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TypeBlog PostPublishedNov. 30, 2021, 2:15 p.m....variety of transferable skills. At Addgene, we've set out to fill this gap by both highlighting that researchers...being able to recognize it as a part of your skill set later on. If you are new to research and the lab,... define this skillset. After sifting through dozens of career advice articles, I settled on defining problem...qualified to be an astronaut. But, knowing that this skillset is a part of your toolkit is important. Paired...
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Transferable Skills Guide: Public Speaking
TypeBlog PostPublishedApril 20, 2023, 4 p.m....simply pause and take a deep breath before the panic sets in. Most of the time, that’s enough–but if it’s ... lab meetings, you’ve developed a valuable skill set that will be useful in nearly any other job you may... -
Plasmids 101: Modular Cloning
TypeBlog PostPublishedMarch 12, 2024, 1:15 p.m....or circuits with functional relevance following a set hierarchy. MoClo originally developed from Golden...unpredictable cases, MoClo provides two answers: first, sets of parts with characterized behaviors are available... -
Developing Lab Management Software for Biology
TypeBlog PostPublishedAug. 25, 2016, 2:30 p.m....Whenever an order is placed on the Addgene website, it sets off a chain reaction of events throughout all of...dealing with the samples to newer lab members. We can set ourselves up for success by giving explicit instructions...one of these steps can fail but, in our current setup, there are no explicit instructions on what to do...but critical logic. Some steps fail “hard”, they reset the whole procedure. Other steps fail “soft” they... and capital cost of getting up to speed with a setup is almost always worth it. Because labels are applied... -
Custom CRISPR Screens & the Green Listed Software
TypeBlog PostPublishedJuly 11, 2017, 2:30 p.m....CRISPR knockout screens have been used in several settings, and are fantastic tools for unbiased discovery...library before using them to understand how they are set up. Using the “User Upload” alternative, you furthermore...convenient for you to later identify how you were setting up the experiment. Output_NotFoundList: A text...approach is to use smaller libraries targeting subsets of genes. With such an approach, you lose the unbiased...differentially expressed genes found in a gene expression dataset are causal for a phenotype of interest. Selected... -
A Practical Guide to Optimizing AAV DIO and FLEx Vector Expression
TypeBlog PostPublishedNov. 2, 2021, 1:15 p.m....paper from Ed Callaway’s lab (Fischer, KB. 2019) set-out to systematically test the potential causes of...expression in vivo. Since DIO/FLEx vectors contain two sets of homologous recombination sites, they hypothesized...should now be able to make smaller adjustments to a set of injections into your animal model. For example...of AAV vector we produce containing a DIO/FLEx cassette using next-generation sequencing (NGS) (Guerin... -
Sequencing Options for CRISPR Genotyping
TypeBlog PostPublishedOct. 4, 2016, 2:30 p.m....may generate irreproducible data in a research setting, but these events could have disastrous health ...criteria are not exhaustive. Mismatch tolerance settings are often limited to off-target sites of <4 bp...clinical approval. It is key to maintain a consistent set of standards as the field seeks to generate reproducible...streptavidin and next-generation sequencing (BLESS) (Crosetto et al. 2013). GUIDE-seq and BLESS detect double-stranded...25503383. PubMed Central PMCID: PMC4320661. 14. Crosetto, Nicola, et al. "Nucleotide-resolution DNA double-strand... -
Finding Your Perfect Job After University
TypeBlog PostPublishedJan. 12, 2016, 3:30 p.m....summer role was incredibly valuable because it was a set duration of only three months and made a good job... in a developing tropical country. This is why I set up a placement working in a rural health clinic in... can be a glut of individuals with similar skill sets. This is not to say that all commercial companies... -
Plasmids 101: 5 factors to help you choose the right cloning method
TypeBlog PostPublishedAug. 21, 2018, 12:31 p.m....polymerase, and a DNA ligase to carry out a pooled set of ligations in an hour or less. The ligations combine...allows one to simultaneously complete an ordered set of scarless ligations following digestion with Type... -
