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We narrowed to 905 results for: NSI

Showing: 331 - 360 of 905 results
  1. Plasmids 101: Golden Gate Cloning

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    ...vector + insert may spontaneously religate, this transient construct retains functional Type IIS sites and...be scarless. Golden Gate assembly is also less expensive than many commercial cloning methods. Golden ...amenable to "domestication", you might want to consider using an alternative method like Gateway cloning...cloning or Gibson assembly. Another important consideration is the design of flanking overhangs. Although...
  2. Working with Nuclear Receptors

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    Blog Post
    ... multitude of therapeutic indices, including hypertension, cancer, diabetes, cardiovascular disease, cholesterol...receptor research, and has generated a set of comprehensive datasets that collectively address many important...of coregulators in HeLa cells was the first comprehensive analysis of the interactome of these key regulatory... between laboratories. The development of the transient transfection platform for assaying transcriptional...
  3. CRISPR Methods for Bacteria: Genome Engineering, CRISPRa, CRISPRi, Base Editing, and More

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    Blog Post
    ... in E. coli. The system available from Addgene consists of two plasmids: pCas9: carries Cas9 and chloramphenicol... enable gRNA-directed transposition. INTEGRATE consists of four major components including (1) a CRISPR... ability to multiplex repression. Using a Tet responsive promoter to drive expression of a catalytically...and developed new, more tightly controlled, Tet responsive promoters to avoid leaky activation of the system...technology can have on the human microbiome. You can consider the microbiome as a collection of organisms, their...
  4. Design Tips for Prime Editing

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    Blog Post
    ...a prime editing guide RNA (pegRNA). The pegRNA consists of a CRISPR gRNA extended to include a primer ... BioRender.com. The first base of the 3′ extension of the pegRNA should not be C. A C base is speculated...al., 2014). Figure 3: pegRNAs whose 3′ extension begins with a C base can cause unwanted base pairing...influence the success of your prime edit. If possible, consider following these suggestions: Edit the PAM along...
  5. Hot Plasmids and Viral Preps - March 2021

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    Blog Post
    ...categories: probes and editors. A probe array may consist of at least two sensor modules targeting a specific...auxin inducible degron (AID) system has been extensively used in C. elegans since 2015 to conditionally... which can be easily visualized.  The tool-kit consists of highly useful vectors compatible with Gibson.... Check out the new additions.  Image calcium transients in PV interneurons with AAV-S5E2-GCaMP6f, now...
  6. 7 Simple Strategies to Resolve Conflicts with Difficult Supervisors

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    Blog Post
    ...time moaning about their troubles, Silent or unresponsive clams, who seem to ignore you and your questions...communicate their ideas confidently while also considering the needs of other people. Some students and ...for it. Do not take criticism personally or get defensive. Look at the problem from their viewpoint, and... you even when you meet in person (silent or unresponsive clam), you will probably need support from your...
  7. The AAVantages of AAV in CRISPR Screens

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    Blog Post
    ...gotten larger, easier, and more comprehensive thanks to the consistent development and improvement of ... for each experiment. Additional considerations One of the downsides to using AAV is the limited packaging...
  8. PRIDICT: Predicting Efficiencies of Prime Editing Guide RNAs

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    Blog Post
    ...The pegRNA consists of a target-complementary spacer, a scaffold sequence, and an extension sequence containing...screens such as PRIDICT/PRIDICT2.0 provide valuable insights into pegRNA editing efficiencies for specific ...experiments, thus saving you time, sweat, and money on extensive optimization efforts. This holds true for any ...
  9. Plasmids 101: Protein Expression

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    Blog Post
    ...Overall the general strategy for protein expression consists of transfecting cells with your DNA template of... Mammalian systems can express proteins both transiently or through stable cell lines. Both methods produce...recombinant proteins from plants however can be expensive and time consuming as plant tissues themselves...applications. Cell-free expression systems however, are expensive and very technically challenging to use. Alyssa...
  10. Antibodies 101: Conventional vs Spectral Flow Cytometry

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    Blog Post
    ...which spectral flow cytometry requires special considerations. Conventional flow cytometry During conventional...cytometry for a given experiment, it is important to consider how many parameters you want to use in a given...and spectral flow cytometry, it is important to consider the expression levels of the markers you are including...molecules conjugated together) can be especially sensitive to batch effect. For example, when a PE molecule...
  11. PCR Applications for Copy Number Variation Assays

