We narrowed to 883 results for: FER

...lead to wildly different ideas of how to approach a problem, but it is these very differences that make our...the software design. Each of us brings slightly different cognitive biases as a result of our diversity ...Addgene and ourselves. We are also able to consider different technical approaches that may come up during discussion...developer and I get to see an approach that is likely different from what I would have done. And finally the stakeholder...isn’t how we work. We all take turns working on different parts of the code. I think the best way to learn...shipping sprint and all the stories will touch different parts of the shipping code. The following sprint...every part of the software, we are able to get different perspectives on how things are implemented and...

...Bioluminescence Resonance Energy Transfer CRET= Chemiluminescence Resonance Energy Transfer    Interesting Articles...FRET, aka Fluorescence (Förster) Resonance Energy Transfer, technique which allows the detection of molecules...distance-dependent physical process by which energy is transferred non-radiatively from an excited molecular fluorophore...FRET experiments. You may have to design several different constructs to find one that could be used for ...higher than the signal generated by the energy transfer. On the contrary, if you choose a pair that are...cross-talk but you also don’t have any resonance transfer. You have to find a balance between FRET efficiency...RB, Periasamy A. Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein...

...made it possible to offer DayCon as a free event! Organizing a science conference for the public How ...first-time event called DayCon. DayCon is a one-day conference aimed at the general public that provides an ...graduate student at Harvard, who wanted to provide a conference-style experience that was accessible to the general...How does one organize a public scientific conference? As a member of the DayCon Executive Board, I was fortunate...strength in the biomedical sciences and decided to offer a varied format event to keep the audience engaged... make DayCon a yearly event and to expand the conference to accommodate a larger number of attendees. ...

...written by Jennifer Tsang in October 2019 and updated by Emily P. Bentley in December 2024. References and ...(Anzalone et al., 2019). Plus, it can combine different types of edits with one another. All of this is...editing window cannot edit within what Fyodor Urnov refers to as “PAM deserts” in the genome. More versatile... instances where traditional base editors are preferred. For instance, if target nucleotides are positioned...type, and goal of the experiment can all impose different constraints and affect how you select and design...5.1-fold (though up to 45-fold) higher across different genomic sites compared to PE1 (Anzalone et al....used with any of the PE2-5 approaches, sometimes referred to as PE2max, PE3max, etc. PE6: Specialized prime...

...is to offer plasmids created as part of research projects, another way is to systematically offer thousands...worked closely with the legal partners and Tech Transfer Offices at universities to make COVID-19 research-related...United States, and many universities and Technology Transfer Offices were, at least, temporarily closing, these...scientists, we’ve worked with many scientists, tech transfer offices, research foundations, and funding initiatives...them available to industry, please reach out at techtransfer@addgene.org and we will initiate a conversation...conversation with you and your technology transfer office to discuss the possibilities for expanded sharing. ...

...by Addgenie Rebecca Hutcheson.   References and resources References Banasik, M. B., & McCray, P. B., ...second-generation system as an example.  The lentiviral transfer plasmid encodes your insert of interest, flanked...then, numerous variants have been developed with different mechanisms to inactivate the integrase.  The IDLV...vectors is random, and the integration site will be different for each transduced cell, there’s no telling which... that of regular lentiviral vectors. The only difference is that you would use the integrase-deficient...that titering these IDLVs may require a slightly different protocol than regular lentiviral vectors. This...quantifying the integrated viral DNA along with a reference cellular gene. When titering IDLVs, there is no...

..., protected samples and was compatible with the buffer additive MgCl2 and the crosslinking agent glutaraldehyde...PEs) via engineered virus-like particles (eVLPs) offers an option to transduce cells directly with ribonucleoprotein...editor consisting of dCas9 fused to a DNA methyltransferase — that can drive lasting transcriptional silencing...Histone tail for Autoinhibition Release of Methyltransferase (CHARM), with several advantages over the ...  Rather than overexpressing an exogenous methyltransferase for epigenetic silencing, which can be toxic...tail to recruit and stimulate the endogenous methyltransferase. The strategy is generalizable to a variety...D3L recruits the endogenous, autoinhibited methyltransferase DNMT3A to the genomic location specified by...

