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TypeBlog Post...Mike Lacy In order to study the conformational dynamics of the motor protein kinesin-1, the Twelvetrees...single-molecule FRET to study the intramolecular dynamics of the proteins in solution and when associated...
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Fluorescent Proteins 101: Visualizing Subcellular Structures & Organelles
TypeBlog Post...to your organelle of interest. Click on the gene names in the figure below to find plasmids containing ...Ruusuvuori, Pekka, et al. "Quantitative analysis of dynamic association in live biological fluorescent samples... -
Fluorescent Proteins 101: Fluorescent Protein Timers
TypeBlog Post...protein timers FP timers have been used to: Monitor dynamics of vesicle fusion and release from the plasma ...overtime (Subach et al.) Monitor protein expression dynamics in a synthetic circuit (Saxena et al.) In a general... -
Antibodies 101: Flow Compensation
TypeBlog Post...compensate between them. Another rule of thumb is if the names of the fluorescent markers are similar, you will...Chart. Pro tip! Some antibodies go by different names depending on your flow cytometer’s setup. For instance... -
PhD Applications After COVID
TypeBlog Post...program. Most applications will recommend that you name two professors in your application that you intend...reference your questions about the PI’s research or the name of the award you won for your conference presentation... -
When is a Monomer not a Monomer? The Top Three Ways Your Favorite Fluorescent Protein Oligomerizes in Cells
TypeBlog Post...applications of FPs is to visualize the localization, dynamics, and behavior of a POI. As an investigator, you...Membrane proteins fused to FPs that dimerize can form dynamic contacts that bring apposing membranes together... -
AAVs in Retinal Gene Therapy
TypeBlog Post...recessive, severe, childhood-onset form of blindness name Leber’s Congenital Amaurosis (LCA). Shortly after...vectors to support trials for prevalent diseases - to name a few. CRISPR-based tools are also particularly... -
An Introduction to Adenovirus
TypeBlog Post...Kafri et al., 1998). In fact, adenovirus gets its name because it was first isolated from human adenoid...targeted cells is less likely for adenoviral vectors – namely due to the removal of certain adenoviral genes ... -
Tips for arabidopsis transformation
TypeBlog Post...from studying transcriptional and translational dynamics of genes and proteins in living plants, to complementing... plant selection markers (basta, hygromycin, kananamycin, tunicamycin) (Nakagawa et al., 2007). Alternatively... -
Tips from the Repository Trenches: Using Barcodes to Track Samples
TypeBlog Post...majority of plasmids contain either an ampicillin or kanamycin resistance gene. Every step along the way involves...the container holding the tubes and use this ID to name the corresponding Excel sheet.3. Be specific - ... -
Fluorescent Proteins 101: Green Fluorescent Protein (GFP)
TypeBlog Post...green portion of the visible spectrum (hence the name), which is due to a chromophore formed from a maturation...expressed in living cells, enabling the study of dynamic, physiological processes. Re-engineering GFP to... -
Rett Syndrome: A History of Research and Therapeutic Outlooks
TypeBlog Post... mouse model for a human neurological disease (Sinnamon et al., 2020). They introduced a mouse MECP2 guide....org/content/92/15_Supplement/S51.002.abstract Sinnamon JR, Kim SY, Fisk JR, Song Z, Nakai H, Jeng S, ... -
An Inside Look into Addgene's Dev Team
TypeBlog Post... Another area of maintenance is agreeing to the names of the things in our code. In some parts of our ...When this happens, we discuss and agree on a common name. While we do our best to write clean, reusable code... -
Bioinformatics at Addgene
TypeBlog Post...we specified a select small number of input file names or filtered the input channel to only use the first...process printed one of the inputs, such as the file name. We started small with a print statement and tested... -
Hot Plasmids - November 2023
TypeBlog Post....531939. Qin, W., Cheah, J.S., et al. (2023). Dynamic mapping of proteome trafficking within and between...provides a unique new way to record and quantify the dynamics of promoter activity in single cells. Find iPAK4... -
Harnessing TnpB for Genome Editing: A Compact and Versatile Tool for Your Research
TypeBlog Post...Institute. When it comes to genome editing, CRISPR is a name that resonates with nearly every biologist, academic...resistance gene as the plant-selectable marker and a kanamycin resistance gene for bacterial selection. The process... -
CRISPR 101: Any Base Transversion Editors
TypeBlog Post...track of which acronym is which. Acronym Full name Notes Base transition Base change between purines...same protein (or its homologs) has more than one name. Indel Insertion/deletion A type of unwanted DNA... -
How to Write a Scientific Review Article
TypeBlog Post...also recommend using the citation style of (Last name, Year) in the document while writing, because it...to whatever the journal requires. Using the (Last name, Year) format also has the benefit of exposing you... -
Neuronal labeling with Spaghetti Monster
TypeBlog Post...experiments crucial to studying neuronal circuits and dynamics. FPs are generally bright, stable and well tolerated...fluorescently-labeled antibodies. The “spaghetti monster” name is a reference to the deity of the social movement... -
Plasmids 101: E. coli Strains for Protein Expression
TypeBlog Post... General protein expression m15 pREP4*, ** Kanamycin (pREP4) Cis-repression of the E. coli T5 promoter...strains carry the DE3 lysogen, as indicated by the name of the strain. Conversely, other strains such as...