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TypeBlog Post...GCE4All, an NIH-funded center located at Oregon State University focused on turning GCE tools developed...in your experiments, GCE4All is a great place to start. They host monthly webinars, workshops, and a bulletin...
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REPLACR Mutagenesis: Replacing In Vitro Recombination Methods
TypeBlog Post... into the bacterial genome. REPLACR-mutagenesis starts out in familiar territory, but quickly diverges...recombination then joins the linear PCR products into stable circular plasmids - no nick repair is needed. Since... -
Back to Bacteria: CRISPR gRNA Multiplexing Using tRNAs
TypeBlog Post...only 44% and 66% indel frequency with the use of standard single gRNA constructs. When PTG constructs with...<200 bp tRNA-gRNA takes up half the space of a standard pol III-gRNA, which will facilitate CRISPR/Cas9... -
CRISPR 101: Non-Homologous End Joining
TypeBlog Post...intervening DNA (“pop-out” deletions) if NHEJ joins the distal ends together. Similarly, it may be possible to...References Bennardo N, Gunn A, Cheng A, Hasty P, Stark JM (2009) Limiting the Persistence of a Chromosome... -
Dos & Don'ts When Publishing a Scientific Manuscript
TypeBlog Post...several considerations. First, it is important to establish the type of audience you want to reach with your...and help you correct any language- and spelling mistakes. A manuscript that is well written looks more ... -
RaPID Detection of RNA-protein Interactions
TypeBlog Post...DNA-protein interactions or to analyze chromatin states (CHIP-seq, FAIRE-seq, Cut & Run) and to detect ...interactions. To address this need, the Khavari lab at Stanford created the RNA-protein interaction detection ... -
Hot Plasmids April 2018 - Protein Degradation, Nanoscopy, FIRE-Cas9, and Yeast Expression Tools
TypeBlog Post...To assess TRIM21 toxicity, Clift et al. created stable cell lines overexpressing TRIM21, finding that ...which is necessary for effective STED), and be photostable over a broad pH range. The four biometric probes... -
Plasmid Tools for Microbiome Studies
TypeBlog Post...resulting in GFP signal. With the addition of standards, the assay is semi-quantitative and can approximate...plasmids and suitability of various antibiotic resistance markers, promoters, and inducible gene expression... -
All in a Twist: dsRNA
TypeBlog Post...However, transcription of thousands of genes is constantly occurring throughout a single cell, so these ... these structures can in turn lead to genome instability. Thus, it’s important to strike a balance between... -
Antibodies 101: Conjugation
TypeBlog Post...possible antibody conjugates (especially if you start to consider clinical applications). But there are...make the process quick and easy. Before getting started, be sure to check that your antibody’s buffer is... -
Adeno Associated Virus (AAV) for Cell and Gene Therapy
TypeBlog Post...that treat disease at the molecular level. For instance, if a disease is caused by a mutation in a single...developing AAV-based therapies. Furthermore, deeper understanding of disease pathogenesis will enable robust therapeutic... -
Plasmids for Endogenous Gene Tagging in Human Cells
TypeBlog Post...use electroporation, a technique that briefly destabilizes the cell’s outer membrane and allows the components...structures and processes and can lead to the better understanding of cell biology. We hope that these high-quality... -
Educational Planarian Tools for Teaching Developmental Biology Techniques
TypeBlog Post.... The last step involves a chemical reaction to stain the cells that contain this mRNA-riboprobe-antibody.../79/3/208 2. Fire, S. Xu, M.K. Montgomery, S.A. Kostas, S.E. Driver, C.C. Mello. Potent and specific genetic... -
Hot Plasmids and Viral Preps - March 2021
TypeBlog Post...vivo studies should always take DNA’s chromatin status into account (Fig 1a). The laboratory of Karmella...dCas9 expression and contain different antibiotic resistance markers. New CRISPR pooled library from Keith... -
Synthetic promoter AAVs for cell-type specific expression in retinal cells
TypeBlog Post...Create promoters with sequences upstream of the start codon of retinal cell-type specific genes from mice...synthetic promoters. Legend: TSS: transcription start site. TFBS: transcription factor binding site. Image... -
Plasmids 101: FLEx Vectors
TypeBlog Post...considered "Cre-On" meaning that your gene of interest starts in the inverse/antisense "off" position and is ...employed for "Cre-off" (i.e. your gene of interest starts in the sense orientation and Cre is used to flip... -
Fluorescent Tagging of Endogenous Genes with SapTrap
TypeBlog Post...light up endogenous genes of interest to better understand normal protein function. However, CRISPR protein...introduced directly into a Drosophila S2 cell line stably expressing Cas9. This PCR toolkit offers C- and... -
PRIDICT: Predicting Efficiencies of Prime Editing Guide RNAs
TypeBlog Post...et al., 2024) have highlighted how chromatin substantially affects prime editing outcomes across many genomic...with PRIDICT/PRIDICT2.0, ePRIDICT can help you understand how chromatin might influence editing results... -
AAVs CREATed for Gene Delivery to the CNS and PNS
TypeBlog Post...CNS and PNS! What is the CREATE method? CREATE stands for Cre Recombinase-based AAV Targeted Evolution...number of neurons overall (GFP+ cells that also stained for a neuronal marker). Check out tables 1 and ... -
MXS Chaining
TypeBlog Post... (MCS). Modules are assembled one at a time by standard restriction enzyme digestion followed by ligation...Goler JA, Arkin AP, et al. BglBricks: A flexible standard for biological part assembly. Journal of biological...