...sensors with different ITAM/SH2 reporter pairs allow multiplexed measurement of different RTKs. Although...response. They generated variants optimized for different applications (v82 has higher affinity for glutamate...Measuring local temperature variations and heat transfer at the subcellular level requires a probe with...By fusing two bright fluorescent proteins with different thermal quenching rates (mNeonGreen and tdTomato...sub-millisecond resolution and sub-degree temperature differences under a variety of imaging conditions (155 μs...fast measurement of temperature and local heat transfer. Image reproduced from Lu et al. 2022, under CC-BY-NC-ND...plasmids here!   Lu K, et al. Intracellular Heat Transfer and Thermal Property Revealed by Kilohertz Temperature...

...solubility, and thus different reagents are useful for biotinylation in different microenvironments. There...used today in molecular biology for an array of different techniques and protocols. In this post we will...and decarboxylases. These enzymes catalyze the transfer of carboxyl groups to organic acids to produce...relatively small, water soluble molecule that does not interfere with the macromolecules it is added to. Biotin... signal and easier detection. This strategy is referred to as the Avidin-Biotin Complex (ABC) immunohistochemistry...variety of biotinylation reagents available that differ in the functional groups or residues they target...a solid substrate (Holden and Cremer, 2003). References 1. Chapman-Smith, A., & Cronan, J. E. “Molecular...

...Addgene, I was about to have a check-in with my boss Jennifer. I had finally found my footing with the company... for what we thought would be a couple months. Jennifer and I spent about an hour that morning scrambling... involved multiple people in tight locations. Conference rooms for on-screen presenters! Labs and benches...know cameras, but we needed someone else. Design: Jennifer thankfully volunteered, and we decided to focus...action would be to use an iPad to shoot.  Build: Jennifer created a mobile camera area that included iPad...Zoom, everyone’s new favorite third-party video conferencing software. Interviewees could simply boot up ...while the camera is here, the operator is in a different room.   Design: The previous cycle made me...

...scientists have developed and fine tuned many different ways to clone DNA fragments which have provided...more and more common, and for good reason. They offer many advantages over the traditional restriction...with an enzyme master mix, which contains three different enzymes: an exonuclease, which chews back the... this doesn’t allow for mix and match of many different fragments. One way around this is to use a combination...kit you will be using. Some of these products may offer advantages that Gibson assembly does not such as...with a G!) but actually work by significantly different methods. Golden Gate cloning does result in the...from one vector to another. There are lots of different ways to clone these days. Gibson and the other...

...are communicating across disciplines or doing different tasks. But these challenges can be exaggerated...equal opportunity to contribute. Using video conferencing tools like Zoom or Google Hangouts is a great...great way to include researchers from different locations. Having virtual face-to-face meetings as opposed... collaboration includes scientists working in different time zones, it’s important that everyone can access...project at the International Cancer Immunotherapy Conference in Frankfurt, Germany When funding and circumstances...techniques are being performed the same way at different sites. I did a lab exchange as part of the collaboration...been able to do from my home lab. Scientific conferences and workshops are another great place to meet...

...system which has been designed to perform gene transfer in vertebrates. The system is comprised of 2 components...transposase has been discovered in the genomes of many different fish species in a variety of non-functional forms...the lab showed that efficiencies of stable gene transfer using SB100x were comparable to stable transduction... vectors were developed into 16 variants with different selection markers (blasticidin, neomycin, puromycin... each contain two SfiI restriction sites with different overhangs depending upon whether they are on the...only likely to grow in the coming decades.  References 1. Kowarz E, et al. Optimized Sleeping Beauty... Beauty transposase enables robust stable gene transfer in vertebrates. Nat Genet. 2009 Jun;41(6):753-...

...out if you want to learn more. References and resources References Balloux, F., & van Dorp, L. (2017...called an envelope. Viruses without an envelope are referred to as naked or non-enveloped, while viruses with...viruses, here’s a quick tip on terminology. “Virus” refers to a single type of virus, not the individual viral...infection — researchers were able to create far safer viral vectors that can be used in BSL-1 or BSL-2...experimentally controlled conditions, making them far safer to work with than virions. The four types of viral...vectors (which many researchers will informally refer to as viruses) are named after the viruses they’...

