pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato] Citations (59)
Originally described in: Independent optical excitation of distinct neural populations.Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, Surek B, Melkonian M, Jayaraman V, Constantine-Paton M, Wong GK, Boyden ES Nat Methods. 2014 Mar;11(3):338-46. doi: 10.1038/nmeth.2836. Epub 2014 Feb 9. PubMed Journal
Articles Citing pAAV-Syn-FLEX-rc[ChrimsonR-tdTomato]
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| GABAB Receptors Tune Cortical Feedback to the Olfactory Bulb. Mazo C, Lepousez G, Nissant A, Valley MT, Lledo PM. J Neurosci. 2016 Aug 10;36(32):8289-304. doi: 10.1523/JNEUROSCI.3823-15.2016. PubMed |
Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons.
Chatterjee S, Sullivan HA, MacLennan BJ, Xu R, Hou Y, Lavin TK, Lea NE, Michalski JE, Babcock KR, Dietrich S, Matthews GA, Beyeler A, Calhoon GG, Glober G, Whitesell JD, Yao S, Cetin A, Harris JA, Zeng H, Tye KM, Reid RC, Wickersham IR.
Nat Neurosci. 2018 Apr;21(4):638-646. doi: 10.1038/s41593-018-0091-7. Epub 2018 Mar 5.
PubMed
Associated Plasmids |
| Two genetically, anatomically and functionally distinct cell types segregate across anteroposterior axis of paraventricular thalamus. Gao C, Leng Y, Ma J, Rooke V, Rodriguez-Gonzalez S, Ramakrishnan C, Deisseroth K, Penzo MA. Nat Neurosci. 2020 Feb;23(2):217-228. doi: 10.1038/s41593-019-0572-3. Epub 2020 Jan 13. PubMed |
| Stimulus-specific hypothalamic encoding of a persistent defensive state. Kennedy A, Kunwar PS, Li LY, Stagkourakis S, Wagenaar DA, Anderson DJ. Nature. 2020 Oct;586(7831):730-734. doi: 10.1038/s41586-020-2728-4. Epub 2020 Sep 16. PubMed |
| Relocation of an Extrasynaptic GABAA Receptor to Inhibitory Synapses Freezes Excitatory Synaptic Strength and Preserves Memory. Davenport CM, Rajappa R, Katchan L, Taylor CR, Tsai MC, Smith CM, de Jong JW, Arnold DB, Lammel S, Kramer RH. Neuron. 2021 Jan 6;109(1):123-134.e4. doi: 10.1016/j.neuron.2020.09.037. Epub 2020 Oct 22. PubMed |
| A ventrolateral medulla-midline thalamic circuit for hypoglycemic feeding. Sofia Beas B, Gu X, Leng Y, Koita O, Rodriguez-Gonzalez S, Kindel M, Matikainen-Ankney BA, Larsen RS, Kravitz AV, Hoon MA, Penzo MA. Nat Commun. 2020 Dec 4;11(1):6218. doi: 10.1038/s41467-020-19980-7. PubMed |
| Cell-type-specific asynchronous modulation of PKA by dopamine in learning. Lee SJ, Lodder B, Chen Y, Patriarchi T, Tian L, Sabatini BL. Nature. 2021 Feb;590(7846):451-456. doi: 10.1038/s41586-020-03050-5. Epub 2020 Dec 23. PubMed |
| Chemical sectioning fluorescence tomography: high-throughput, high-contrast, multicolor, whole-brain imaging at subcellular resolution. Wang X, Xiong H, Liu Y, Yang T, Li A, Huang F, Yin F, Su L, Liu L, Li N, Li L, Cheng S, Liu X, Lv X, Liu X, Chu J, Xu T, Xu F, Gong H, Luo Q, Yuan J, Zeng S. Cell Rep. 2021 Feb 2;34(5):108709. doi: 10.1016/j.celrep.2021.108709. PubMed |
