...interneurons under the control of the E2 regulatory element Viral manipulation of functionally distinct interneurons...calcium sensors for imaging activity in neuronal populations and microcompartments. Nat Methods. 2019 Jul;...GCaMP6f Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron... enhancer A viral strategy for targeting and manipulating interneurons across vertebrate species. Nat ...) Improved methods for marking active neuron populations. Nat Commun. 2018 Oct 25;9(1):4440. Eric Schreiter...ER-targeted CEPIA1er ER-mitochondria tethering by PDZD8 regulates Ca(2+) dynamics in mammalian neurons. Science....sensitivity Sensitive genetically encoded sensors for population and subcellular imaging of cAMP in vivo. Nat ...

... cell culture. Five years later, PubMed lists more than 6,300 CRISPR-related publications, many of which...specific, programmable platform well-suited for various biological and translational technologies. Biotechnology... a target gene. On the other hand, if a repair template with homology arms was supplied, the break could...could be repaired according to this template, allowing for precise gene editing. These edits can include...convert adenosine to inosine on RNA. Inosine is translated as guanosine, so the overall effect is an A->...to transcriptional activators or repressors can modulate transcription in a reversible manner. Epigenetics...Epigenetics : dCas9 fused to epigenetic modifiers can modulate transcriptions and create heritable epigenetic...

...including histone acetylation/demethylation, and cytosine methylation/demethylation....include: histone acetylation by p300 histone demethylation by LSD1 cytosine methylation by DNMT3A or MQ1...Cut Base Edit Nick Prime Edit Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting ...MQ1 cytosine demethylation by Tet1 These modifications persist over time and are potentially heritable...

...cells several days later, and isolating genomic DNA. This DNA is then used as a template to amplify a portion...Next-generation sequencing is performed on viral genomes isolated from the final AAV preparation. Sequencing results...of AAV preparations is assayed by comparing the relative stoichiometric ratios of the viral capsid proteins...SYPRO Ruby staining and the molecular weight and relative intensity of the viral capsid proteins are analyzed...Viral capsid proteins VP1, VP2, and VP3 are shown relative to the total protein present in the sample. Sterility...are added to cells in culture. Three to five days later, cell cultures are inspected for sterility. Transducibility...-AAVrg) alone at 1.1E6 vg/mL, or both. Two days later, Cre-dependent GFP expression was detected with ...

...viral expression of molecular payloads in target populations defined by multiple parameters....expressing these tools in well-defined cellular sub-populations has generally been limited to single-component...viral expression of molecular payloads in target populations defined by multiple parameters. Figure 1: Examples...Examples of intersectional cell population definitions using recombinases. A) Cre and Flp are multiplexed... to enable intersectional viral targeting of populations expressing only Cre AND Flp, Cre NOT Flp, or ...recombinase-expression strategies to define cellular sub-populations of interest, including dual-transgenic recombinase-expressing... NOT Cre No Dual recombinase-dependent: Rabies-related Addgene ID Plasmid Logic Sites and Mutations In-Stock...

...available at Addgene. Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis (ALS), sometimes referred...individuals develop late-onset AD. There is no clear association between a gene and late-onset AD. It is ... between a person’s thirties and mid-sixties, or late-onset, where symptoms appear during or after a person's...APOE), such as the ε4 allele, are a risk factor for late-onset AD. Many more genes have been associated with...reporter to study tau seeding in mammalian cells. Lathuiliere et al. Mol Neurodegener. 2023 Aug 8. Study the...growing collection of general and neuroscience -related antibodies including: Anti-KChIP1 K+ channel [K55...high-volume hybridoma sequencing on the NeuroMabSeq platform. Mitchell et al. Sci Rep. 2023 Sep 27. See More...

...investigate the effect of regulatory elements, such as promoters, enhancers and untranslated regions, or the effect...mutations of these regulatory elements on gene expression. Empty backbones for inserting regulatory elements before...luciferase plasmids for assays of transcriptional regulation and bioluminescent reporters. Plasmid...luciferase gene.. TREAT (3( T hree)′- R NA E nd A ccumulation during T urnover) : Single-molecule mRNA turnover...Optimized STARR-seq ( S elf- T ranscribing A ctive R egulatory R egion) plasmids : Genome-wide screening of enhancer...cloning to test for the presence of transcriptional regulatory region in specific cell types. Used to identify...backbone plasmids into which you can clone your regulatory element or gene of interest into to create a ...