...cells. The replicons of plasmids are generally different from the those used to replicate the host's chromosomal...include ColE1, pMB1 (which comes in a few slightly different but well known derivatives), pSC101, R6K, and ...regulated. Generally, control of replication is referred to as "relaxed" or "stringent" depending on whether...maintains about 20 copies per cell, while pUC – which differs by only two mutations – will produce as many as...considerations. *Requires pir gene for replication (reference). **F1 is a phage-derived ori that allows for...particles. Plasmids with phage-derived ori's are referred to as phagemids.   Other factors that affect...clarified? If so please, post in the comments.  References Chatterjee A, Sun SB, Furman JL, Xiao H, Schultz...

...of many complex cellular behaviors, such as differentiation or metabolism. Our attempts to manipulate these...cerevisiae with few techniques that are easily transferrable across host species or metabolic pathways. A...system for multidirectional control The CRISPR interference (CRISPRi) model consists of a catalytically .... cerevisiae by using three RNA programs to differentially alter the levels of five genes that encode ...sequentially rerouted the metabolic flux to generate differently pigmented derivatives of violacein. Using dCas9...that will still recognize guide RNA but with a different dCas9 binding module, alternative sets of transcriptional...pharmaceuticals. Follow him on Twitter @AdamChinFatt     References Qi, L. S. et al. Repurposing CRISPR as an RNA-guided...

...by Hannah Dotson in Dec. 2022.  References and Resources References Gossen M, Bujard H. Tight control...CMV, EF1A, and SV40, are always active and thus referred to as constitutive promoters. Others are only ...In the presence of tetracycline (Tet), TetR preferentially binds Tet over the TetO elements, allowing ...hear some transcription factor and promoter pairs referred to as binary systems. Binary systems are genetic... One can therefore place GAL4 and GAL80 under different promoters and create sophisticated patterns of...wondering, “why is it necessary to have all 3 of the different binary systems above if they all behave very similarly...s00253-018-9485-4. Epub 2018 Nov 3. PMID: 30392122. Pfeiffer, Barret D., et al. “Refinement of Tools for Targeted...

...For more context, exposition, and detail, please refer to the paper. Why might one be interested in state...register (Fig. 1C below). If attB-attP pairs from different recombinases are overlapping or nested on a register...that enters distinct states when treated with different combinations and orders of two recombinases. ...leveraging qPCR data from multiple primer pairs, one can infer the predominant state of registers within a sample...strong, directional terminators and promoters with buffer sequences on their 5’ and 3’ ends (for insulation... register. The purpose of this is to prevent interference between the transcribed gene and its 5’ UTR.... in biocomputing and biological circuits.     References 1. N. Roquet et al., Synthetic recombinase-based...

...they do arise. Happy CRISPR’ing! References and Resources   References Rabinowitz R, Offen D. Single-Base...cutting to occur. The RNA sequence and PAM site confer specificity of the nuclease; however, many Cas ...effects should impact your experimental design differently. Yes, it is always better to reduce off-target...mutation, off-targets must be quantified slightly differently. For a comprehensive approach, RNA-seq would ...to control for off targets as well as clonal differences. If you are performing CRISPR library screens... as a transfection or transduction control, a different gRNA would have distinct off-target sites, eliminating... there really aren’t any effective off-target reference controls. Off-targets and your experiment Every...

...activation p300 acetyltransferase dCas9 fused to the catalytic domain of p300 acetyltransferase increases levels...transcription, also includes light-regulated histone methyltransferases and deacetylases. CRISPR and epigenetics ...delivery systems. Transcriptional repression DNA Methyltransferase 3 Alpha (DNMT3A) Vlatka Zoldoš’ lab has deposited...repression. Created with BioRender.com. DNA Methyltransferase MQ1 Margaret Goodell's lab has deposited pcDNA3.1...Q147L)-EGFP, a fusion of dCas9 to a small DNA methyltransferase from the prokaryote Mollicutes spiroplasma...Schwiesow contributed to updating this article. References Haldeman JM, Conway AE, Arlotto ME, et al (2018... Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers...