We narrowed to 888 results for: URE

...never expected to be in this here and now. Our closure was earlier than most companies. Since the start...around the world mobilized on COVID-19 research, cures, and diagnostics. Almost immediately we began to...receiving packages. So the entire team mobilized to figure out how to deliver when labs finally opened.  I...Addgene’s Technology Transfer Team also moved fast to ensure that the majority of deposited materials to study...the dramatic reduction in distribution, we had to figure out a way to maintain our services during the crisis...accelerating research. Yet this was still not enough to ensure we could keep up with demand and keep new projects...scientific sharing of materials for the foreseeable future. ...

...expression of XFPs is possible by simply introducing a mixture of XFP genes. Stochastic multicolor labeling is...trans-activator Brainbow) (Sakaguchi et al., 2018) (Figure 1). Once introduced, fluorescent proteins were ...AAVs (prepared with Addgene #104110 - #104112) (Figure 2). We’ve also created constructs with containing...Kohl et al., 2014) (Addgene #104106 - #104108) (Figure 3) that can be introduced using in utero electroporation...samples and visualize. For more details on this procedure, find the protocol here.   Tips and troubleshooting... al. "Improved tools for the Brainbow toolbox." Nature methods 10.6 (2013): 540. PubMed PMID: 23817127...of fluorescent proteins in the nervous system." Nature 450.7166 (2007): 56. PubMed PMID: 17972876. Kohl...

...probe for imaging nascent and mature HA-tagged proteins in vivo. Nature Communications, 10(1). PubMed ...fragments (scFvs) (Inbar et al., 1972) are fused to mature fluorophores, and can bind and light up epitope...., 2004). This scFv hybrid provides the probe structure and stability from the scaffold as well as specificity...it is translated quickly by the ribosome. This feature provides HA frankenbody the ability to bind nascent... wide range of protein dynamics in vivo. In the future, this stitching technique could be applied to other...applications: CDR grafting to stable frameworks and structure-based framework engineering. Methods, 34(2), 184...

...Using Existing in silico Algorithm Infrastructure and a Vision for Future Enhancements. Frontiers in drug...immunogenicity score (Mattei et.al., 2022).    Figure 1: Generation of immunogenicity scores by predictive...individually-specific factors, such as previous exposures to that specific antigen, pre-existing conditions...factors that in silico prediction algorithms fail to capture. In vitro evaluation of ‌therapeutic immunogenicity...various components of the immune system. Figure 2: In-vitro models for immunogenicity prediction...and the advancement of precision medicine in the future.   Madhura Acharya is a former co-op and current...

...proteins and the potential for their work to enable future discoveries. Read on to learn more about Xin and...keep checking back in with the Addgene blog for future award opportunities. Xin Zhou: Fluorescent Light-inducible...active site. In these fusions, ultraviolet light exposure caused oligomerization of the Dronpa domains thereby...active site and shutting off the enzyme. Later exposure to cyan light stopped Dronpa oligomerization and...active site and still block enzyme function upon exposure to ultraviolet light. Previous iterations of FLiPs... needed an efficient and cost-effective way to measure the production of HMOs. Current HPLC-MS and fluorophore-based...ACS meeting. She hopes these biosensors and her future work with HMOs will enable researchers to engineer...

...be available from their original sources. Figure 1: Biological repositories that distribute mouse... such example is cell lines. The American Type Culture Collection (ATCC) is a private, nonprofit repository... community. Addgene was awarded a Fast Grant to ensure that the scientific community will continue having...have already been requested from Addgene. Figure 2: Total COVID-19 plasmids requested from Addgene...making materials available rapidly to scientists (Nature Biotechnology 2020). The continued success of repositories... repositories, during the pandemic and in the future, depends on support from the scientific community...fundamental part of the scientific research infrastructure. References Chu H, Chan JF-W, Yuen TT-T, ...

...difficult if your work is based in the lab. If you’re unsure what to do during this period, check out these ... Organize data that you already collected into figures for papers or presentations. Learn a new skill ...novel findings. Most Micropublications contain one figure. If you aren’t there yet, write introductions to...while. Getting started early on introductions and literature reviews could make the months leading up to your...about reproducibility best practices Support your future experiments and other researchers by implementing...Also consider using this framework to design your future experiments.  Use Addgene’s AAV Data Hub. You can...can search the AAV Data Hub for tools to use in future experiments. If you’ve used Addgene’s AAV tools...