...Overview of tetracycline regulated inducible transcriptional activation or repression...Additional Resources: Browse Tetracycline Plasmids Tet-regulated Lentiviral RNAi Vectors Curated Plasmid Collections...promoter is reduced. To use tetracycline as a regulator of gene expression, a tetracycline-controlled ..., is a preferred effector for tetracycline transregulation. Dox binds with high affinity to tTA and rtTA...and Tet-On 3G transactivator, creating an auto-regulated Tet-On 3G System. Contains homology arms for integration...sites and EF1α promoter driving tTA; contains insulator sequence; plasmid pEnt L1L3 rtTA-3 is a rtTA version...cell transcription factor fusion derivatives, regulates inducible gene expression in mammalian cells. ...

...plasmids related to metabolic pathways and auxiliary components. Networks and Gene Regulation Browse plasmids...Lab Biopixels Jaramillo Lab Riboregulation Keasling Lab BglBrick Platform , Terpenoid Production , and...Category Cloning and Genomic Tools Browse plasmids related to cloning and genomic modification, including ...containing both naturally occurring and synthetic regulatory elements, including promoters, terminators, repressors...networks. Sensing and Signaling Browse plasmids related to intercellular signaling and environmental sensing...Plasmids and Phagemids Balazsi Lab Negative Autoregulation and Yeast-Mammalian Circuit Transfer C. Collins...

...the knowledge and understanding of COVID-19 and related coronaviruses. To assist with this effort Addgene...plasmids available that may be useful for COVID-19 related research. Additionally, we have linked to collections...articles, protocols, and other resource collections related to COVID-19 that may be of use to scientists. Background...Description Industry PI Due to export control regulations, MERS and SARS-CoV materials are available only...entry of SARS-CoV and SARS-CoV-2. Find plasmids related to these genes below. ID Plasmid Description Industry... in the body. For a full list of cytokines and related plasmids see our Immunology Resource Guide . Return...and DETECTR - Simple, portable, and inexpensive platforms to reliably detect nucleic acids at the atomolar...

...Technologies and Methods for Targeted Neuronal Manipulation Meeting Date September 21, 2018 Contact Us Questions...molecular tools to achieve targeted neuronal manipulation (aka intersectional control). The end result...Serotype specificity, AAV dosing, and Other Forms of Regulation Ben Deverman 2:00 PM Cre-DOG and Combinatorial...and how it can be used for targeted neuronal manipulation. Topics may include: How this technology is ...is used for targeted neuronal manipulation. Practical tips for using the technology in the lab (e.g., controls...big picture of methods for targeted neuronal manipulation? Best practices for using this techonology in...presenting on) is used to achieve targeted neuronal manipulation. Figures, tables, data, or images on best practices...

...changes, researchers use ssDNA or dsDNA repair templates with homology to the DNA flanking the DSB and ...edit close to the gRNA PAM site. When a repair template is present, the cell may repair a DSB using homology-directed...Cut Base Edit Nick Prime Edit Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting ...Nickase mutants can also be used with a repair template to introduce specific edits via homology-directed...primer binding site and the desired edits on an RT template. ID Plasmid Gene/Insert Promoter PI Publication... to direct the dCas9-activator to promoter or regulatory regions of your gene of interest. If the plasmid...the spread of infection throughout the entire population. ID Plasmid Promoter PI Publication Purify A ...

...and constitutively expressing Cas9 knockin mice (Platt et al ., Cell 2014). In these mice the CRISPR-Cas9...luciferase-2A-Cre recombinase, and Kras G12D HDR template 60225 : control for AAV-KPL; sgRNA targeted to...expression vectors for cancer modeling Using Cas9 mice, Platt et al . simultaneously modeled the dynamics of KRAS...contains a Kras G12D homology directed repair donor template. #60225 - AAV:ITR-U6-sgRNA(LacZ)-pEFS-Rluc-2A-...to enable the rapid ligation of annealed and phosphorylated oligos designed based on the target site sequence...for genome editing in the brain Using Cas9 mice Platt et al. demonstrated in vivo genome editing in the...

...sequence (not shown). (B) Relative GFP and RFP concentration given relatively to the non‐targeting spacer...the Bikard Lab, CRISPR plasmid collection for modulating expression levels of two targets independently...has deposited a collection of CRISPR arrays to modulate the expression levels of two targets independently...sb400021j Figure 1: Multiplexing CRISPR knockdown to modulate expression of two genes without cross‐talk. (A... a single cell, and each color represents the population obtained with one CRISPR plasmid. An overlaid... connects the median values of the different populations. Image and caption from Vigouroux et al., 2018...

