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TypeBlog PostPublishedSept. 3, 2019, 1:15 p.m....available metagenomic datasets with biophysical studies and the potential of mining datasets for research and...Every few months we highlight a subset of the new plasmids in the repository through our hot plasmids...metagenomic data including the Tara Oceans Project datasets. This study demonstrates the power of combining...
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Using CRISPR/Cas9 to Edit Disease Out of the Genome
TypeBlog PostPublishedJune 23, 2022, 1:15 p.m....targeting the genes responsible for both early onset and late onset AD. In this study, the group showed that...connected to the early onset of Alzheimer’s disease, as well as those that play into late onset AD (5). ... -
CRISPR Methods for Bacteria: Genome Engineering, CRISPRa, CRISPRi, Base Editing, and More
TypeBlog PostPublishedSept. 28, 2020, noon...aTet-inducible gRNA and a backbone-targeting gRNA cassette for plasmid curing through "self-destruction" ... while pCRISPomyces-2 contains Cas9 and a gRNA cassette. The simpler system of pCRISPomyces-2 displays...). By cloning in two tandem copies of the gRNA cassette, one can reliably knockdown expression of multiple...such a purpose (Selle et al., 2020). Targeting a subset of bacteria in a population Work from the Lu lab...found early success using CRISPR-Cas to target subsets of bacteria in population based on the presence... -
Mouse Modeling, Part 1: Genetically Engineered Mice
TypeBlog PostPublishedJuly 11, 2019, 1:26 p.m.... of a stop cassette upstream of the target gene in the targeting vector. The stop cassette is floxed, ...conditional systems Conditional knockouts or knockins A subset of transgenic mice, conditional knockout/knockin...so Cre-mediated recombination deletes the stop cassette, which permits expression of the target gene. ... -
The Effect of COVID-19 on Liu Lab Plasmid Requests From Addgene Data
TypeBlog PostPublishedJuly 16, 2020, 1:15 p.m....unbiased data. Therefore, we chose to examine a dataset of Liu lab plasmid requests from Addgene, as a ... requests correlate with paper publication The dataset includes 11,426 plasmid requests over 6 years for...and 03/11/20 -- 05/19/20 (the last date in our dataset) for the U.S. and Europe. To improve the stability...China. An important additional caveat is that our dataset contains plasmid orders from just one lab, which... -
Quick, Versatile Plant Transgenesis with GreenGate Plasmids
TypeBlog PostPublishedJan. 23, 2014, 3:23 p.m.... frequently used elements in plant expression cassettes: plant promoters, N-terminal tags, coding sequences...C-terminal tags, plant terminators and resistance cassettes for selection of transgenic plants. The complete... gives the option to stack several expression cassettes onto a single T-DNA in subsequent rounds, dramatically... -
Embracing Serendipity: A Crucial Element in the PhD Journey
TypeBlog PostPublishedApril 25, 2024, 1:15 p.m....gain fresh perspectives. Such activities foster a mindset that embraces the unexpected and encourages exploration...Serendipity is not just a stroke of luck; it's a mindset that can lead to unexpected discoveries and innovative...serendipity into your research but also cultivate a mindset that is adaptable, creative, and poised for groundbreaking... -
Using AAV for Neuronal Tracing
TypeBlog PostPublishedAug. 9, 2018, 1:04 p.m..... In the specific example of episodic memory, a subset of hippocampal neurons projects axons directly ...tracing has the added benefit of only labelling the subset of infected cells that also express Cre. Another...AAV vectors. Conclusion An ideal comprehensive toolset for neuronal tracing and network identification...adeno-associated viral vector serotypes 1, 2, 5, 8 and 9 in marmoset, mouse and macaque cerebral cortex, Neurosci Res... -
AAV Q&A with Tim Miles
TypeBlog PostPublishedMay 17, 2022, 1:15 p.m....re-administration but I do not think the field has settled on ‘best practices’ for model organisms. Q11...expression is when injecting CAP-B10 or CAP-B22 in marmosets, from an individual to another individual perspective...CAP-B10 and CAP-B22 were tested individually in 4 marmosets each. Brain potency for each individual is reported... -
