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... vectors that can be safely used in laboratory settings. These engineered lentiviral vectors have many...lentiviral vectors are also popular in clinical settings for the delivery of gene therapies. Lentiviral...DNA. However, if the plasmid contains a Gateway cassette containing the ccdB gene, a ccdB-resistant strain...

...vasculature (adult marmosets), biased toward astrocytes (adult rhesus macaque) Rats, marmosets, green monkeys... including ENS (adult marmosets, infant rhesus macaques) Mice, rats, marmosets, rhesus macaques Unknown... screened in marmosets. AAV.CAP-Mac effectively transduces vasculature in adult marmosets (Chuapoco et...transduction levels in marmoset brain, with both neurons and astrocytes targeted. While marmoset liver transduction...AAV.CAP-B22 CNS: neurons and astrocytes Mice, marmosets Unknown Goertsen, Flytzanis, et al., 2022 ... of inhibitory and excitatory neurons Mice, marmosets Unknown Brown et al, 2021 Goertsen, Flytzanis...

...side of a stop cassette, upstream of an effector gene. In cells where the stop cassette is removed during...just a fraction of a single genetically-defined subset of cells. By labeling fewer cells in a population...cells will express the effector or retain the stop cassette following recombination. Image from Isaacman-Beck... genetic tool that allows for the labeling of a subset of cells with the same genetic makeup, overcomes...effector is expressed. In cells where the stop cassette remains, the effector is not expressed and the...attP sites to drive expression of either a stop cassette or an effector gene. HDVR (2X Hepatitis Delta ... Truncating the attP site upstream of the stop cassette results in decreased efficiency of recombination...

... satellite colonies? Ampicillin Fair {% icon icon_set="fontawesome-5.14.0" name="Check" style="SOLID...decorative" title="Check icon" %} Just bacteria {% icon icon_set="fontawesome-5.14.0" name="Check" style="SOLID...Excellent No Bacteria and eukaryotes (G418) {% icon icon_set="fontawesome-5.14.0" name="Check" style="SOLID...purpose="decorative" title="Check icon" %} {% icon icon_set="fontawesome-5.14.0" name="Check" style="SOLID...Check icon" %} Carbenicillin Excellent {% icon icon_set="fontawesome-5.14.0" name="Check" style="SOLID...

... switch conditional knock-in cassette. As shown in Figure 2, the cassette should contain a reporter DNA...For this FLEx switch to successfully work, the cassette would need to contain the BFP coding sequence ...antisense orientation (Figure 1, top). The entire DNA cassette would be flanked by two pairs of target sites-...in the opposing orientation, you have created a cassette that will express GeneR only in the presence of...recombination event would excise the reporter from the cassette, allowing for expression of GeneR. This allows...

...To overcome this obstacle, a positive selection cassette can be incorporated, and used during the differentiation..., but defective for integration [4], the donor cassette is removed leaving behind no accessory transposon...recombination and Footprint-Free™ removal of the selection cassette by excision-only piggyBac™. Image courtesy of ...recombinase technology (Cre/loxP) to remove the donor cassette. While this method can be effective, a loxP site..., it is possible to make the ITR and selection cassette disrupt the target site for the nuclease thereby...preventing re-cutting. Transposase removal of the cassette later restores the target sequence. This allows...

...resource for spatial biology enthusiasts. This dataset currently includes 1049 community-validated reagents...into conversations with other users. The entire dataset can be downloaded from Zenodo, including the reagent...table or by downloading directly from the Zenodo dataset.     Figure 2: Screenshot showing reagent...HuBMAP) antibody metadata standards. And the dataset is rich. Experimental data includes reagent type...protocols, panels, publications, software, and datasets. It’s also a great place for anyone who has used...

... Biological General Repository for Interaction Datasets (BioGRID) in order to increase the accessibility...accessibility of CRISPR-based phenotypic screen datasets. Original published CRISPR screen data is curated and ...and ready access to stably archived large-scale datasets by computational biologists. Figure 1: ...other species. By accurately compiling genome-wide datasets, which are often obscured in large supplementary...but also allows cross-interrogation of different datasets that might otherwise be hard to identify. ...

