We narrowed to 209 results for: dap
-
TypeBlog Post...for assembling the barcoded gRNA library pool. (Adapted from Wong et al., 2016). With a list of gRNA...assembling barcoded combinatorial gRNA libraries. (Adapted from Wong et al., 2016). With CombiGEM and ...
-
Teaching an Old DOG New Tricks: Controlling Protein Activity with GFP
TypeBlog Post...in optogenetics, opening up the possibility of adapting GFP lines for optogenetics experiments in specific...transcription activation domains. Both systems are easily adaptable to neuroscience applications, including optogenetics... -
Plasmids 101: Golden Gate Cloning
TypeBlog Post...few steps. More recently, CRISPR technology has adapted Golden Gate cloning for inserting the appropriate...single gRNA-expressing plasmid, but it can also be adapted to express multiple gRNAs. Addgene has two Golden... -
CRISPR 101: Targeting Non-Coding RNAs with CRISPR/Cas9
TypeBlog Post...polyadenylation (spA) signal. Figure and caption adapted from Hazan and Bester 2021. Alternative ...Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity. Science. 2012;337(6096):816... -
Cpf1 Update: Comparison to Cas9 and NgAgo
TypeBlog Post... the simplest CRISPR systems and the easiest to adapt to genome editing, but the introduction of type ...positions are indicated below each graph. Figure adapted from Kleinstiver et al., 2016. Until recently... -
CrispyCrunch: High-throughput Design and Analysis of CRISPR+HDR Experiments
TypeBlog Post...section below.) For guide design, we decided to adapt the popular guide design tool Crispor by Max Haeussler...Crispresso CrispRVariants AmpliCan We chose to adapt Crispresso by Luca Pinello and Kendell Clement for... -
Fluorescent Proteins 101: Visualizing Subcellular Structures & Organelles
TypeBlog Post...colocalization analysis example is given in Figure 2 (adapted from 4) - Dunn et al. 2011 provides an in-depth.... PubMed Central PMCID: PMC3074624. 5. Bindels, Daphne S., et al. "mScarlet: a bright monomeric red fluorescent... -
Magnetic Control of Proteins: More than a Dream
TypeBlog Post...MagLOV’s parent protein AsLOV2 has already been adapted into a variety of optogenetic tools, they’re optimistic...optimistic that MagLOV can be similarly adaptable into future magnetogenetic tools. Embracing science... -
INTEGRATE: Bacterial Genome Engineering Using CRISPR-Transposons
TypeBlog Post...spreading within and between genomes, and have been adapted for a wide variety of applications - as mutagenesis...at two different incubation temperatures. Data adapted from Vo et al., 2020. In E. coli, the new streamlined... -
To Codon Optimize or Not: That is the Question
TypeBlog Post...the late 1980s, scientists even created a codon adaptation index (CAI) that is based on the codon usage ...10.1038/nrg3051 Sharp PM, Li W-H (1987) The codon adaptation index-a measure of directional synonymous codon... -
The PAM Requirement and Expanding CRISPR Beyond SpCas9
TypeBlog Post...applications. The first non-Cas9 CRISPR protein adapted for genome engineering was Cas12a (formerly Cpf1...targeting flexibility. Cas13a (formerly C2c2) has been adapted for targeted RNA cleavage in mammalian cells. The... -
Four Base Editing Reporters to Monitor and Enrich Editing in Real-time
TypeBlog Post...reporter, and neomycin resistance reporter. Image adapted from Katti et al., 2020. As a proof of concept...Gaudelli et al., 2017). GO is thus a flexible and adaptable tool to identify and enrich for base-editing events... -
What's Your Organism? Expanding Genomic Tools via the NSF EDGE Program
TypeBlog Post...studied in 40 labs as a great model for plant adaptation and speciation. Their phenotypes are diverse ...captivity. Sticklebacks demonstrate unusual parallel adaptation to disparate environments so can be used study... -
Bioinformatics at Addgene
TypeBlog Post...have been developed for a singular purpose (ex. adapter trimming, quality score analysis, k-mer counting...Java, R, etc.) in our pipeline. Crucially, this adaptable property gave us the freedom to use multiple open-source... -
Hot Plasmids - November 2023
TypeBlog Post...trafficked from the “source” to “destination”. Images adapted from Lee and Cheah et al. 2023 bioRxiv (A) and ...:GFP-iPAK4 at 3 or 6 h. Scale bar 5 µm. Images adapted from Lin et al., 2023 bioRxiv, under CC-BY-NC 4.0... -
Hot Plasmids Spring 2024
TypeBlog Post...efficiencies at different loci in U2OS cells. Image adapted from Yan et al. 2024 under a CC-BY license. ...transduction efficiency for the indicated ssAAV5s. Figure adapted from Serrano et al. 2023 under a CC-BY-NC-ND license... -
Hot Plasmids: Summer 2024
TypeBlog Post...structure of the H1.8-GFP-bound nucleosome. Images adapted from Arimura et al. 2024 under CC-BY-NC-ND 4.0 ...3D map with 3.1 Å global resolution (E). Figure adapted from Abe & Lim, 2024 under CC-BY-NC-ND 4.0 license... -
Finding Your Perfect Job After University
TypeBlog Post... culture, and also needed to be resourceful and adapt. By the end of my three months, I fully understood...companies which have more bureaucracy and cannot be as adaptive. I was also surprised to learn that I enjoy ... -
RNA Interference in Plant Biology: New Tools for an Old Favorite
TypeBlog Post...codons, and/or the phenomenon of transcriptional adaptation (Smits et al., 2019; Sztal and Stainier, 2020...Sztal TE, Stainier DYR (2020) Transcriptional adaptation: a mechanism underlying genetic robustness. Development... -
When Fidelity Matters: A frank discussion about ligase fidelity
TypeBlog Post...recombinant plasmid construction (restriction cloning), adaptor ligation for next generation sequencing (NGS) library...PMCID: PMC1978145. 27. Greenough, Lucia, et al. "Adapting capillary gel electrophoresis as a sensitive, ...