids 101: E. coli Strains for Protein Expression
TypeBlog Post...recommended for toxic proteins BL21-A1 Tetracycline Arabinose-inducible expression of T7 RNAP; IPTG may still...expression strain to make sure they are compatible. An arabinose-inducible plasmid will not express in an IPTG ... -
Plasmids 101: The Promoter Region – Let's Go!
TypeBlog Post...expression Promoter of the arabinose metabolic operon Inducible by arabinose and repressed catabolite repression... -
The Fluorescent Vegetables in Aptamer Soup
TypeBlog Post...GFP called 3,5-difluoro-4-hydroxybenzylidene imidazolinone (DFHBI). DFHBI is membrane permeable and non...fluorescence of 3,5-difluoro-4-hydroxybenzylidene-imidazolinone-2-oxime (DFHO), a fluorophore modified from ... -
An Integrin Antibody Toolkit from IPI
TypeBlog Post... that bind the Arginine-Glycine-Aspartate (RGD) amino acid sequence in their ligands. This well-known ... antigen-binding fragments (Fabs) that bound an amino acid region displayed by a subset of the RGD-binding... -
Proximity Labeling: A Powerful Tool for Protein Complex Purification and Proteomic Mapping
TypeBlog Post...peroxide. This radical reacts with electron-rich amino acids such as tyrosine on neighboring proteins resulting...aeolicus, which lacks the DNA-binding domain (233 amino acids) found in the E. coli version. It also contains... -
Site Directed Mutagenesis by PCR
TypeBlog Post...palindromic and repetitive sequences, but if present, a minor extension can usually ensure that the 3’-base(s)... of the most popular approaches for introducing minor modifications to a plasmid template. Many thanks... -
Plasmids 101: Common Lab E. coli Strains
TypeBlog Post... ara disruption of arabinose metabolism pathway Inability to utilize arabinose as a carbon source ...