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We narrowed to 849 results for: NTS

Showing: 221 - 240 of 849 results

  1. Mobile-CRISPRi: Bringing CRISPRi to Diverse Bacteria

    Type
    Blog Post
    Published
    April 4, 2019, 12:53 p.m.
    ...generations. Figure 1: Mobile-CRISPRi's modular components. Image from Peters et al., 2019 with permission...using the bacterial integrative and conjugative elements in Bacillus subtilis (ICEBs1) system. ICEBs1 carries... Top: A Tn7 transposon containing the CRISPRi components and a plasmid with the Tn7 transposition genes...lacking DAP select against donor bacteria and for recipients with an integrated copy of CRISPRi. Bottom: An... An ICE element containing the CRISPRi components is transferred to recipient bacteria by bi-parental ...suited for genome-wide CRISPRi library screening experiments where maintaining library diversity is important...rates are only suited for single-gene knockdown experiments. Mobile-CRISPRi applications Mobile-CRISPRi expands...

  2. 10 Basic tips for mammalian cell culture

    Type
    Blog Post
    Published
    July 12, 2018, 1:09 p.m.
    ...contamination free environment for successful experiments: To clean air and beyond Turn on the hood for...wipes) before and after your work. Keep your contaminants away While it’s likely that you’re the main ...main source of contamination for your experiments, the bright side is that you also have the power to take...aerosols that may enter the hood. Planning your experiments thoroughly before entering the hood is another...microscope will help you identify bacterial and yeast contaminants. Set up a routine to split cells Don’t be lazy...rendering their continued use inadvisable for experiments requiring reproducible results. Most cell culture...should not be used for important transfection experiments right after they’ve been thawed. Additional passages...

  3. 3D Printing Meets CRISPR Cas9

    Type
    Blog Post
    Published
    Oct. 17, 2017, 12:55 p.m.
    ...introduce their students to this otherwise invisible molecular world. For the students, the models force...hand-deliver the model, the following sequence of events plays itself out: The researcher breaks eye-contact...membrane of the endoplasmic reticulum. And graduate students, momentarily forgetting that the physical model...Subscribe to CRISPR Blog Posts How do educators and students use molecular models?   We created the Center ...instances of focused attention become magical teaching moments. The models function as thinking tools – eliciting... Team modeling program in which small teams of students work closely with local researchers to learn about... designed to make the molecular world real for students. Many thanks to our guest blogger Tim Herman!...

  4. Plasmids 101: Multicistronic Vectors

    Type
    Blog Post
    Published
    Sept. 9, 2014, 8:20 p.m.
    ... mutually exclusive elements. Labs have successfully utilized 2A and IRES elements within the same multicistronic...for research purposes are described below. IRES Elements Translation in eukaryotes usually begins at the...translation initiation independent of the 5’ cap.  IRES elements are very useful and commonly found in bicistronic...however, they do have some disadvantages. These elements are quite large (500-600 bp) and may take up precious...express more than two genes at a time using IRES elements. Further, scientists have reported lower expression...features and spend more time developing the clever experiments and innovative solutions necessary for advancing...ITAMs ensures effective negative selection and prevents autoimmunity. Holst et al (Nat Immunol. 2008 Jun...

  5. Which Fluorescent Protein Should I Use?

    Type
    Blog Post
    Published
    May 20, 2014, 2:06 p.m.
    ...colors and 10 points to keep in mind when choosing an FP (or two) for your upcoming experiments. Fluorescence...FPs just keeps getting larger with hundreds of variants available. Read on to familiarize yourself with...emission wavelenght range).  By mutating GFP, the variants blue FP (BFP), cyan FP (CFP), and yellow FP (YFP...YFP) were derived. For a breakdown of GFP, it's variants, and their relevant mutations, check out Marcy's...Bimolecular Fluorescence Complementation (BiFC). 8 points to keep in mind when choosing a fluorescent protein...you are planning to express the FP in acidic environments (e.g. yeast cytosol, which is slightly acidic...with very comprehensive data sheets on many FP variants Plasmids 101: Green Fluorescent Protein (GFP) ...

