We narrowed to 919 results for: IRE;
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TypeBlog Post...Optimized dicot prime editing enables heritable desired edits in tomato and Arabidopsis. Nature Plants,..., M. D., Wu, J. C., & Garcia-Marcos, M. (2024). Direct interrogation of context-dependent GPCR activity...
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Anatomy of a Plasmid Page at Addgene
TypeBlog Post...in the depositing lab, although you may have an entirely different use in mind! This section of our plasmid...in the E. coli lab strain DH5a, but others may require strains such as ccdB survival (for Gateway plasmids... -
Transgenic Organisms, Cas9 Gene Drives, and Appropriate Safeguards
TypeBlog Post..., the drive could eventually spread through the entire wild population with unpredictable ecological effects...ecological, and reproductive confinement typically require very little effort to implement (depending on the... -
Interview: Nicola Patron on Plant Synthetic Biology, MoClo, and More
TypeBlog Post...tools work in any plant? Patron: The MoClo kit is entirely for dicots, not grasses and wheat, but we do work... Patron: I started my Twitter account recently inspired by an academic in literature who gave a talk to... -
Which Fluorescent Protein Should I Use?
TypeBlog Post...emission is green or red light. For example, T-Sapphire, LSSmOrange, and LSSmKate. Fluorescent Sensors...many FPs (particularly those derived from GFP) requires oxygen. Therefore, these FPs cannot be used in... -
Drew Endy Introduces the Biobrick Public Agreement Plasmid Collection
TypeBlog Post...think of as an operating system for engineering an entire cell. Typically when people use plasmids, they ...much easier. So you could imagine engineering the entirety of a cell. That's a big long-term technical challenge... -
Antibodies 101: Producing Recombinant Antibodies
TypeBlog Post...choose, you may not be able to elute the antibodies directly into your preferred buffer. If that’s the case...suggests, you may also concentrate your prep to the desired concentration using these columns. If you are conjugating... -
The Effect of COVID-19 on Liu Lab Plasmid Requests From Addgene Data
TypeBlog Post...modeling isn’t up your alley, feel free to skip directly to the results. To start modeling our data, we...chemistry and chemical biology. David R. Liu is Director of the Merkin Institute and Vice-Chair of the ... -
Negative Can Be Positive: Open AAV Data with Addgene
TypeBlog Post...impacted the experiments we wanted to perform. It required a great deal of time and effort to test and optimize...J. O., Outram, S., Koenig, B. A., Pereira, S., McGuire, A. L., & Lázaro-Muñoz, G. (2020). Researcher Perspectives... -
Deep Dive: Fixing and Permeabilizing for Immunofluorescence
TypeBlog Post...availability following cross-linking fixation; they require an additional step generally referred to as Antigen...retrieval here because it’s not quite as ubiquitously required for IF as fixing and permeabilizing. References... -
What’s in Your Tube?: A Quick Guide to Measuring DNA by Spectrophotometry
TypeBlog Post... just be sure to check that your RNase has not expired (or been forgotten). Improving read accuracy...purification protocol. Are any of your materials expired? Did you pipette carefully? Remember to discard... -
New Optimized Genome-wide CRISPRko, CRISPRi, and CRISPRa Libraries
TypeBlog Post... that if an essential gene plays a role in the desired screening phenotype, it may be missed because it's...transcriptional machinery to dCas9 and its RNA directed binding site. These methods include the fusion... -
Better Dyeing Through Chemistry & Small Molecule Fluorophores
TypeBlog Post...the frontiers of fluorescence microscopy often requires more photons. For example, moving from transient...Unlike other systems, no genetically encoded tag is required as the small-molecule binding motif targets endogenous... -
Lentiviral Vector Uses and Overview
TypeBlog Post...infect. Finally, the transfer plasmid encoded the desired transgene flanked by HIV-1 long terminal repeats...integrase-deficient lentiviral vectors for applications that require the large genetic capacity of a lentiviral vector... -
CRISPR Antimicrobials
TypeBlog Post... PMC4466736. 5. Ando, Hiroki, Sebastien Lemire, Diana P. Pires, and Timothy K. Lu. “Engineering Modular... -
Interview: Hodaka Fujii on enChIP, New CRISPR Tools, and More
TypeBlog Post...affinity purification, in 2009. However, iChIP requires insertion of recognition sequences of an exogenous...into the target region. However, it struck me that direct use of such engineered DNA-binding molecules even... -
Lab to Office Culture Shock
TypeBlog Post...process of onboarding a new employee who's coming directly from grad school. The transition has been a bit...thought they would be working in a lab for their entire career. Yet even success in academia means you’... -
Twenty Years of Sharing: Expanding Accessibility
TypeBlog Post... with a distributor for that country. In China, direct shipments weren’t able to clear import control...., we launched the Addgene blog for topics that required a lot of nuance or detail. By the end of 2023,... -
Plasmids 101: Broad Host Range Plasmids
TypeBlog Post...as Rep or other initiator proteins, they do not require host proteins for replication and can maintain ...pneumophila, Methylophilus methylotrophus, Myxococcus virescens, M. xanthus, Proteus rettgeri, P. mirabilis, Providencia... -
Overcoming the AAV Size Limitation for CRISPR Delivery
TypeBlog Post...drawbacks limit the utility of these systems: St1Cas9 requires a very specific PAM sequence that limits the number...SaCas9, Zhang’s group used an approach called BLESS (direct in situ breaks labeling, enrichment on streptavidin... -
How to Be an Excellent Trainee
TypeBlog Post...someone who provides career advice and offers direction on your scientific project. Your scientific mentor...meaningful relationships in your new lab, learn the required techniques, and be ready to take on trainees one... -
Binning Singletons: Tackling Conference Networking When You Don’t Know Anyone
TypeBlog Post...she had a few minutes to point me in the right direction for my future work. She graciously took me for... Candace Williams, Dave Baltrus, Geof Hannigan, Irene Newton, Juliet Johnston, Kat Milligan-Myhre, Kim... -
Transferable Skills Guide: External Collaborations
TypeBlog Post...about its limited resources. Rather than developing entire new teams in house to solve every problem (although...collaborators’ professional developments without directly contacting them. One great way to transition from... -
AAV Titers: Where Do They Come From And What Do They Mean?
