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pAAV-FLEX-tdTomato Citations (49)

Originally described in: Accessory plasmids for optogenetics
Unpublished

Articles Citing pAAV-FLEX-tdTomato

Articles
Central role for PICALM in amyloid-beta blood-brain barrier transcytosis and clearance. Zhao Z, Sagare AP, Ma Q, Halliday MR, Kong P, Kisler K, Winkler EA, Ramanathan A, Kanekiyo T, Bu G, Owens NC, Rege SV, Si G, Ahuja A, Zhu D, Miller CA, Schneider JA, Maeda M, Maeda T, Sugawara T, Ichida JK, Zlokovic BV. Nat Neurosci. 2015 Jul;18(7):978-87. doi: 10.1038/nn.4025. Epub 2015 May 25. PubMed
Cell type-specific manipulation with GFP-dependent Cre recombinase. Tang JC, Rudolph S, Dhande OS, Abraira VE, Choi S, Lapan SW, Drew IR, Drokhlyansky E, Huberman AD, Regehr WG, Cepko CL. Nat Neurosci. 2015 Sep;18(9):1334-41. doi: 10.1038/nn.4081. Epub 2015 Aug 10. PubMed

Associated Plasmids
A Neural Circuit for Auditory Dominance over Visual Perception. Song YH, Kim JH, Jeong HW, Choi I, Jeong D, Kim K, Lee SH. Neuron. 2017 Feb 22;93(4):940-954.e6. doi: 10.1016/j.neuron.2017.01.006. Epub 2017 Feb 2. PubMed
Induction of functional dopamine neurons from human astrocytes in vitro and mouse astrocytes in a Parkinson's disease model. Rivetti di Val Cervo P, Romanov RA, Spigolon G, Masini D, Martin-Montanez E, Toledo EM, La Manno G, Feyder M, Pifl C, Ng YH, Sanchez SP, Linnarsson S, Wernig M, Harkany T, Fisone G, Arenas E. Nat Biotechnol. 2017 May;35(5):444-452. doi: 10.1038/nbt.3835. Epub 2017 Apr 10. PubMed
Spinal nociceptive circuit analysis with recombinant adeno-associated viruses: the impact of serotypes and promoters. Haenraets K, Foster E, Johannssen H, Kandra V, Frezel N, Steffen T, Jaramillo V, Paterna JC, Zeilhofer HU, Wildner H. J Neurochem. 2017 Sep;142(5):721-733. doi: 10.1111/jnc.14124. Epub 2017 Aug 4. PubMed
Viral Delivery of GFP-Dependent Recombinases to the Mouse Brain. Tang JCY, Rudolph S, Cepko CL. Methods Mol Biol. 2017;1642:109-126. doi: 10.1007/978-1-4939-7169-5_8. PubMed
Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging. Piatkevich KD, Suk HJ, Kodandaramaiah SB, Yoshida F, DeGennaro EM, Drobizhev M, Hughes TE, Desimone R, Boyden ES, Verkhusha VV. Biophys J. 2017 Oct 7. pii: S0006-3495(17)31018-4. doi: 10.1016/j.bpj.2017.09.007. PubMed
Anterolateral Motor Cortex Connects with a Medial Subdivision of Ventromedial Thalamus through Cell Type-Specific Circuits, Forming an Excitatory Thalamo-Cortico-Thalamic Loop via Layer 1 Apical Tuft Dendrites of Layer 5B Pyramidal Tract Type Neurons. Guo K, Yamawaki N, Svoboda K, Shepherd GMG. J Neurosci. 2018 Oct 10;38(41):8787-8797. doi: 10.1523/JNEUROSCI.1333-18.2018. Epub 2018 Aug 24. PubMed
In vivo proximity proteomics of nascent synapses reveals a novel regulator of cytoskeleton-mediated synaptic maturation. Spence EF, Dube S, Uezu A, Locke M, Soderblom EJ, Soderling SH. Nat Commun. 2019 Jan 23;10(1):386. doi: 10.1038/s41467-019-08288-w. PubMed
Cortical and thalamic inputs exert cell type-specific feedforward inhibition on striatal GABAergic interneurons. Assous M, Tepper JM. J Neurosci Res. 2019 May 17. doi: 10.1002/jnr.24444. PubMed
Amygdala GABA Neurons Project To vlPAG And mPFC. Sun Y, Blanco-Centurion C, Zou B, Bendell E, Shiromani PJ, Liu M. IBRO Rep. 2019 Mar 8;6:132-136. doi: 10.1016/j.ibror.2019.03.001. eCollection 2019 Jun. PubMed