...make sure to rinse off the surface of the filter membrane with the surrounding solution to ensure excess...concentration to avoid over-diluting, and make sure to remeasure your titer after diluting to confirm. Luke...drastically with lower titers. As you can see in figure 2, the expression from the 5x1011 titer was essentially... in a roughly 6-fold increase in expression [3, Figure 2]. Note how expression increases exponentially...additional best practices. Keep your cells happy - Make sure your cells are as healthy as can be to prepare them...

...requires an NGG PAM to recognize the target. Osamu Nureki’s lab engineered SpCas9 (SpCas9-NG) with relaxed... with high precision - a valuable optogenetics feature when studying neuronal activity. The researchers...MerMAIDs plasmids at Addgene Opperman J et al., Nature Communications, 2019. PubMed PMID: 31346176. Using... of loops. These loops not only provide a 3-D structure for packing genomic DNA into nuclei, but are also...that heterodimerizes with CIBN upon blue light exposure (see Fig 1*). When the group targeted the enhancer...system promises to be a better model for the dynamic nature of genomic looping due to it’s briefer time scale...scale and its inducible and reversible nature. Find the LADL plasmids at Addgene Kim et al., Nat Methods...

...education for future generations. All suggestions, tips and critiques to improve the educational nature of this...in these courses get plenty of theory in their lectures, but it can be difficult to determine how much...hands-on, it will be “brains-on”! I know that even lectures should be “brains-on”, but as much as I try being...have never experienced 100% student engagement. I figured, an engaging card game could help me get the engagement...students to use concepts learned from previous lectures, articles and books. A game where they would use...spurred by this “gamification” will lead to new cures for disease someday! Accessing and modifying BUILD...

...from last meeting. Use some positive peer pressure to make sure everyone completes their assigned items ... on details that do not yet need to be decided. Figure out what you need to accomplish to get to the next...toward a solution. At the end of the meeting, make sure to thank everyone for their participation and offer... are working on. Building this into the agenda ensures that everyone gets a chance to talk and less vocal... so will the length of your group meetings. Make sure to keep them manageable. At Addgene, teams can add...all-company meetings, monthly still works best. Figure out what works for you for each of your meeting...

...have stable ssDNA secondary structure — for example, the stem-loop structure of transcriptional terminators...higher temperature at which Gibson assembly takes place may limit formation of secondary structures at the...with 5′ overhangs generated either by annealing a mixture of products or from incomplete PCR — although higher...effective with as little as 3 ng of DNA!) Figure 1: Schematic of SLIC. To start the SLIC cloning...successful, but at a lower efficiency (~20%). Figure 2: Schematic of multicomponent assembly with SLIC...

...surface of most immature B cells, its function is unknown. It has a monomer structure with a valency of... region: IgM, IgD, IgG, IgE, and IgA.    Figure 1: Diagram of an antibody labeled with Fc, Fab,...antigen of interest. Isotype controls are used to make sure the staining you see is due to target-specific antibody...region length. Now for some essential isotype nomenclature. Antibody heavy chain proteins as well as the...cells begin by expressing IgM. IgM has a pentamer structure, which means each IgM molecule has a binding capacity... for IgM, IgD, and IgG are deleted.     Figure 2: Isotype switching requires DNA recombination...

... base-pair editing CRISPR reporters in the near future.  SRIRACCHA (stable, but reversible, integrated...reporter into the genome of mammalian cells.  Figure 1: The SRIRACCHA reporter construct. Image from... for assessing CRISPR/Cas9 activity Guide RNA structure and the site in the genome you are trying to target...Thus it is essential to identify the best sgRNA to ensure success in your CRISPR experiments. But how? There... fluorescence and in-frame fluorescence.  Figure 2: The GEmCherry reporter. Image from Højland Knudsen...FACs sorting, confirming yet again that sgRNA structure and genomic recognition sites play a large role... for editing, regulating and targeting genomes. Nature Biotechnology 32:347–355 . https://doi.org/10.1038...