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    Blog Post
    ...most starting materials, and is not particularly sensitive. The fluorescent signal can be affected by AT-...Image courtesy of: Ygonaar    Taqman is more sensitive than Sybr, with less background noise, and is ...amplified in the same reaction. Taqman’s increased sensitivity allows for a more confident determination of ...approach is right for your experiment. You’ll have to consider:  Resources needed Most molecular biology labs...
  12. When is a Monomer not a Monomer? The Top Three Ways Your Favorite Fluorescent Protein Oligomerizes in Cells

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    Blog Post
    ...all seriousness, EGFP/GFP has a real nontrivial propensity to noncovalently dimerize. That means that your...to not produce artifacts in your experiments. Considerable effort has gone into making FPs monomeric, yet...actually monomeric, at least in practical terms. The propensity of a particular type of molecule to form a dimer...study of GFP-based FRET, with application to intrinsically unstructured proteins. Protein Sci, 2007. 16...
  13. Transgenic Organisms, Cas9 Gene Drives, and Appropriate Safeguards

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    Blog Post
    ...RNA-guided gene drives in the summer of 2014 (after extensive discussions with biosecurity experts, ecologists...gene drives intended for eventual release should consider building an appropriate immunizing reversal drive...not use them whenever applicable?Against this, consider the cost of an accidental release. Science relies...trusted to handle such a powerful technology responsibly. An accidental release would be particularly ...
  14. Tips for Using BLAST to Verify Plasmids

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    Blog Post
    ...DDBJ, and PDB sequences and may be the most comprehensive for searching. Timesaving Tip #1: If you know...searches! Now, before you click the BLAST button, consider the Program Selection parameter, as this will ...the alignment at a more distal amino acid. We consistently run our blastx searches with the “Low complexity...101: How to Verify Your Plasmid Plasmids 101: An Inside Look at NGS Plasmid Quality Control Learn about...
  15. AAVs in Retinal Gene Therapy

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    Blog Post
    ...abandoned early on due to its considerable immunogenicity and its transient expression. LV results in long...been shown to to transduce the retina but only transiently. However new viral vectors capable of providing...disease-causing genes, including the RPE65 gene responsible for an autosomal recessive, severe, childhood-onset...
  16. Isolating Genomic Regions of Interest with the CRISPR System

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    Blog Post
    ...specific genomic region using the CRISPR system, consisting of dCas9 and targeting gRNA, to identify molecular...isolation of a specific genomic region was an intensive process. One method required insertion of a recognition...vitro" form. In this form, the CRISPR complex, consisting of a recombinant dCas9 protein and synthetic ...high-affinity purification. This system is both highly sensitive and specific and allowed the Xu lab to identify...
  17. An Introduction to Adenovirus

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    Blog Post
    ...translation. Its genome consists of “early” (E) and “late” genes, and the transition between early and late...length. Human adenovirus type 5 (hAdV-C5) can be considered the prototype, although many viruses infecting...the majority of adenoviral vector expression is transient due to the fact that AdV surface proteins (especially...
  18. The Effect of COVID-19 on Liu Lab Plasmid Requests From Addgene Data

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    Blog Post
    ...data with a 7-day rolling mean gave us a crude insight into the magnitude of the effect COVID-19 had on...holiday effects. Based on these observations, we considered the following (noiseless) model for our data:...factor 𝜙z if t is during event z. The "events" we considered for our model were weekends, Christmas/New Years...Europe. To improve the stability of our model, we considered only the 10 papers with more than 10 unique order...
  19. Negative Can Be Positive: Open AAV Data with Addgene

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    ...Working with AAV vectors in neuroscience Let’s consider my first challenge when I started working with...and that it often provides incredibly valuable insight into one’s work. As a community, we must therefore...., Grames, M. S., & Klein, R. L. (2018). More expansive gene transfer to the rat CNS: AAV PHP.EB vector...with Addgene’s AAV Data Hub!Data Freedom: The Expansion of Data Sharing in Research Publications...
  20. Deep Dive: Fixing and Permeabilizing for Immunofluorescence