  6. Great Results Start with Great Standard Curves

    Type
    Blog Post
    Published
    Aug. 15, 2024, 1:15 p.m.
    ...sample is pure and free of any contaminants that could affect the measurements. You'll need to prepare the... or very similar buffers if not, since buffer components can affect the final readout. When preparing ...duplicate or triplicate. The closeness of the data points generated by replicate values provides useful information...diluted standard is plotted against its OD560 measurements and the trendline y = 0.6561x + 0.019 calculated...predicate values and measures how well the data points fit the trendline. R2 ranges from 0 to 1 with 1...approaches the minimum and maximum thresholds. If the measurements for the unknown sample fall outside of the dynamic... to set yourself up for success!  Study the instruments and specific assays you will be using ahead of...

  7. Plasmids 101: Choosing an Antibiotic Resistance Gene

    Type
    Blog Post
    Published
    Oct. 10, 2023, 1 p.m.
    ...in high pH environments and is less susceptible to degradation in agar plates. This prevents satellite ...less stable at high temperatures and in acidic environments.   Carbenicillin   Carbenicillin, colloquially...genomes. If you need a plasmid that can go between plants and bacteria, it’s a great option! Otherwise, since...eukaryotic cell culture, yeast, bacteria, and even plants! The zeocin resistance gene is present in bacteria...et al). Thus, it may not be a good choice for experiments in which off-target mutations are undesirable..."Check icon" %} Zeocin Excellent No Bacteria, plants, and eukaryotes Not Tn5-containing cells {% icon...temperature and pH on the stability of antimicrobial agents in MIC trays. Journal of Clinical Microbiology,...

  8. Plasmid Preps: Different Purity, Different Quantities, Different Uses

    Type
    Blog Post
    Published
    June 16, 2020, 1:25 p.m.
    ...(genomic DNA and RNA), proteins and chemical contaminants that have been used during the purification ... indicators of DNA purity are the absorbance measurements at 230, 260, and  280 nm. The absorbance ratios...scientists an indication of purity versus protein contaminants. The 260 and 230 nm ratios should fall ~2 - ...provide an indication of purity versus chaotropic agents as guanidine thiocyanate and guanidine hydrochloride...extraction of enough plasmid to last for multiple experiments. Another fundamental aspect for transfection ... being free of any nucleic acid and chemical contaminants, these DNA samples must also be entirely endotoxin...ultimately affects the quality and outcomes of experiments. For these reasons commercially available kits...

  9. Hot Plasmids - August 2020

    Type
    Blog Post
    Published
    Aug. 18, 2020, 1:15 p.m.
    ...directed evolution approach with some notable improvements. Directed evolution techniques mimic natural...utility of the system for use with low affinity variants of TEV. The new system has been demonstrated to...the evolution platform to generate TEV protease variants. Catalysis by TEV protease allows a transcription...fluorescent tools for labeling structures and compartments in mammalian cells By Angela Abitua Genetically...are often used to label  specific structures, compartments, or specific localization of biomolecules within...plasmids at Addgene The MoClo CRISPR/Cas Toolkit for plants includes 95 plasmids consisting of CRISPR/Cas nucleases... allow for sensitive and high spatiotemporal measurements of norepinephrine. These norepinephrine sensors...

  10. Binning Singletons: Tackling Conference Networking When You Don’t Know Anyone

    Type
    Blog Post
    Published
    Feb. 18, 2020, 2:15 p.m.
    ...similar situations to themselves, allowed the participants to feel more comfortable at a large meeting....They really liked us.  The testimonials from participants in Binning Singletons at ASM Microbe in 2019...people to talk to and attend sessions with.” These sentiments were echoed in the other testimonies we gathered...people to do in the pilot. We also found that all participants would benefit from more structure with regard...assistance than others, but we did have some participants feel like their mentors weren’t as invested ...expectations have been established for future participants regarding the activities and time mentors spend...Binningsingletons.com will be the hub for all our events, tips, and more. We are partnering with ASM and...