| Wave-like dopamine dynamics as a mechanism for spatiotemporal credit assignment. Hamid AA, Frank MJ, Moore CI. Cell. 2021 May 13;184(10):2733-2749.e16. doi: 10.1016/j.cell.2021.03.046. Epub 2021 Apr 15. PubMed |
| Visual intracortical and transthalamic pathways carry distinct information to cortical areas. Blot A, Roth MM, Gasler I, Javadzadeh M, Imhof F, Hofer SB. Neuron. 2021 Jun 16;109(12):1996-2008.e6. doi: 10.1016/j.neuron.2021.04.017. Epub 2021 May 11. PubMed |
| Divergent projections of the paraventricular nucleus of the thalamus mediate the selection of passive and active defensive behaviors. Ma J, du Hoffmann J, Kindel M, Beas BS, Chudasama Y, Penzo MA. Nat Neurosci. 2021 Oct;24(10):1429-1440. doi: 10.1038/s41593-021-00912-7. Epub 2021 Aug 19. PubMed |
| Wireless closed-loop optogenetics across the entire dorsoventral spinal cord in mice. Kathe C, Michoud F, Schonle P, Rowald A, Brun N, Ravier J, Furfaro I, Paggi V, Kim K, Soloukey S, Asboth L, Hutson TH, Jelescu I, Philippides A, Alwahab N, Gandar J, Huber D, De Zeeuw CI, Barraud Q, Huang Q, Lacour SP, Courtine G. Nat Biotechnol. 2022 Feb;40(2):198-208. doi: 10.1038/s41587-021-01019-x. Epub 2021 Sep 27. PubMed |
| Serotonin receptors contribute to dopamine depression of lateral inhibition in the nucleus accumbens. Burke DA, Alvarez VA. Cell Rep. 2022 May 10;39(6):110795. doi: 10.1016/j.celrep.2022.110795. PubMed |
Natural locus coeruleus dynamics during feeding.
Sciolino NR, Hsiang M, Mazzone CM, Wilson LR, Plummer NW, Amin J, Smith KG, McGee CA, Fry SA, Yang CX, Powell JM, Bruchas MR, Kravitz AV, Cushman JD, Krashes MJ, Cui G, Jensen P.
Sci Adv. 2022 Aug 19;8(33):eabn9134. doi: 10.1126/sciadv.abn9134. Epub 2022 Aug 19.
PubMed
Associated Plasmids |
A serotonergic axon-cilium synapse drives nuclear signaling to alter chromatin accessibility.
Sheu SH, Upadhyayula S, Dupuy V, Pang S, Deng F, Wan J, Walpita D, Pasolli HA, Houser J, Sanchez-Martinez S, Brauchi SE, Banala S, Freeman M, Xu CS, Kirchhausen T, Hess HF, Lavis L, Li Y, Chaumont-Dubel S, Clapham DE.
Cell. 2022 Sep 1;185(18):3390-3407.e18. doi: 10.1016/j.cell.2022.07.026.
PubMed
Associated Plasmids |
| The neurons that restore walking after paralysis. Kathe C, Skinnider MA, Hutson TH, Regazzi N, Gautier M, Demesmaeker R, Komi S, Ceto S, James ND, Cho N, Baud L, Galan K, Matson KJE, Rowald A, Kim K, Wang R, Minassian K, Prior JO, Asboth L, Barraud Q, Lacour SP, Levine AJ, Wagner F, Bloch J, Squair JW, Courtine G. Nature. 2022 Nov;611(7936):540-547. doi: 10.1038/s41586-022-05385-7. Epub 2022 Nov 9. PubMed |
| Activity-dependent constraints on catecholamine signaling. Li L, Rana A, Li EM, Feng J, Li Y, Bruchas MR. bioRxiv. 2023 Mar 31:2023.03.30.534970. doi: 10.1101/2023.03.30.534970. Preprint. PubMed |
| Noradrenergic Input from Nucleus of the Solitary Tract Regulates Parabrachial Activity in Mice. Ji Y, Onwukwe C, Smith J, Laub H, Posa L, Keller A, Masri R, Cramer N. eNeuro. 2023 May 4;10(5):ENEURO.0412-22.2023. doi: 10.1523/ENEURO.0412-22.2023. Print 2023 May. PubMed |