...estrogen-related receptor alpha ESRRB Plasmids ESRRB, DFNB35, ERR2, ERRb, ESRL2, NR3B2 estrogen-related receptor...receptors are a class of transcription factors modulated by ligands. Two of the important regions of nuclear...Plasmids ESRRG, ERR3, ERRgamma, NR3B3 estrogen-related receptor gamma HNF4A Plasmids HNF4A, RP5-1013A22.1...MGC119326, MGC119329, RZR-ALPHA, DKFZp686M2414 RAR-related orphan receptor A RORB Plasmids RORB, NR1F2, ROR-BETA...ROR-BETA, RZR-BETA, RZRB, bA133M9.1 RAR-related orphan receptor B RORC Plasmids RORC, RP11-98D18.11-001...001, NR1F3, RORG, RZR-GAMMA, RZRG, TOR RAR-related orphan receptor C RXRA Plasmids RXRA, NR2B1 retinoid...

...advantage of this system is tight temporal regulation. Promoter-regulated Cre: The promoter region defines the...Mammalian Green 8405 p240 pPr-CREM/Ins CREM with insulators probasin Mammalian Green 8406 p252 pPr-CREM/CMV-STOP-luc... CREM and CMV-STOP-luc cassette, separated by insulator probasin Mammalian Green 11543 pPGK-Cre-bpA Cre... metallothionein MT-I region including the polyadenylation site and several introns tet-hCMV Mammalian...floxed) Constructs These constructs allow for Cre-regulated gene expression. Depending on the construct, Cre...Genes A and B. When Cre is absent, only Gene A is translated correctly. Cre expression excises Gene A and ...and alters the reading frame to allow in-frame translation of Gene B. FLEx Switch ∗ : This system allows...

...Cut Base Edit Nick Prime Edit Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting ...changes, researchers use ssDNA or dsDNA repair templates with homology to the DNA flanking the DSB and ...edit close to the gRNA PAM site. When a repair template is present, the cell may repair a DSB using homology-directed...Nickase mutants can also be used with a repair template to introduce specific edits via homology-directed...primer binding site and the desired edits on an RT template. ID Plasmid Gene/Insert Promoter Selectable Marker... to direct the dCas9-activator to promoter or regulatory regions of your gene of interest. If the plasmid...none S. pyogenes Kamoun 52255 pUC119-gRNA U6 PCR template none S. pyogenes Sheen 51295 pRGEB31 rice snoRNA...

...enChIP-MS - A putative role of HDX as a negative regulator. Hamidian A, Vaapil M, von Stedingk K, Fujita ...ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5...srep30485. PubMed . Efficient sequence-specific isolation of DNA fragments and chromatin by in vitro enChIP....0116579. eCollection 2015. PubMed . Efficient isolation of specific genomic regions retaining molecular...10.1371/journal.pone.0103084. PubMed . Efficient isolation of specific genomic regions and identification.../srep03171. PubMed . Direct identification of insulator components by insertional chromatin immunoprecipitation...Insertional chromatin immunoprecipitation: a method for isolating specific genomic regions. Hoshino A, Fujii H. ...

...Cut Base Edit Nick Prime Edit Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting ... for genetic screening experiments, due to the relative ease of designing gRNAs and the ability to modify...are treated with the pooled library to create a population of mutant cells that are then screened for a ...3rd 10 187,535 Advanced Catalogue of Epigenetic Regulators (ACER) 226117 Knockout Human Lu 3rd 10 8,205 ...3rd 4 2,852 Bonifacino Lab Human ubiquitination-related proteins CRISPR KO library 174592 Knockout Human...Knockout Mouse Tolar 3rd ~4 78,637 Mouse Chromatin Regulator Library 200011 Knockout Mouse Griffin, Manguso...Knockout Human Yusa 3rd 5 90,709 Human Interferon-Stimulated Gene CRISPR Knockout Library 125753 Knockout ...

...multiple cell types, but are typically limited to related cell lineages. Pluripotent embryonic and multipotent...technology removes the possible ethical concerns related to embryonic stem cell use and has the major advantage...to generate iPSCs. The generation of iPSCs is relatively simple in concept: ectopically express a cocktail...BRD3R promotes human nuclear reprogramming and regulates mitosis. Nat Commun. 2016 Mar 7;7:10869. Hu CRISPRa...polycistronic cassettes KLF4 N-terminal variance modulates induced reprogramming to pluripotency. Stem Cell...from human pluripotent stem cells via temporal modulation of canonical Wnt signaling. Proc Natl Acad Sci... conversion from human fibroblasts using self-regulating and nonintegrating viral vectors. Stem Cell Reports...