TypeBlog Post...solution. Since this technique is intensive and requires an electron microscope, it is not routinely performed...a few ways: Absolute quantification by qPCR requires generating a standard curve of known concentration... -
Using Video to Share Your Science: We Share Science
TypeBlog Post...all of these platforms were developing, Google acquired Youtube and has been growing its online video ..., also known as the science videographer, is a retired botanist and oceanographer who has a blog and several... -
Healthcare Consulting: A Door to the Business of Life Sciences
TypeBlog Post...They enjoy the fact that each new challenge will require knowledge of new topics and that they will switch...analyses skills were applicable to my cases. I can directly use my understanding of the molecular behaviors... -
Getting the Most from Your Lentiviral Transduction
TypeBlog Post...best to start from scratch. Obtain a vial of the desired cell line from a reputable distributor such as ...course of infection. These binding events can be impaired by the electrostatic repulsion of the negatively... -
Avoiding the Dark Side of Fluorescent Protein Fusions with mOX FPs
TypeBlog Post...sequences, which often have absolute position requirements. For example, a KDEL ER retrieval sequence only...for subcellular environment. Currently, she is a SPIRE postdoctoral fellow at the University of North Carolina... -
Fluorescent Proteins 101: GFP Fusion Proteins - Making the Right Connection
TypeBlog Post...linker. When both orientations are available, a direct comparison of these fusion proteins may reveal ...beta-sheets or alpha helices). An additional requirement is that the site of insertion does not interact... -
Hot Plasmids: Summer 2024
TypeBlog Post...electron microscopy (cryo-EM) protocols typically require high concentration and purity of the target molecule...particles (eVLPs) offers an option to transduce cells directly with ribonucleoprotein cargo. eVLPs contain no... -
Antibodies 101: Introduction to Gating in Flow Cytometry
TypeBlog Post...forward scatter (FSC) and side scatter (SSC). To acquire these measurements, the cytometer illuminates the... “lymphocyte + single cell + live” population, acquired from the previous gating pipeline, about 53% of... -
Quick Guide to Near-Infrared Fluorescent Proteins
TypeBlog Post...., Huisman, T.M., Verkhusha, V.V. & Hodgson, L. Direct multiplex imaging and optogenetics of Rho GTPases...Piatkevich, K.D. et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage... -
How to Negotiate a Successful Lab Start Up Budget
TypeBlog Post...to support your work. For example, if your work requires specialized equipment, try finding institutes ... institutes were able to provide the resources required for him to meet his goals. Therefore, he turned... -
Plasmids 101: Repressible Promoters
TypeBlog Post...Similarly, placing UAS upstream of a transgene permits directed expression of that gene in cells that also express...systems, allowing for more complex control over desired gene expression. Take a look at all of the options... -
Scientific Reproducibility - Focusing on Solutions at the Minisymposium on Reproducibility
TypeBlog Post...antibodies. IPI is working to address this issue directly by creating well characterised antibodies against...solutions that could save both your lab and the entire research enterprise time and funds. It’s time to... -
Fluorescent Proteins 101: Photoactivatable Fluorescent Proteins
TypeBlog Post...one since the formation of mEosFP’s chromophore requires a temperature below 30°C and this is not ideal...fluorescence localization data. However, this technique requires harsh fixation conditions to preserve cellular... -
CRISPR 101: Multiplex Expression of gRNAs
TypeBlog Post...cell that gets the plasmid contains all of the desired gRNAs. This increases the chance that all the edits...editing, and a subsequent curing protocol that requires only 2-3 hours incubation. Kondo Lab multiplexed... -
Deep Dive: qPCR
TypeBlog Post... you to measure the intensity of signal over an entire cycle. Since signals are produced by the presence... practice, multiplexing is quite difficult and requires significant optimization to ensure the results... -
A Case Study of Addgene Bioinformatics
TypeBlog Post...helped us manage our data. To quote Jason Niehaus, Director of Data Science and head of our Data Team, “Our... -
#DeckTheLab to Win a Tasty Winter Treat This Holiday Season
TypeBlog Post...December are eligible to win a: That will warm up the entire lab (hint: you might need some mini marshmallows...