Neuronal network activity controls microglial process surveillance in awake mice via norepinephrine signaling. Liu YU, Ying Y, Li Y, Eyo UB, Chen T, Zheng J, Umpierre AD, Zhu J, Bosco DB, Dong H, Wu LJ. Nat Neurosci. 2019 Nov;22(11):1771-1781. doi: 10.1038/s41593-019-0511-3. Epub 2019 Oct 21. PubMed
NTS Catecholamine Neurons Mediate Hypoglycemic Hunger via Medial Hypothalamic Feeding Pathways. Aklan I, Sayar Atasoy N, Yavuz Y, Ates T, Coban I, Koksalar F, Filiz G, Topcu IC, Oncul M, Dilsiz P, Cebecioglu U, Alp MI, Yilmaz B, Davis DR, Hajdukiewicz K, Saito K, Konopka W, Cui H, Atasoy D. Cell Metab. 2020 Feb 4;31(2):313-326.e5. doi: 10.1016/j.cmet.2019.11.016. Epub 2019 Dec 12. PubMed
Pathway-, layer- and cell-type-specific thalamic input to mouse barrel cortex. Sermet BS, Truschow P, Feyerabend M, Mayrhofer JM, Oram TB, Yizhar O, Staiger JF, Petersen CC. Elife. 2019 Dec 20;8. pii: 52665. doi: 10.7554/eLife.52665. PubMed
Dynamic Changes in the Bridging Collaterals of the Basal Ganglia Circuitry Control Stress-Related Behaviors in Mice. Lee Y, Han NE, Kim W, Kim JG, Lee IB, Choi SJ, Chun H, Seo M, Lee CJ, Koh HY, Kim JH, Baik JH, Bear MF, Choi SY, Yoon BJ. Mol Cells. 2020 Apr 30;43(4):360-372. doi: 10.14348/molcells.2019.0279. PubMed
Optogenetic Activation of beta-Endorphin Terminals in the Medial Preoptic Nucleus Regulates Female Sexual Receptivity. Johnson C, Hong W, Micevych P. eNeuro. 2020 Jan 24;7(1). pii: ENEURO.0315-19.2019. doi: 10.1523/ENEURO.0315-19.2019. Print 2020 Jan/Feb. PubMed
Structural dynamics and stability of corticocortical and thalamocortical axon terminals during motor learning. Hasegawa R, Ebina T, Tanaka YR, Kobayashi K, Matsuzaki M. PLoS One. 2020 Jun 19;15(6):e0234930. doi: 10.1371/journal.pone.0234930. eCollection 2020. PubMed
CREditing: a tool for gene tuning in Trypanosoma cruzi. Pacheco-Lugo LA, Saenz-Garcia JL, Diaz-Olmos Y, Netto-Costa R, Brant RSC, DaRocha WD. Int J Parasitol. 2020 Nov;50(13):1067-1077. doi: 10.1016/j.ijpara.2020.06.010. Epub 2020 Aug 25. PubMed
Neuronal metabolic rewiring promotes resilience to neurodegeneration caused by mitochondrial dysfunction. Motori E, Atanassov I, Kochan SMV, Folz-Donahue K, Sakthivelu V, Giavalisco P, Toni N, Puyal J, Larsson NG. Sci Adv. 2020 Aug 28;6(35):eaba8271. doi: 10.1126/sciadv.aba8271. eCollection 2020 Aug. PubMed
A spinoparabrachial circuit defined by Tacr1 expression drives pain. Barik A, Sathyamurthy A, Thompson J, Seltzer M, Levine A, Chesler A. Elife. 2021 Feb 16;10. pii: 61135. doi: 10.7554/eLife.61135. PubMed
DEVILS: a tool for the visualization of large datasets with a high dynamic range. Guiet R, Burri O, Chiaruttini N, Hagens O, Seitz A. F1000Res. 2020 Nov 27;9:1380. doi: 10.12688/f1000research.25447.2. eCollection 2020. PubMed
Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Blot A, Roth MM, Gasler I, Javadzadeh M, Imhof F, Hofer SB. Neuron. 2021 Jun 16;109(12):1996-2008.e6. doi: 10.1016/j.neuron.2021.04.017. Epub 2021 May 11. PubMed
Dopamine differentially modulates the size of projection neuron ensembles in the intact and dopamine-depleted striatum. Maltese M, March JR, Bashaw AG, Tritsch NX. Elife. 2021 May 13;10. pii: 68041. doi: 10.7554/eLife.68041. PubMed
The amygdala modulates prepulse inhibition of the auditory startle reflex through excitatory inputs to the caudal pontine reticular nucleus. Cano JC, Huang W, Fenelon K. BMC Biol. 2021 Jun 3;19(1):116. doi: 10.1186/s12915-021-01050-z. PubMed
