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pSTARR-seq_human Citations (12)

Originally described in: Genome-wide quantitative enhancer activity maps identified by STARR-seq.
Arnold CD, Gerlach D, Stelzer C, Boryn LM, Rath M, Stark A Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science.1232542. Epub 2013 Jan 17.
PubMed Journal

Articles Citing pSTARR-seq_human

Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome. Vockley CM, D'Ippolito AM, McDowell IC, Majoros WH, Safi A, Song L, Crawford GE, Reddy TE. Cell. 2016 Aug 25;166(5):1269-1281.e19. doi: 10.1016/j.cell.2016.07.049. PubMed
High-resolution genome-wide functional dissection of transcriptional regulatory regions and nucleotides in human. Wang X, He L, Goggin SM, Saadat A, Wang L, Sinnott-Armstrong N, Claussnitzer M, Kellis M. Nat Commun. 2018 Dec 19;9(1):5380. doi: 10.1038/s41467-018-07746-1. PubMed
Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2. Malik V, Glaser LV, Zimmer D, Velychko S, Weng M, Holzner M, Arend M, Chen Y, Srivastava Y, Veerapandian V, Shah Z, Esteban MA, Wang H, Chen J, Scholer HR, Hutchins AP, Meijsing SH, Pott S, Jauch R. Nat Commun. 2019 Aug 2;10(1):3477. doi: 10.1038/s41467-019-11054-7. PubMed
STARR-seq and UMI-STARR-seq: Assessing Enhancer Activities for Genome-Wide-, High-, and Low-Complexity Candidate Libraries. Neumayr C, Pagani M, Stark A, Arnold CD. Curr Protoc Mol Biol. 2019 Sep;128(1):e105. doi: 10.1002/cpmb.105. PubMed
CRUP: a comprehensive framework to predict condition-specific regulatory units. Ramisch A, Heinrich V, Glaser LV, Fuchs A, Yang X, Benner P, Schopflin R, Li N, Kinkley S, Romer-Hillmann A, Longinotto J, Heyne S, Czepukojc B, Kessler SM, Kiemer AK, Cadenas C, Arrigoni L, Gasparoni N, Manke T, Pap T, Pospisilik JA, Hengstler J, Walter J, Meijsing SH, Chung HR, Vingron M. Genome Biol. 2019 Nov 8;20(1):227. doi: 10.1186/s13059-019-1860-7. PubMed
Candidate silencer elements for the human and mouse genomes. Doni Jayavelu N, Jajodia A, Mishra A, Hawkins RD. Nat Commun. 2020 Feb 26;11(1):1061. doi: 10.1038/s41467-020-14853-5. PubMed
Transcription imparts architecture, function and logic to enhancer units. Tippens ND, Liang J, Leung AK, Wierbowski SD, Ozer A, Booth JG, Lis JT, Yu H. Nat Genet. 2020 Oct;52(10):1067-1075. doi: 10.1038/s41588-020-0686-2. Epub 2020 Sep 21. PubMed
A systematic evaluation of the design and context dependencies of massively parallel reporter assays. Klein JC, Agarwal V, Inoue F, Keith A, Martin B, Kircher M, Ahituv N, Shendure J. Nat Methods. 2020 Nov;17(11):1083-1091. doi: 10.1038/s41592-020-0965-y. Epub 2020 Oct 12. PubMed
Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites. Kulik M, Bothe M, Kibar G, Fuchs A, Schone S, Prekovic S, Mayayo-Peralta I, Chung HR, Zwart W, Helsen C, Claessens F, Meijsing SH. Nucleic Acids Res. 2021 Apr 19;49(7):3856-3875. doi: 10.1093/nar/gkab185. PubMed
Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands. Roberts BS, Partridge EC, Moyers BA, Agarwal V, Newberry KM, Martin BK, Shendure J, Myers RM, Cooper GM. Genome Res. 2021 May;31(5):866-876. doi: 10.1101/gr.270751.120. Epub 2021 Apr 20. PubMed
Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Glaser LV, Steiger M, Fuchs A, van Bommel A, Einfeldt E, Chung HR, Vingron M, Meijsing SH. Nucleic Acids Res. 2021 Dec 2;49(21):12178-12195. doi: 10.1093/nar/gkab1100. PubMed
An unbiased AAV-STARR-seq screen revealing the enhancer activity map of genomic regions in the mouse brain in vivo. Chan YC, Kienle E, Oti M, Di Liddo A, Mendez-Lago M, Aschauer DF, Peter M, Pagani M, Arnold C, Vonderheit A, Schon C, Kreuz S, Stark A, Rumpel S. Sci Rep. 2023 Apr 25;13(1):6745. doi: 10.1038/s41598-023-33448-w. PubMed

Associated Plasmids

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