...Information Science and Technology 60.4 (2009): 858-862. 2. Van Noorden, Richard. "Interdisciplinary research...Librarianship and Scholarly Communication 2.2 (2014): 2. Additional Resources on the Addgene Blog 6 Tools...published in scientific journals flies under the radar and gains little notice. A 2009 research study found...

...replication.   Figure 2: Prokaryotic chromosomal replication. Adapted from BioRender template. ...Microbiology and Molecular Biology Reviews: MMBR, 62(2), 434–464. https://doi.org/10.1128/MMBR.62.2.434-464.1998...

...delivering an AAV construct expressing channelrhodopsin 2 (ChR2), a blue light sensitive cation channel, fused...researcher. There existed, therefore, a need for an adaptable tool that could continuously monitor multiple ...- Overview of the neural and gut fiber system (adapted from Sahasrabudhe et al., 2023).   To develop...

...PMID: 30083608. PubMed Central PMCID: PMC6070312. 2. Stark, Jessica C., et al. "BioBits™ Bright: A fluorescent...high school classrooms, but it could be widely adapted and used in a variety of settings. If you are a..., if you are a fellow researcher interested in adapting your research ideas into hands-on educational ...

...that you can easily spot the colors and text. Tip 2: Use electronic to-do lists to access your tasks on...pharmaceutical companies, academic labs have been slower to adapt, likely due to the necessary time and resource investment...

...neuron-astrocyte, and cancer-stromal cell pairs.   Figure 2: Schematic of the interaction between the sender cell... leading to the degradation of the AID-tagged protein. To quantify protein degradation the Ward lab used... that allows for both spatiotemporal protein degradation and quantification of this depletion using imaging-based... inducible degron sequence) tagged proteins. Degradation of your protein interest would also result in...system that brings Cas9 to ubiquitin ligase for degradation.      New from the viral service By Jason ...

... ligands can elicit varying degrees of β-arrestin-2 recruitment to receptors, indicating their agonistic...fluorescent labels. In Nature Methods (Vol. 19, Issue 2, pp. 149–158). Nature Research. https://doi.org/10.1038...Lavis Lab (Grimm et al., 2017). These dyes were adapted into ligands for HaloTag® and are currently offered...doi.org/10.1128/spectrum.03690-23 Mahmoudian, J., Hadavi, R., Jeddi-Tehrani, M., Mahmoudi, A. R., Bayat,...

... high-priced commercial devices.     Fig. 2: Workflow for open software (left) vs. open hardware...their devices, which makes it very difficult to adapt the device to one's own samples and limits the use...to as 'frugal science', existing components are adapted and combined with creativity and feedback from ..., for example, can also be printed quickly in Madagascar. Platforms that allow for on-going creativity...

...responsible for that differentiation.   Fig. 2: Single cell RNA-seq clustering of cells transduced...RNA-seq was performed to map TFs to cell fates. (Adapted from Joung et al.)    This atlas linked TF ... color coded nominated reference cell types.  (Adapted from Joung et al.)    Putting MORF to work ...

...retroviral library was used to transduce T helper type 2 (Th2) cells from mice that constitutively express ...Nature Communications 2019. Pubmed PMID: 31366908 Adapting sigma54-dependent transcription for CRISPR activation...must be σ54-dependent and the system may not be adaptable to distantly related species from E. coli. This...

...Enhanced CRISPR-based DNA demethylation Figure 2: The components of Casilio-ME1. Image from Taghbalout...ctrA gene expression using various dCas9. Image adapted from Guzzo et al., 2020. Caulobacter crescentus...

...Genome Editing and The CRISPR Software Matchmaker Day 2: Homology directed repair: CRISPR 101: Homology Directed...? I certainly didn’t, but now we can with Cas13b/ADAR constructs from the REPAIR (RNA Editing for Programmable...

...156–159. https://doi.org/10.1016/0003-2697(87)90021-2 Chomczynski P, Sacchi N (2006) The single-step method...groups are susceptible to hydrolysis and heat degradation. Furthermore, RNases, or enzymes that degrade...samples cold and work quickly to mitigate RNA degradation. Make sure to use DEPC-treated or RNAse free ...store them in a -80°C freezer to prevent RNA degradation. They will degrade in a -20°C freezer.   RNA...

...unc- 119 + selection." MicroPublication 1 (2018): 2–3. Wang, Han, et al. "cGAL, a temperature-robust GAL4...for the Auxin Inducible Degradation System (AID) The Dernberg lab in 2015 adapted the AID system discovered...and new tools for conditional expression and degradation. These workshops not only highlighted new tools...  Zhang, Liangyu, et al. "The auxin-inducible degradation (AID) system enables versatile conditional protein...

...systems utilize with type I-F Cascades. Figure 2: Cascade complex from CRISPR type I-E. Created with...binding and subsequent DNA degradation appears to be conserved. This DNA degradation portion can be bypassed.... These alterations are achieved through DNA degradation, thanks to the unique capabilities of Cas3 and...of DNA, Cascade caught up to it, and then DNA degradation continued. However, Cas3 cannot bind DNA on its...Hopefully more people will want to utilize Cas3’s degradative power in the future! References and Resources.... (2018). Structure basis for RNA-guided DNA degradation by Cascade and Cas3. Science, 361(6397). https...., Sonpho, E., Xu, H., Sasakawa, N., Naito, Y., Nakada, S., Yamamoto, T., Sano, S., Hotta, A., Takeda,...

...backbone, which expresses the gRNA from a Drosophila U6:2 promoter and Cas9 from the actin 5C promoter. Addgene...backbones for lentivirus LV 1-5 and retrovirus RV 2-5 were constructed. The authors then used GMAP assembly...engineering (MAGE) (1). MAGE uses recombineering (2) to simultaneously incorporate multiple single-strand...number of tandemly expressed gRNAs respectively) and 2) the size of the deletion. Smaller deletions generally...catalytic domain of RNA editing enzyme, ADAR. This RBP-ADARcd fusion protein irreversibly edits adenine...unsuspected genes with known roles in ER-associated degradation (ERAD) that positively regulate the ability of...2015. PubMed PMID: 26264872 Rapid, conditional degradation of essential proteins using Cas9-based AID tagging...

...project my team & I have poured our hearts into for 2 yrs) has 200K+ figures by 95K+ scientists 👨🏽‍🔬👩‍...workspaces at a time and workspaces are only downloadable in a small file size with a Biorender watermark...

...development and therapy. Nat Rev Drug Discov (2017) 16(2):89-100. DOI: 10.1038/nrd.2016.238 Additional resources...precise disease genetics. Since CRISPR has been adapted for use in primary cells, many tissue types, and...

...1) or added using PCR-based amplification (Option 2). Advantages of Golden Gate cloning Golden Gate cloning...few steps. More recently, CRISPR technology has adapted Golden Gate cloning for inserting the appropriate...single gRNA-expressing plasmid, but it can also be adapted to express multiple gRNAs. Addgene has two Golden...

...inhibit editing (Anzalone et al., 2019). Figure 2: Starting lengths for optimizing your pegRNA primer... motifs at their 3′ end to protect them from degradation. When designing epegRNAs with large structured...different strategies for protecting pegRNAs from degradation. Created with BioRender.com. That’s all ...A., Sahin, M., Osborn, M. J., Weissman, J. S., Adamson, B., & Liu, D. R. (2021). Enhanced prime editing...., Bauer, D. E., Marson, A., Parsons, L. R., & Adamson, B. (2024). Improving prime editing with an endogenous...