Divergent projections of the paraventricular nucleus of the thalamus mediate the selection of passive and active defensive behaviors. Ma J, du Hoffmann J, Kindel M, Beas BS, Chudasama Y, Penzo MA. Nat Neurosci. 2021 Oct;24(10):1429-1440. doi: 10.1038/s41593-021-00912-7. Epub 2021 Aug 19. PubMed
In vitro ictogenesis is stochastic at the single neuron level. Lau LA, Staley KJ, Lillis KP. Brain. 2022 Apr 18;145(2):531-541. doi: 10.1093/brain/awab312. PubMed
Posterodorsal Medial Amygdala Regulation of Female Social Behavior: GABA versus Glutamate Projections. Johnson CS, Hong W, Micevych PE. J Neurosci. 2021 Oct 20;41(42):8790-8800. doi: 10.1523/JNEUROSCI.1103-21.2021. Epub 2021 Sep 1. PubMed
Diverse inhibitory projections from the cerebellar interposed nucleus. Judd EN, Lewis SM, Person AL. Elife. 2021 Sep 20;10. pii: 66231. doi: 10.7554/eLife.66231. PubMed
The entorhinal cortex modulates trace fear memory formation and neuroplasticity in the mouse lateral amygdala via cholecystokinin. Feng H, Su J, Fang W, Chen X, He J. Elife. 2021 Nov 15;10. pii: 69333. doi: 10.7554/eLife.69333. PubMed
Efficiency of cell-type specific and generic promoters in transducing oxytocin neurons and monitoring their neural activity during lactation. Thirtamara Rajamani K, Leithead AB, Kim M, Barbier M, Peruggia M, Niblo K, Barteczko L, Lefevre A, Grinevich V, Harony-Nicolas H. Sci Rep. 2021 Nov 18;11(1):22541. doi: 10.1038/s41598-021-01818-x. PubMed
Inhibitory control of synaptic signals preceding locomotion in mouse frontal cortex. Zhang CL, Koukouli F, Allegra M, Ortiz C, Kao HL, Maskos U, Changeux JP, Schmidt-Hieber C. Cell Rep. 2021 Nov 23;37(8):110035. doi: 10.1016/j.celrep.2021.110035. PubMed
Cholinergic feedback to bipolar cells contributes to motion detection in the mouse retina. Hellmer CB, Hall LM, Bohl JM, Sharpe ZJ, Smith RG, Ichinose T. Cell Rep. 2021 Dec 14;37(11):110106. doi: 10.1016/j.celrep.2021.110106. PubMed
Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration. Cheung V, Chung P, Bjorni M, Shvareva VA, Lopez YC, Feinberg EH. Cell Rep. 2021 Dec 21;37(12):110131. doi: 10.1016/j.celrep.2021.110131. PubMed
Application of AAV1 for Anterograde Transsynaptic Circuit Mapping and Input-Dependent Neuronal Cataloging. Zingg B, Dong HW, Tao HW, Zhang LI. Curr Protoc. 2022 Jan;2(1):e339. doi: 10.1002/cpz1.339. PubMed
FGF21 suppresses alcohol consumption through an amygdalo-striatal circuit. Flippo KH, Trammell SAJ, Gillum MP, Aklan I, Perez MB, Yavuz Y, Smith NK, Jensen-Cody SO, Zhou B, Claflin KE, Beierschmitt A, Fink-Jensen A, Knop FK, Palmour RM, Grueter BA, Atasoy D, Potthoff MJ. Cell Metab. 2022 Feb 1;34(2):317-328.e6. doi: 10.1016/j.cmet.2021.12.024. PubMed
Rapid odor processing by layer 2 subcircuits in lateral entorhinal cortex. Bitzenhofer SH, Westeinde EA, Zhang HB, Isaacson JS. Elife. 2022 Feb 7;11:e75065. doi: 10.7554/eLife.75065. PubMed
Midbrain projection to the basolateral amygdala encodes anxiety-like but not depression-like behaviors. Morel C, Montgomery SE, Li L, Durand-de Cuttoli R, Teichman EM, Juarez B, Tzavaras N, Ku SM, Flanigan ME, Cai M, Walsh JJ, Russo SJ, Nestler EJ, Calipari ES, Friedman AK, Han MH. Nat Commun. 2022 Mar 22;13(1):1532. doi: 10.1038/s41467-022-29155-1. PubMed