Multiplex Genome Editing with CRISPR-Cpf1
TypeBlog PostPublishedMay 9, 2017, 2:12 p.m....et al Multiplexed Lentiviral Expression Cassettes lentiviral transduction One vector expresses... own promoter Kabadi et al Csy4-Cleavable Cassettes transfection gRNAs expressed from a polycistronic...co-transfection of Cas9 Nissim et alTsai et al PTG Cassettes transfection gRNAs expressed from a polycistronic... -
Rett Syndrome: A History of Research and Therapeutic Outlooks
TypeBlog PostPublishedNov. 19, 2020, 2:15 p.m....in adult animal models results in rapid symptom onset, suggesting that MECP2 is also essential after development... gene was disrupted and silenced by a Lox-Stop cassette, resulting in the neurological deficits observed...Restoring the MECP2 gene by excision of the Stop cassette using tamoxifen-inducible Cre not only halted ... -
Deciphering the Mysteries of Behavior with Viral Vectors
TypeBlog PostPublishedSept. 17, 2019, 12:40 p.m.... activating chemogentic receptor (hM3Dq) into a subset of neurons within the LC of mice. When those neurons...harbouring a Cre-dependent IL-1 beta overexpression cassette. Expression of Cre in these neurons turns on overexpression...further and showed that the activity of a particular subset of excitatory neurons (Drd1) in mPFC is responsible... -
Supporting Reproducibility with a Connected ELN
TypeBlog PostPublishedJan. 17, 2019, 1:38 p.m....and deposit individual documents or more complex datasets into the desired repository. They also support...experiment documented in RSpace using the RSpace datasets deposited in Figshare or Dataverse has access ...electronic lab notebook. Rory is based in Cambridge, Massachusetts, and feels privileged to be part of the vibrant... -
Plasmids 101: Codon usage bias
TypeBlog PostPublishedSept. 27, 2018, 1:09 p.m.... an organism uses only a subset of codons, it only needs to produce a subset of charged tRNAs and therefore...increase their abundance. For example, the commercial Rosetta E. coli strains express a variety of tRNAs that... -
An Integrin Antibody Toolkit from IPI
TypeBlog PostPublishedMarch 28, 2024, 1:15 p.m....courtesy of IPI. IPI anti-integrin toolset IPI’s anti-integrin toolset comprises 26 recombinant antibodies... that bound an amino acid region displayed by a subset of the RGD-binding integrins containing the αV ... -
Evolution of Brainbow: Using Cre-lox for Multicolor Labeling of Neurons
TypeBlog PostPublishedApril 24, 2015, 2:39 p.m....translation-blocking STOP cassette immediately following the promoter. The STOP cassette includes a mutant YFP...eliminating two color possibilities. The remaining cassette can invert as long as Cre remains expressed; once... -
Cancer and the Immune System: Deciphering the Relationship
TypeBlog PostPublishedMarch 14, 2017, 2:30 p.m....responses to viral infections have resulted in the onset of cancer. Similar patterns of cancer development...inflammatory bowel disease is associated with the onset of colorectal cancer. Strategic immune evasion mechanisms...cytotoxic effector T cells, and targeting specific DC subsets in vivo using specific antigens to activate them... -
Addgene's Top Blog Posts from 2020
TypeBlog PostPublishedDec. 29, 2020, 2:15 p.m....Experiments by Jennifer Tsang Chromoproteins are a subset of the fluorescent protein family and they generate...molecular biology tools out there! Here, we highlight a subset of these tools for plasmid mapping, DNA/protein... -
Who Gives a Tweet? 9 Facts About Scientists on Twitter
TypeBlog PostPublishedJune 26, 2017, 1:31 p.m.... in the dataset; 2) users not part of a scientific Twitter list were excluded from the dataset. 3. 60%... -
CRISPR 101: Drug discovery and CRISPR
TypeBlog PostPublishedMay 4, 2023, 1 p.m.... (a specific mutation in a known gene = disease onset) may be best served by this type of targeted design...hits’ - genes that affect disease progression or onset. These hits can reveal individual genes or sometimes...