| Interhemispheric cortical long-term potentiation in the auditory cortex requires heterosynaptic activation of entorhinal projection. Li X, He L, Hu X, Huang F, Wang X, Chen M, Yoon EG, Bello ST, Chen T, Chen X, Tang P, Chen C, Qu J, He J. iScience. 2023 Mar 31;26(4):106542. doi: 10.1016/j.isci.2023.106542. eCollection 2023 Apr 21. PubMed |
| Dynorphinergic Projections from the Central Amygdala to the Parabrachial Nucleus Regulate Itch. Funahashi H, Pavlenko D, Sakai K, Verpile R, Sanders KM, Akiyama T. J Neurosci. 2023 Jul 19;43(29):5340-5349. doi: 10.1523/JNEUROSCI.0726-23.2023. Epub 2023 Jun 30. PubMed |
| Dopamine release in the nucleus accumbens promotes REM sleep and cataplexy. Toth BA, Chang KS, Fechtali S, Burgess CR. iScience. 2023 Aug 11;26(9):107613. doi: 10.1016/j.isci.2023.107613. eCollection 2023 Sep 15. PubMed |
| Hippocampus shapes cortical sensory output and novelty coding through a direct feedback circuit. Butola T, Hernandez Frausto M, Blankvoort S, Flatset MS, Peng L, Elmaleh M, Hairston A, Hussain F, Clopath C, Kentros C, Basu J. Res Sq [Preprint]. 2023 Aug 23:rs.3.rs-3270016. doi: 10.21203/rs.3.rs-3270016/v1. PubMed |
| An excitatory projection from the basal forebrain to the ventral tegmental area that underlies anorexia-like phenotypes. Cai J, Jiang Y, Xu Y, Jiang Z, Young C, Li H, Ortiz-Guzman J, Zhuo Y, Li Y, Xu Y, Arenkiel BR, Tong Q. Neuron. 2024 Feb 7;112(3):458-472.e6. doi: 10.1016/j.neuron.2023.11.001. Epub 2023 Dec 5. PubMed |
| Optogenetic activation of the ventral tegmental area-hippocampal pathway facilitates rapid adaptation to changes in spatial goals. Tamatsu Y, Azechi H, Takahashi R, Sawatani F, Ide K, Fujiyama F, Takahashi S. iScience. 2023 Nov 23;26(12):108536. doi: 10.1016/j.isci.2023.108536. eCollection 2023 Dec 15. PubMed |
| D1 and D2 medium spiny neurons in the nucleus accumbens core have distinct and valence-independent roles in learning. Zachry JE, Kutlu MG, Yoon HJ, Leonard MZ, Chevee M, Patel DD, Gaidici A, Kondev V, Thibeault KC, Bethi R, Tat J, Melugin PR, Isiktas AU, Joffe ME, Cai DJ, Conn PJ, Grueter BA, Calipari ES. Neuron. 2024 Mar 6;112(5):835-849.e7. doi: 10.1016/j.neuron.2023.11.023. Epub 2023 Dec 21. PubMed |
| Two parabrachial Cck neurons involved in the feedback control of thirst or salt appetite. Matsuda T, Kobayashi K, Kobayashi K, Noda M. Cell Rep. 2024 Jan 23;43(1):113619. doi: 10.1016/j.celrep.2023.113619. Epub 2023 Dec 28. PubMed |
| Projection-Targeted Photopharmacology Reveals Distinct Anxiolytic Roles for Presynaptic mGluR2 in Prefrontal- and Insula-Amygdala Synapses. Munguba H, Gutzeit VA, Srivastava I, Kristt M, Singh A, Vijay A, Arefin A, Thukral S, Broichhagen J, Stujenske JM, Liston C, Levitz J. bioRxiv [Preprint]. 2024 Jan 16:2024.01.15.575699. doi: 10.1101/2024.01.15.575699. PubMed |
| Reward contingency gates selective cholinergic suppression of amygdala neurons. Kimchi EY, Burgos-Robles A, Matthews GA, Chakoma T, Patarino M, Weddington JC, Siciliano C, Yang W, Foutch S, Simons R, Fong MF, Jing M, Li Y, Polley DB, Tye KM. Elife. 2024 Feb 20;12:RP89093. doi: 10.7554/eLife.89093. PubMed |
| Dopamine control of social novelty preference is constrained by an interpeduncular-tegmentum circuit. Molas S, Freels TG, Zhao-Shea R, Lee T, Gimenez-Gomez P, Barbini M, Martin GE, Tapper AR. Nat Commun. 2024 Apr 3;15(1):2891. doi: 10.1038/s41467-024-47255-y. PubMed |
| Dopamine neurons drive spatiotemporally heterogeneous striatal dopamine signals during learning. Engel L, Wolff AR, Blake M, Collins VL, Sinha S, Saunders BT. bioRxiv [Preprint]. 2024 Mar 30:2023.07.01.547331. doi: 10.1101/2023.07.01.547331. PubMed |
| Prediction-error signals in anterior cingulate cortex drive task-switching. Cole N, Harvey M, Myers-Joseph D, Gilra A, Khan AG. Nat Commun. 2024 Aug 17;15(1):7088. doi: 10.1038/s41467-024-51368-9. PubMed |
| The direct and indirect pathways of the basal ganglia antagonistically influence cortical activity and perceptual decisions. van Beest EH, Abdelwahab MAO, Cazemier JL, Baltira C, Maes MC, Peri BD, Self MW, Willuhn I, Roelfsema PR. iScience. 2024 Aug 22;27(9):110753. doi: 10.1016/j.isci.2024.110753. eCollection 2024 Sep 20. PubMed |
| Activation of NPY2R-expressing amygdala neurons inhibits itch behavior in mice without lateralization. Pavlenko D, Todurga-Seven ZG, Sanders K, Markan A, Verpile R, Ishida H, Costo D, Akiyama T. Sci Rep. 2024 Sep 27;14(1):22125. doi: 10.1038/s41598-024-73483-9. PubMed |
| Dentate gyrus norepinephrine ramping facilitates aversive contextual processing. Zhang ET, Saglimbeni GS, Feng J, Li Y, Bruchas MR. Nat Commun. 2025 Jan 7;16(1):454. doi: 10.1038/s41467-025-55817-x. PubMed |
| Convergent state-control of endogenous opioid analgesia. Kimmey BA, Ejoh L, Shangloo L, Wojick JA, Chehimi SN, McCall NM, Oswell CS, Mahmood M, Yang L, Samineni VK, Ramakrishnan C, Deisseroth K, Crist RC, Reiner BC, Tian L, Corder G. bioRxiv [Preprint]. 2025 Jan 3:2025.01.03.631111. doi: 10.1101/2025.01.03.631111. PubMed |
| Hippocampus shapes entorhinal cortical output through a direct feedback circuit. Butola T, Hernandez-Frausto M, Blankvoort S, Flatset MS, Peng L, Hairston A, Johnson CD, Elmaleh M, Amilcar A, Hussain F, Clopath C, Kentros C, Basu J. Nat Neurosci. 2025 Apr;28(4):811-822. doi: 10.1038/s41593-025-01883-9. Epub 2025 Feb 18. PubMed |
| Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics. Lakunina A, Socha KZ, Ladd A, Bowen AJ, Chen S, Colonell J, Doshi A, Karsh B, Krumin M, Kulik P, Li A, Neutens P, O'Callaghan J, Olsen M, Putzeys J, Tilmans HA, Ye Z, Welkenhuysen M, Hausser M, Koch C, Ting JT, Dutta B, Harris TD, Steinmetz NA, Svoboda K, Siegle JH, Carandini M. bioRxiv [Preprint]. 2025 Feb 21:2025.02.04.636286. doi: 10.1101/2025.02.04.636286. PubMed |
| Binocular processing facilitates escape behavior through multiple pathways to the superior colliculus. Broersen R, Thompson G, Thomas F, Stuart GJ. Curr Biol. 2025 Mar 24;35(6):1242-1257.e9. doi: 10.1016/j.cub.2025.01.066. Epub 2025 Feb 20. PubMed |