  11. Plasmids 101: Gateway Cloning

    Type
    Blog Post
    Published
    Jan. 12, 2017, 3:30 p.m.
    ...multiple DNA fragments into many vectors at once in the same tube. You can clone up to 4 DNA fragments, in a .... Universality All types of DNA fragments may be cloned: PCR fragments, cDNA or Genomic DNA and is available...reaction creates an expression clone with all of the components necessary for gene expression.     The LR...important to include the proper protein expression elements (ribosome recognition sequences, start codon, ...transfect the cells that you want to use for your experiments and verify that your construct is functional....recombination; ccdB gene for negative selection; elements to express the gene of interest in the appropriate...

  12. pCXLE toolkit: Efficient episomal plasmid-based method to reprogram peripheral blood cells to iPSCs

    Type
    Blog Post
    Published
    Dec. 14, 2017, 2:08 p.m.
    ...major benefit when recruiting patients, specifically children and patients with skin disorders for research...larger number of willing participants. While fibroblasts obtained from aged patients are reprogrammed less...iPSCs: Blood is easily and routinely drawn from patients in contrast to the process of collecting fibroblasts...correlation has been found between the age of the patients from whom the blood is obtained and the subsequent...reprogramming factors behave as separate extrachromosomal elements in the nucleus of the target cell. The method ...-associated clonal T cell proliferation in two patients after gene therapy for SCID-X1. Science, 2003....

  13. Tips for Writing a Good Cover Letter

    Type
    Blog Post
    Published
    May 21, 2024, 1:30 p.m.
    ...how your skills and experience match the job requirements, by giving specific examples of your work and...the hiring manager knows that you can design experiments with ddPCR, interpret the results, and develop...in your cover letter, start by looking at the requirements in the job description. For each requirement... explain how your experience matches the job requirements, and address any unusual circumstances or proactively...candidate’s skills and experiences fit the job requirements, strengthened an application. Even so, there... cover letters can be a barrier for qualified applicants. In short, while a cover letter can’t replace...Personalize your cover letter to the job and job requirements. It’s okay to start from a standard version,...

  14. Changing Labor Laws Bring Increased Postdoc Wages

    Type
    Blog Post
    Published
    Oct. 25, 2016, 2:30 p.m.
    ...such as adjuncts) and graduate and undergraduate students are exempted from the law. However postdocs, staff... effects on higher ed had been seized upon by opponents of the ruling. However when the ruling was issued...Overtime Rules, made clear that institutional arguments were not as convincing as the recommendations ... therefore the numbers of postdocs at different points on this salary range. We have been able to gather...the institutions that are meeting the salary requirements of the FLSA. In the University of California...get rid of postdocs; that current postdoctoral appointments may shorten in length; that postdoc salaries...accept these recommendations, and make gradual adjustments towards this new level. Indeed some institutions...

  15. Getting the Most from Your Lentiviral Transduction

    Type
    Blog Post
    Published
    April 7, 2016, 2:30 p.m.
    ...important binding events take place during the course of infection. These binding events can be impaired...the most out of your lentiviral transduction experiments. Love your cells and they'll love you back ... problem that often plagues labs and hinders experiments is mycoplasma contamination. Mycoplasma contamination...cloudy. Mycoplasma compete with host cells for nutrients and can alter expression of receptors, ion channels...collect and pool the harvests from multiple time points while others opt for a single harvest after transfecting...of infection (MOI) for predicting gene transfer events.” Genetic Vaccines and Therapy 2.1 (2004) Pubmed...Titering Your Lentivirus Learn All About Viral Vector Elements Learn How to Do Genome-Wide Screens with CRISPR...