...synthetic) pFZ19 (yellow flame) Temperature inducible promoters Temperature sensitive expression systems ... expression at regular temperatures but can be induced by heat or cold exposure. Examples include the ...Types of inducible promoters Chemical agents, temperature, and light are all examples of factors that can...which a gene of choice is only expressed following exposure to a brief heat shock. In the case of Hsp70, the...since expression can be repressed by glucose. Temperature inducible promoters are also known for their ...

...PACE) method requires constant turbidity of the culture, so bacteria must be grown in a turbidostat. ...activity degrades the displaced strand.   Figure 1: EvolvR consists of an error-prone polymerase...by 120-fold over background. Due to its modular nature, the Dueber Lab created a few versions of EvolvR... more than one genomic site for mutagenesis, a feature which they used to generate bacteria resistant ...at a user-defined loci in bacteria. Its modular nature provides versatility in defining the mutational...diversification of all nucleotides in a tunable window." Nature 560.7717 (2018): 248. PubMed PMID: 30069054. Sadanand..., Saheli. "EvolvR-ing to targeted mutagenesis." Nature biotechnology 36.9 (2018): 819. Additional resources...

...University of Manitoba. Location, Location, Location! Failure to Plan (for Storage) Is Planning to Fail Patience...Patience Is Bitter but Its Fruit Is Sweet The Future? I knew little about adeno-associated Viral Vectors...sufficient to overcome the transport issues. 2. Failure to plan (for storage) Is planning to fail Freeze...not take much time at all. Much of the previous literature using AAVs for DREADD delivery indicates ~7-21...to use AAV constructs with self-complementing structure (scAAV) (7). As single stranded DNA viruses, AAVs...from ~4.8 kB [8] to ~2.3 kB [9]).     4. The Future What new types of research may be enabled by the...experiments, a group of researchers has identified this feature of AAVs as a new tool for neuroanatomical tracing...

...sandwiched between 2 loxp sites and is excised by Cre (Figure 1). This results in one loxp site and one lox2272...Since loxp and lox2272 can not recombine, this ensures that the transgene is no longer able to flip back...the cause of this spurious expression?   Figure 1.  Cre-recombinase binds to either pair of lox...orientation preventing the transgene from reverting. Figure created with BioRender.com   Causes of recombination...to flank the transgenes (non-homologous pairs) (Figure 2.). They found that almost all off-target expression... to exercise caution when using them.    Figure 2. Schematic diagram showing the mechanism of spontaneous...reduced reversion and less off-target expression. Figure created with BioRender.com   Strategies for...

...Glutamate sensing reporters Abhi Aggarwal is a postbaccalaureate research technician in Kaspar Podgorski’s ...expression and trafficking of these biosensors.   Figure 1: Schematic of iGluSnFR3 (left). GluSnFR3 in pMinDisplay... domain), in electroporated in rat hippocampal cultured neurons, imaged 14 days post-transfection, excited...happen inside the cell,” says Pedre Pérez. Figure 2: Micrographs of the biosensor expressed in the...from opioid use disorder,” says Hubbard. Figure 3: 20x confocal image of the periaqueductal gray...response to light touch in mechanical allodynia. Figure 4: While Qiu’s work on the PV neurons is in progress...calcium, and membrane voltage,” says Tian. Figure 5: Citrine-tagged voltage indicator expressed in...

... a native peptide bond at the split site. Figure 1: The base editor is split into two plasmids and...the split base editors at Addgene. Levy et al., Nature Biomedical Engineering, 2020. PubMed PMID: 31937940...in higher quenching of mScarlet emission. Figure 2: Ace-mScarlet is a fusion between the voltage-sensitive...synthetic biology tools for cyanobacteria. Figure 3: Assembly of plasmids using the Cyanogate Kit...reducing Cre toxicity in long-term experiments.  Figure 4: The C-terminus of Cre (CreC) and the N-terminus...(PCB), is required for PhyBΔ to be functional. Exposure to red light induces PhyBΔ and PIF6APB binding...This novel tool is practical in cell and organ culture, as well as cell lineage studies. Eisenhoffer and...