| Coding principles and mechanisms of serotonergic transmission modes. Zhang Y, Zhang P, Shin M, Chang Y, Abbott SBG, Venton BJ, Zhu JJ. Mol Psychiatry. 2025 Feb 22. doi: 10.1038/s41380-025-02930-4. PubMed |
| Reward expectation and receipt differentially modulate the spiking of accumbens D1+ and D2+ neurons. Faust TW, Mohebi A, Berke JD. Curr Biol. 2025 Mar 24;35(6):1285-1297.e3. doi: 10.1016/j.cub.2025.02.007. Epub 2025 Feb 27. PubMed |
| Acetylcholine modulates prefrontal outcome coding during threat learning under uncertainty. Tu G, Wen P, Halawa A, Takehara-Nishiuchi K. Elife. 2025 Mar 5;13:RP102986. doi: 10.7554/eLife.102986. PubMed |
| Sequential transitions of male sexual behaviors driven by dual acetylcholine-dopamine dynamics. Miyasaka A, Kanda T, Nonaka N, Terakoshi Y, Cherasse Y, Ishikawa Y, Li Y, Takizawa H, Hirano A, Seita J, Yanagisawa M, Sakurai T, Sakurai K, Liu Q. Neuron. 2025 Apr 16;113(8):1240-1258.e10. doi: 10.1016/j.neuron.2025.01.032. Epub 2025 Mar 19. PubMed |
| Foundry-fabricated dual-color nanophotonic neural probes for photostimulation and electrophysiological recording. Roszko DA, Chen FD, Straguzzi J, Wahn H, Xu A, McLaughlin B, Yin X, Chua H, Luo X, Lo GQ, Siegle JH, Poon JKS, Sacher WD. Neurophotonics. 2025 Apr;12(2):025002. doi: 10.1117/1.NPh.12.2.025002. Epub 2025 Mar 28. PubMed |
| GABAergic Projections from the Pretectum Boost Retinogeniculate Signal Transfer via Disinhibition. Whitley JB, Masterson SP, Gordon T III, Whyland KL, Campbell PW, Zhou N, Govindaiah G, Guido W, Bickford ME. J Neurosci. 2025 May 28;45(22):e2325242025. doi: 10.1523/JNEUROSCI.2325-24.2025. PubMed |
| Longitudinal calcium imaging of BNST neurons in mice during optogenetic manipulation of paraventricular thalamus axon terminals. Mindaye SA, Chen WH, Lin SC, Chen CC. STAR Protoc. 2025 Jun 20;6(2):103800. doi: 10.1016/j.xpro.2025.103800. Epub 2025 May 5. PubMed |
| Substantia nigra modulates breathing rate via locus coeruleus. Gu BM, Kim JG, Hossain A, Cron GO, Lee JH. iScience. 2025 Apr 14;28(5):112423. doi: 10.1016/j.isci.2025.112423. eCollection 2025 May 16. PubMed |
| Coding principles of dopaminergic transmission modes. Huang L, Chang Y, Yang Z, Lynch WJ, Venton BJ. Sci Adv. 2025 May 30;11(22):eadx6367. doi: 10.1126/sciadv.adx6367. Epub 2025 May 28. PubMed |
| Basolateral amygdala dopamine transmits a nonassociative emotional salience signal. Brickner MA, Szot WE, Wolff AR, Thomas MJ, Saunders BT. bioRxiv [Preprint]. 2025 May 16:2025.05.15.654323. doi: 10.1101/2025.05.15.654323. PubMed |
| Dopamine encodes deep network teaching signals for individual learning trajectories. Liebana S, Laffere A, Toschi C, Schilling L, Moretti J, Podlaski J, Fritsche M, Zatka-Haas P, Li Y, Bogacz R, Saxe A, Lak A. Cell. 2025 Jul 10;188(14):3789-3805.e33. doi: 10.1016/j.cell.2025.05.025. Epub 2025 Jun 11. PubMed |