Pathways Over Time Plasmids Engage Students in Functional Genomics Research
TypeBlog PostPublishedMay 22, 2018, 1:38 p.m....well-studied and inexpensive. In addition, a complete set of well-annotated deletion strains is available (...content knowledge and research skills (8). A complete set of student and instructor resources is available ... -
Early Career Researcher Toolbox: Finding Relevant Papers
TypeBlog PostPublishedJan. 9, 2020, 1:45 p.m....published papers that contain that term. You can also set up alerts for new publications from a particular ...similar to Facebook or Instagram. Key features Setting up a personalized feed is simple. You can enter... -
Making CRISPR Plasmids Using Fragmid
TypeBlog PostPublishedAug. 29, 2024, 1:15 p.m....options depending on above selections) Module set (the set of components you want in your vectors) Target... to switch out reporters, Cas proteins, guide cassettes, promoters, N’ and/or C’ terminus, and selection...destination vectors contain an ampicillin resistance cassette and an origin of replication, which are not schematized... -
Adapting Toehold Switches to Detect Zika Virus
TypeBlog PostPublishedAug. 30, 2016, 2:30 p.m....follow-up DNA oligos to arrive. We also were careful to set up clear tasks for each member of the team to accomplish... can detect the virus in a clinically relevant setting. Molecular diagnostics for the Zika virus predominantly... the work done as quickly as we could. From the outset, we spread out the risk for the project by initially... -
Tips for Using BLAST to Verify Plasmids
TypeBlog PostPublishedMay 29, 2014, 1:29 p.m.... as the overall alignment results. The default setting is “Optimize for Highly similar sequences (megablast... it saves analysis time to remove this default setting. Timesaving Tip #2: blastx searches are inherently... -
15 Hot Plasmids from 2017
TypeBlog PostPublishedJan. 9, 2018, 3:02 p.m....structural plasticity in single dendritic spines. The set of CyRFP constructs available at Addgene includes...illustrates the utility of PhoCl in a variety of settings. For instance, inserting PhoCl in between a protein...molecular weight markers The Tan lab at Penn State - set out to “rule” Molecular Biology. Under the supervision... of Minnesota recently deposited a comprehensive set of plasmids that can be used for either TALEN or ...kanamycin cassettes and were carefully designed to allow for easy removal of the resistance cassette via Cre...Every quarter we highlight a subset of the new plasmids in the repository through our hot plasmids articles...the transcription factors from a polycistronic cassette. However, it was unknown whether variations in... -
Addgene Protocols Go Viral: AAV Purification and Titration
TypeBlog PostPublishedJune 13, 2019, 12:19 p.m....technology Here’s some advice on how to successfully set up your qPCR to determine the genome copies in a ... -
How to Deposit Your Plasmids with Addgene
TypeBlog PostPublishedFeb. 27, 2024, 2:15 p.m....or "Unpublished or pre-publication plasmids" and set a desired distribution status. You can submit "Published... below: Pooled Library A pooled library is a set of plasmids all built with the same backbone and ...entered will be saved and the page will open a new set of entry fields to describe the next insert. Repeat... -
A New Generation of Adenine Base Editors Improves Editing in Primary Human Cells
TypeBlog PostPublishedMay 7, 2020, 1:15 p.m....of wild-type TadA and TadA7.10, they designed one set of ABE8’s similarly (ABE8.x-d). In order to assess...from the complex the researchers developed a second set: The ABE8.x-d version carries a fusion of wild-type... -
Truncated gRNAs for Regulating Gene Expression
TypeBlog PostPublishedJan. 10, 2017, 3:37 p.m....one set of genetic loci can be introduced together with truncated gRNAs targeting a different set of loci... -
Transferable Skills: Negotiation
TypeBlog PostPublishedMarch 3, 2022, 2 p.m....variety of transferable skills. At Addgene, we've set out to fill this gap by highlighting that researchers...professional negotiation look like? In professional settings, creative negotiation skills are key to maintaining...get what I want, that means you don’t. In this mindset, one of us wins, the other loses. Although this...