Mapping of the Sensory Innervation of the Mouse Lung by Specific Vagal and Dorsal Root Ganglion Neuronal Subsets. Kim SH, Patil MJ, Hadley SH, Bahia PK, Butler SG, Madaram M, Taylor-Clark TE. eNeuro. 2022 Apr 13;9(2). pii: ENEURO.0026-22.2022. doi: 10.1523/ENEURO.0026-22.2022. Print 2022 Mar-Apr. PubMed
The rapid developmental rise of somatic inhibition disengages hippocampal dynamics from self-motion. Dard RF, Leprince E, Denis J, Rao Balappa S, Suchkov D, Boyce R, Lopez C, Giorgi-Kurz M, Szwagier T, Dumont T, Rouault H, Minlebaev M, Baude A, Cossart R, Picardo MA. Elife. 2022 Jul 20;11:e78116. doi: 10.7554/eLife.78116. PubMed
The Neurotrophic Receptor Tyrosine Kinase in MEC-mPFC Neurons Contributes to Remote Memory Consolidation. Hong J, Jeong Y, Heo WD. J Neurosci. 2022 Jul 20;42(34):6605-19. doi: 10.1523/JNEUROSCI.2433-21.2022. PubMed
Pharmacological FGF21 signals to glutamatergic neurons to enhance leptin action and lower body weight during obesity. Claflin KE, Sullivan AI, Naber MC, Flippo KH, Morgan DA, Neff TJ, Jensen-Cody SO, Zhu Z, Zingman LV, Rahmouni K, Potthoff MJ. Mol Metab. 2022 Oct;64:101564. doi: 10.1016/j.molmet.2022.101564. Epub 2022 Aug 6. PubMed
Distinct and sex-specific expression of mu opioid receptors in anterior cingulate and somatosensory S1 cortical areas. Zamfir M, Sharif B, Locke S, Ehrlich AT, Ochandarena NE, Scherrer G, Ribeiro-da-Silva A, Kieffer BL, Seguela P. Pain. 2023 Apr 1;164(4):703-716. doi: 10.1097/j.pain.0000000000002751. Epub 2022 Aug 16. PubMed
Central FGF21 production regulates memory but not peripheral metabolism. Zhou B, Claflin KE, Flippo KH, Sullivan AI, Asghari A, Tadinada SM, Jensen-Cody SO, Abel T, Potthoff MJ. Cell Rep. 2022 Aug 23;40(8):111239. doi: 10.1016/j.celrep.2022.111239. PubMed
A serotonergic axon-cilium synapse drives nuclear signaling to alter chromatin accessibility. Sheu SH, Upadhyayula S, Dupuy V, Pang S, Deng F, Wan J, Walpita D, Pasolli HA, Houser J, Sanchez-Martinez S, Brauchi SE, Banala S, Freeman M, Xu CS, Kirchhausen T, Hess HF, Lavis L, Li Y, Chaumont-Dubel S, Clapham DE. Cell. 2022 Sep 1;185(18):3390-3407.e18. doi: 10.1016/j.cell.2022.07.026. PubMed

Associated Plasmids
Nigrostriatal dopamine pathway regulates auditory discrimination behavior. Chen APF, Malgady JM, Chen L, Shi KW, Cheng E, Plotkin JL, Ge S, Xiong Q. Nat Commun. 2022 Oct 8;13(1):5942. doi: 10.1038/s41467-022-33747-2. PubMed
Reward expectation extinction restructures and degrades CA1 spatial maps through loss of a dopaminergic reward proximity signal. Krishnan S, Heer C, Cherian C, Sheffield MEJ. Nat Commun. 2022 Nov 4;13(1):6662. doi: 10.1038/s41467-022-34465-5. PubMed
Raphe serotonin projections dynamically regulate feeding behavior through targeting inhibitory circuits from rostral zona incerta to paraventricular thalamus. Ye Q, Nunez J, Zhang X. Mol Metab. 2022 Dec;66:101634. doi: 10.1016/j.molmet.2022.101634. Epub 2022 Nov 10. PubMed
Pharmacological Signature and Target Specificity of Inhibitory Circuits Formed by Martinotti Cells in the Mouse Barrel Cortex. Donato C, Balduino Victorino D, Cabezas C, Aguirre A, Lourenco J, Potier MC, Zorrilla de San Martin J, Bacci A. J Neurosci. 2023 Jan 4;43(1):14-27. doi: 10.1523/JNEUROSCI.1661-21.2022. Epub 2022 Nov 16. PubMed
A sex difference in mouse dopaminergic projections from the midbrain to basolateral amygdala. Manion MTC, Glasper ER, Wang KH. Biol Sex Differ. 2022 Dec 30;13(1):75. doi: 10.1186/s13293-022-00486-4. PubMed

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