| Brain region-specific gain modulation of place cells by VIP neurons. Lenkey N, Garvert AC, Neubrandt M, Kriener B, Vervaeke K. Nat Commun. 2025 Jul 1;16(1):5863. doi: 10.1038/s41467-025-60679-4. PubMed |
| Biased thalamic innervation onto the distinct subregion where dopamine receptor 1 is dominantly expressed in the caudal striatum. Kadono F, Wang J, Kobayashi K, Karube F, Fujiyama F. Neurosci Res. 2025 Sep;218:104930. doi: 10.1016/j.neures.2025.104930. Epub 2025 Jun 30. PubMed |
| Limited transmission of mixed convergent signals at the mouse retinogeniculate synapse. Sonoda T, Jiang Q, Jara-Marquez I, Radell H, Ledesma HA, Wei W, Chen C. Neuron. 2025 Oct 1;113(19):3260-3274.e5. doi: 10.1016/j.neuron.2025.06.015. Epub 2025 Jul 21. PubMed |
| Homeostatic scaling of dynorphin signaling by a non-canonical opioid receptor. Li X, Winters ND, Pandey S, Lankford C, Stoveken HM, Smith E, Chang CT, Zucca S, Scampavia L, Spicer T, Martemyanov KA. Nat Commun. 2025 Jul 23;16(1):6786. doi: 10.1038/s41467-025-62133-x. PubMed |
| A neuronal architecture underlying autonomic dysreflexia. Soriano JE, Hudelle R, Mahe L, Gautier M, Teo AYY, Skinnider MA, Laskaratos A, Ceto S, Kathe C, Hutson T, Charbonneau R, Girgis F, Casha S, Rimok J, Tso M, Larkin-Kaiser K, Hankov N, Gandhi A, Amir S, Kang X, Vyza Y, Martin-Moraud E, Lacour S, Demesmaeker R, Asboth L, Barraud Q, Anderson MA, Bloch J, Squair JW, Phillips AA, Courtine G. Nature. 2025 Oct;646(8087):1167-1177. doi: 10.1038/s41586-025-09487-w. Epub 2025 Sep 17. PubMed |
| Synaptic organization and associative learning-related activity of basolateral amygdala interneurons. Baldi R, Muthuswamy S, Yasmin F, Quadir S, Zaidi D, Kwon M, Kandil I, Johnson K, Loomba N, Patel S. Cell Rep. 2025 Oct 28;44(10):116295. doi: 10.1016/j.celrep.2025.116295. Epub 2025 Sep 18. PubMed |
| A hypothalamic circuit for anticipating future changes in energy balance. Walker SJ, Lowenstein ED, Douglass AM, Madara JC, Resch JM, Tao J, Lowell BB. bioRxiv [Preprint]. 2025 Sep 27:2025.09.27.678865. doi: 10.1101/2025.09.27.678865. PubMed |
| Distinct representations of economic variables across regions and projections of the frontal cortex. Majumdar A, Ashcroft C, Fritsche M, Tan S, Zatka-Haas P, Folsz O, Walker N, Mistry L, Rominto AM, Tvrdic M, Molnar Z, Atilgan H, Packer AM, Butt SJB, Lak A. Neuron. 2025 Dec 17;113(24):4232-4244.e8. doi: 10.1016/j.neuron.2025.09.027. Epub 2025 Oct 16. PubMed |
| Hippocampal OLM interneurons regulate CA1 place cell plasticity and remapping. Udakis M, Claydon MDB, Zhu HW, Oakes EC, Mellor JR. Nat Commun. 2025 Nov 11;16(1):9912. doi: 10.1038/s41467-025-64859-0. PubMed |
| Cholecystokinin modulates age-dependent thalamocortical neuroplasticity. Li X, Feng J, Hu X, Zhou P, Chen T, Zheng X, Jendrichovsky P, Wang X, Chen M, Li H, Chen X, Zeng D, Zhang M, Xiao Z, He L, Bello ST, He J. Elife. 2025 Nov 20;13:RP101513. doi: 10.7554/eLife.101513. PubMed |
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