  16. Data Freedom: The Expansion of Data Sharing in Research Publications

    Type
    Blog Post
    Published
    Aug. 5, 2014, 6:51 p.m.
    ...some types of research, raw data requires huge amounts of storage. For example, mouse behavioral geneticists...different occasions via video, generating huge amounts of data. When published, this data is usually condensed... of data is essential for efficient science. Improvements in our discipline for annotation and archiving...not finalized its definition of necessary data requirements and likely will not do so (calling it a “sisyphean...another issue of proprietary data formats. Many instruments store raw data in formats that require specific... and Dataverse. Just as Addgene helps with DNA reagents, these resources can offload the burden of data...rely on many other labs to teach us how to do experiments and understand their data. Likewise, we want ...

  17. "What Makes a Good Mentor?" and 6 More FAQs About Science Mentoring

    Type
    Blog Post
    Published
    Dec. 17, 2013, 2:47 p.m.
    ...chat for Early Career Researchers.  Many of the participants had certainly realized the importance of seeking...What makes a good Mentor?” Some of the Tweeted comments: “A good mentor has your goals/needs/situation...most of them Is not threatened by the Mentee’s talents or ambitions Encourages the Mentee to take risks...thoughtful treatise on the kind of advisor/mentor she wants to be for her new lab. If only every science trainee...their career. “I want to be a PI that holds my students accountable for their actions and pushes them ...without being taken advantage of, and to respect my students as developing colleagues even as I reinforce the...the necessary power dynamic between advisor and students.” Stay tuned for the answers to the other six ...

  18. Supporting Rare Disease Research with BeHeard 2017

    Type
    Blog Post
    Published
    July 20, 2017, 2:30 p.m.
    ...Their small numbers do not, however, make these patients suffer any less acutely.  The Rare Genomics Institute...those who suffer from rare diseases by connecting patients to important resources and promoting research ...disease. This year, Addgene will be providing plasmid grants worth $2,000 each to two labs through the BeHEARD...accelerate rare disease research and provide hope to patients suffering from these devastating afflictions. ...motor neuron function in spinal muscular atrophy patients. Noushin Nabavi - Peritoneal Mesothelioma  Noushin...mesothelioma, there are currently no targeted treatments for peritoneal mesothelioma. Dr. Nabavi and colleagues... lines and assess their tumorigenesis. These experiments will serve to validate these candidate genes ...

  19. pSiM24: Simplifying Plant Genetic Engineering

    Type
    Blog Post
    Published
    Sept. 29, 2015, 2:30 p.m.
    ...As previous blogs have noted, plants are an important foundation for life on Earth. Selective breeding...breeding methods have shaped the plants that we grow and eat, and genetic engineering will continue to improve...transient and stable gene expression applications in plants. This smaller, easily customizable vector functions...biolistic methods, making it useful for engineering plants that are not susceptible to Agrobacterium infection...select both transformed Agrobacterium and infected plants. Further opportunities with pSiM24 While these ..., three MCS regions permit multiple regulatory elements to be inserted, further customizing gene expression...as well as stable expression of foreign genes in plants." PLoS one 9.6 (2014): e98988. Pubmed PMID: 24897541...

  20. 9 Tips to Achieve Success in Academia

    Type
    Blog Post
    Published
    April 1, 2014, 5:33 p.m.
    ...first in a series that will feature advice for students, postdocs, and young Principal Investigators (...alerts for new papers with keywords or a Table of Contents email (eTOC) alert for every new issue of your...careers outside of academia Recently, graduate students and postdocs have become more aware of careers...all the real life skills that employers love PhD students to have: working to deadlines, writing up clear...their personal goals to their career choices.” She points out that a PhD teaches analytical and critical ...outside of academia. She has had previous graduate students and postdocs go on to work in patent law, business... Your Lab,” “Fun in the Lab!" and more.   Acknowledgments Thank you again to Connie Cepko, Tom Ellis...
Showing: 221 - 240 of 849 results