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    ...method into six general steps and outlined the considerations to be made during each step. Now that you know...method of fixation is good for epitopes that are sensitive to cross-linking, but it doesn’t preserve sample...binding to any target protein that is still on the inside of the cell. However, assuming you do need to permeabilize... then optimizing from there is a good option.  Consider your target - if you are studying a membrane protein...
  21. Tips from the Repository Trenches: Using Barcodes to Track Samples

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    ... in transit and some have been transported across oceans and continents. Each deposit may consist of anywhere...your lab ensure that sample ID’s are unique, consistently labeled, and that numbers are not switched around...Resources Avaliable on the Addgene Blog Read more Inside Addgene Posts! Learn all about Plasmids in our ...
  22. A Career in Grants: How To Become a Grant Professional

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    ...research grants, especially in the sciences and by extension to scientifically oriented nonprofits. Like Deb...career path changed when I was asked if I would consider consulting for a particular grant by another state...entering the Grants Profession. Whether you’re transitioning from a previous career or you’re starting your...above and formalizes your development. You may consider earning a degree in Grant Writing, Management ...
  23. Plasmids 101: Protein tags

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    ...these challenges, researchers have amassed a considerable molecular tool box of tags and fusion proteins...deploy proteosomes to degrade what the cell might consider junk protein. Though there are a number of chemical...EINAPTDGKV EKVLVKERDA VQGGQGLIKI GVHHHHHH  9 Combo Consists of a bacterially derived in-vivo biotinylation...and Gly residues   This article is not a comprehensive guide to all tags, but rather a quick overview...
  24. Plasmids 101: Shuttle Vectors

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    ...vector into your target cells; you also have to consider how to keep it there. In fast-growing populations...needed to retain the vector as cells divide. In transient transfection, the vector remains episomal, meaning...about vector replication at all. In these cases, transient transfection may be sufficient for your needs ...involved in the production of viral vectors, we consider the viral vectors themselves to be a distinct ...
  25. Tips for Writing a Good Cover Letter

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    ...letters, while higher-level jobs are more likely to consider cover letters an important part of the application... content team, where writing is a core skill, considers cover letters to be very important. On the other...unofficial poll, hiring managers also said that they considered cover letters to be more important for higher-level...communication skills” try giving an example, like “I have extensive communication experience, having given more than...
  26. Bacterial Toxin-antitoxin Systems as Molecular Biology Tools

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    ...systems that are widely present in bacteria. They consist of a toxin which can affect a variety of cellular...division”). The encoded toxin-antitoxin system consists of CcdB (toxin) and CcdA (antitoxin) where CcdB...systems Because restriction modification systems consist of two enzymes that have opposing activities, it...the systems just described, the hok/sok systems consist of three components: Host killing (hok), a long-living...
  27. What's Your Organism? Expanding Genomic Tools via the NSF EDGE Program

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    ...that evolved in the last 10,000 years (which is considered recent). They have diverse traits with good genetic... and one is promiscuous and the gene that is responsible is understood. It’s possible to actually silence... to get a recombinant because this process is expensive. They are using a cool fluorescent indicator system...trying to replace embryo injection (hard to do, expensive, not every lab has the capability) with receptor...
  28. CRISPR 101: Targeting RNA with Cas13a (C2c2)

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    ...within Cas13a are essential for RNA cleavage, consistent with known roles for HEPN domains in other proteins...located at the 3’ end of the spacer sequence and consists of a single A, U, or C base pair. In bacteria,...bacterial cells will likely be limited by the propensity of Cas13a to bind and cleave RNA non-specifically...Finally (and perhaps most interesting), Cas13a’s propensity to cleave any RNAs after binding a user-defined...
  29. Antibodies 101: Reading a Flow Plot

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    ...show a high density of cells, while contour lines that are spread apart show a low density of cells (Figure... a ‘gate’; it tells the machine that everything inside the gate is one population and everything outside...Heat maps are often used to indicate the relative density of cells. You can see both of these features in...
  30. Four Base Editing Reporters to Monitor and Enrich Editing in Real-time

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    ...The ACE reporter is a bicistronic construct that consists of a mutated mCherry and a downstream constitutively...that results in the restoration of fluorescence. Transient reporter for editing enrichment (TREE) The Wang...Wang and Brafman lab developed a transient reporter for editing enrichment (TREE) to purify single base...Schwarz G, Nguyen T, Wang X, Brafman DA (2019) A transient reporter for editing enrichment (TREE) in human...
Showing: 331 - 360 of 905 results