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TypeBlog Post...the site. Like Labguru, Quartzy offers software designed with scientists workflow in mind and can offer...
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Plasmid Cloning by Restriction Enzyme Digest (with Protocols)
TypeProtocol...restriction enzyme digest (subcloning), including design and experimental procedures....easily move YGOI into a mammalian expression vector. Design (Choosing enzymes) Many DNA analysis tools, including..., but do not cut within your insert Are in the desired location in your recipient plasmid (usually in ...your recipient plasmid as well as a specifically designed test digest later to verify that the insert was... fear. You have other options, such as: Adding desired restriction sites to flank your insert : You can...restriction enzymes that cut within your insert. Adding desired restriction sites to your recipient plasmid : You... orientation of your insert, so you may want to design a diagnostic digest for this purpose. Congratulations... -
Isolating a Monoclonal Cell Population by Limiting Dilution
TypeProtocol...Vector Guides Virus Blog Posts Addgene Protocols Viral Service Introduction This protocol describes how ...This protocol describes how to generate a monoclonal cell line from a polyclonal pool of stable cells...type will be able to grow under the conditions described in this protocol. Conditioned medium (details ... specific conditions used. Each 96-well plate described in this protocol could, in theory, give rise to...protocol was performed at Addgene on the A549 cells described in our sample data , each 96-well plate gave rise...from Feng Zhang (Addgene plasmid #52962 ) and is described in Improved vectors and genome-wide libraries ... -
Droplet Digital PCR for AAV Quantitation
TypeBlog Post... to a new plate containing the mastermix which includes primers and a ddPCR supermix. Note that the supermix... -
Minigenomes - a Safe Way to Study Dangerous Viruses Like the Ebola Virus
TypeBlog Post...minigenome system Minigenome systems, such as the one described here, are extremely useful research tools. In ... -
Tips for Screening with Yeast Two Hybrid Systems
TypeBlog Post...activation. Including a prey-only control also provides a baseline level of reporter activation. Vary ... -
Negotiating Work and Life: How to Find the Joy
TypeBlog Post...that extra two miles which is way more fun. And despite those who may wish to tell you so – towel corners... -
Ligation Independent Cloning
TypeProtocol...experimental design. Search Addgene's collection of empty LIC cloning vectors Protocol Step 1: Design Your Primers... Primers Primer design for LIC is often as simple as using the backbone manufacturer's suggested leader...primer is shown here. Note: Use web-based primer design software to ensure a melting temperature between...nucleotide dGTP in the reaction (exclude all other nucleotides from standard polymerase protocol), causing the...manufacturer. It is very important to remove all free nucleotides from your PCR product before proceeding, as they... -
Transferable Skills Guide: External Collaborations
TypeBlog Post...collaborators than you realize. Being at a university provides the perfect platform for practicing initiative... -
Four Base Editing Reporters to Monitor and Enrich Editing in Real-time
TypeBlog Post... plasmid delivery to a cell. In contrast, TREE provides a read out for plasmid delivery and subsequent... -
How to Be an Excellent Trainee
TypeBlog Post...will identify a ‘scientific mentor’: someone who provides career advice and offers direction on your scientific... -
CRISPR 101: Any Base Transversion Editors
TypeBlog Post...an abasic site. Like in most other base editor designs, the Cas9 nicks the non-edited strand to encourage... -
Advanced Uses of Cre-lox and Flp-FRT - A Neuroscientist’s View
TypeBlog Post... this re-inversion issue. It became possible to design FLEx vectors (Flip-excision vectors) that only ... -
Plasmid Cloning by PCR (with Protocols)
TypeProtocol...plasmid of interest. For this example, we will describe how to copy a cDNA from one vector into a new ...(YGOI) for ligation into a recipient plasmid. Designing Primers for PCR Based Cloning The basic PCR primers...that: Do not cut within your insert. Are in the desired location in your recipient plasmid (usually in ...examine the DNA sequence that we want to amplify and design primers that will bind to and replicate it. The...ends of the ORF and how these are used for primer design: Because we are cloning an ORF, we want to clone...TAAGCAGAATTCATGTGGCATATCTCGAAGTAC-3'. For the Reverse Primer, the design is similar, but we need to use the reverse complement... -
Western Blot
TypeProtocol...This protocol describes the basic steps for lysing cells, determining total protein concentration in ...specific to the protein of interest. This protocol describes the basic steps for lysing cells, determining ...continue running the gel until you have obtained the desired separation. Gently open the gel with the spatula...Device. Close the lid of the device. Select the desired method and make sure the parameters are correct... incubation Dilute the primary antibody to the desired concentration in blocking buffer. Pro-Tip The optimal...peroxidase-conjugated secondary antibody to the desired concentration in blocking buffer. Pro-Tip The optimal... -
Protocol - How to Perform Sequence Analysis
TypeProtocol...primer should be a minimum of 50 nucleotides and a maximum of 300 nucleotides from your target. Are there ...Analysis of a Plasmid You may also like... How to Design a Primer Diagnostic Restriction Digest Introduction...If you require additional sequencing and need to design a custom primer, Addgene recommends using Addgene's...'s sequencing results as a reference for primer design. A good sequencing reaction will produce between... -
Water Bath Protocol
TypeProtocol... of bacteria or fungi. There are disinfectants designed to be used in water baths with instructions on...bath on and set the appropriate temperature as described in your protocol. How to set the temperature will...Set up your water bath so that it will reach the desired temperature by the time you need it for your experiment...water bath to prevent evaporation and maintain the desired temperature. This also helps the water bath heat...water bath even if you are using disinfectants as described above in step 3. You will also need to maintain... -
Five Popular Model Organisms
TypeBlog Post...difficult and time consuming. GAL4/UAS was first described in 1993 by Norbert Perrimon’s lab and has been... -
Transferable Skills Guide: Conflict Resolution
TypeBlog Post...even better. The Thomas Kilmann Conflict Model describes 5 basic approaches to conflict resolution based... -
Quick Guide to Near-Infrared Fluorescent Proteins
TypeBlog Post...Biol 24, 758-766 e753 (2017). Baloban, M. et al. Designing brighter near-infrared fluorescent proteins: insights...