...bacterial selection cassette for growth and cloning in bacteria and a mammalian selection cassette to screen for...cells, you will not need a mammalian selection cassette (e.g. 1435 pSG5L Flag HA). You can also upgrade...with an integrating vector expressing a selection cassette with 5′ and 3′ flanking sequences matching the...fusion proteins. Pick your promoter, selection cassette and visualization vehicle to conduct your custom...

...Producing yeast expression cassettes Traditionally, generating expression cassettes for yeast transformation...-fidelity polymerase) is the ability to remove, reset and ligate mismatched overhangs, yielding scarless...Cloning sgRNAs Production of Yeast Expression Cassettes Generating constructs with multiple point mutations...regions of homology and inserted into a linearized cassette, ready for transformation into yeast that same...

...resistance cassette and you aren’t introducing an additional antibiotic resistance cassette along with...plasmid backbone contains a kanamycin resistance cassette, you would plate the cells on kanamycin-containing...carrying plasmids that contain a kanamycin resistance cassette will grow. However, often times, the plasmid backbone...

... Scientists introduce an antibiotic resistance cassette within the coding region of the gene they are ...is best practice not to use the same resistance cassette for the mutation and for plasmid selection. Additionally... vector typically has two separate resistance cassettes and your gene of interest is cloned into/inactivates...completely removes (in the case of Gateway cloning) one cassette. Counterselection allows the scientist to select...

... background. Their new method uses a selection cassette containing genes for hygromycin resistance and...heat-shock inducible Cre to generate a self-excising cassette (SEC). To make it possible fluorescently label...into the genome. Figure 1: Self-excising cassette schematic from Dickinson et al. (2015). Used with...Engineering with a Self-Excising Drug Selection Cassette. Dickinson DJ, Pani AM, Heppert JK, Higgins CD...

...strewn across the floor. In the final wake it all settles down and the value of each item changes from what...individual; the  community as a whole has yet to settle on any true kind of value. I’ve dubbed this the...software design that is applicable to only one, or a subset of organisms. In only a few cases the software ... agnostic. Most tools are exclusive to one or a subset of organisms. Examples: “organism agnostic”, “model... you can rule out any tool that limits you to a subset of specific genomes. These are most of the tools...

...targeting the genes responsible for both early onset and late onset AD. In this study, the group showed that...connected to the early onset of Alzheimer’s disease, as well as those that play into late onset AD (5).     ...

...available metagenomic datasets with biophysical studies and the potential of mining datasets for research and...Every few months we highlight a subset of the new plasmids in the repository through our hot plasmids...metagenomic data including the Tara Oceans Project datasets. This study demonstrates the power of combining...

...version that fits your setup: Plasmid Backbone Promoter pRSET OCaMP pRSET T7 pAAV-hSYN1...compatible with the lasers available in your microscope setup. Figure 1: Excitation (dotted) and emission...

...aTet-inducible gRNA and a backbone-targeting gRNA cassette for plasmid curing through "self-destruction" ... while pCRISPomyces-2 contains Cas9 and a gRNA cassette. The simpler system of pCRISPomyces-2 displays...). By cloning in two tandem copies of the gRNA cassette, one can reliably knockdown expression of multiple...such a purpose (Selle et al., 2020).  Targeting a subset of bacteria in a population Work from the Lu lab...found early success using CRISPR-Cas to target subsets of bacteria in population based on the presence...

... of a stop cassette upstream of the target gene in the targeting vector. The stop cassette is floxed, ...conditional systems Conditional knockouts or knockins A subset of transgenic mice, conditional knockout/knockin...so Cre-mediated recombination deletes the stop cassette, which permits expression of the target gene. ...

...unbiased data. Therefore, we chose to examine a dataset of Liu lab plasmid requests from Addgene, as a ... requests correlate with paper publication The dataset includes 11,426 plasmid requests over 6 years for...and 03/11/20 -- 05/19/20 (the last date in our dataset) for the U.S. and Europe. To improve the stability...China. An important additional caveat is that our dataset contains plasmid orders from just one lab, which...