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pMSP1E3D1 Citations (51)

Originally described in: Cooperativity in cytochrome P450 3A4: linkages in substrate binding, spin state, uncoupling, and product formation.
Denisov IG, Baas BJ, Grinkova YV, Sligar SG J Biol Chem. 2007 Mar 9. 282(10):7066-76.
PubMed Journal

Articles Citing pMSP1E3D1

Polyprotein context regulates the activity of poliovirus 2CATPase bound to bilayer nanodiscs. Springer CL, Huntoon HP, Peersen OB. J Virol. 2013 May;87(10):5994-6004. doi: 10.1128/JVI.03491-12. Epub 2013 Mar 20. PubMed
Preparation and characterization of SNARE-containing nanodiscs and direct study of cargo release through fusion pores. Shi L, Howan K, Shen QT, Wang YJ, Rothman JE, Pincet F. Nat Protoc. 2013 May;8(5):935-48. doi: 10.1038/nprot.2013.048. Epub 2013 Apr 18. PubMed
Probing the structure of the mechanosensitive channel of small conductance in lipid bilayers with pulsed electron-electron double resonance. Ward R, Pliotas C, Branigan E, Hacker C, Rasmussen A, Hagelueken G, Booth IR, Miller S, Lucocq J, Naismith JH, Schiemann O. Biophys J. 2014 Feb 18;106(4):834-42. doi: 10.1016/j.bpj.2014.01.008. PubMed
Solid-state NMR of the Yersinia pestis outer membrane protein Ail in lipid bilayer nanodiscs sedimented by ultracentrifugation. Ding Y, Fujimoto LM, Yao Y, Marassi FM. J Biomol NMR. 2015 Apr;61(3-4):275-86. doi: 10.1007/s10858-014-9893-4. Epub 2015 Jan 13. PubMed
Phage display selections for affinity reagents to membrane proteins in nanodiscs. Dominik PK, Kossiakoff AA. Methods Enzymol. 2015;557:219-45. doi: 10.1016/bs.mie.2014.12.032. Epub 2015 Mar 24. PubMed
Conformational Chaperones for Structural Studies of Membrane Proteins Using Antibody Phage Display with Nanodiscs. Dominik PK, Borowska MT, Dalmas O, Kim SS, Perozo E, Keenan RJ, Kossiakoff AA. Structure. 2016 Feb 2;24(2):300-9. doi: 10.1016/j.str.2015.11.014. Epub 2015 Dec 31. PubMed
Protonation Dynamics on Lipid Nanodiscs: Influence of the Membrane Surface Area and External Buffers. Xu L, Ojemyr LN, Bergstrand J, Brzezinski P, Widengren J. Biophys J. 2016 May 10;110(9):1993-2003. doi: 10.1016/j.bpj.2016.03.035. PubMed
Structure of Nanodisc Reconstituted Vacuolar ATPase Proton Channel: Definition of the Interaction of Rotor and Stator and Implications for Enzyme Regulation by Reversible Dissociation. Stam NJ, Wilkens S. J Biol Chem. 2016 Dec 13. pii: jbc.M116.766790. PubMed
Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer. Adhikary S, Deredge DJ, Nagarajan A, Forrest LR, Wintrode PL, Singh SK. Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):E1786-E1795. doi: 10.1073/pnas.1613293114. Epub 2017 Feb 21. PubMed
Biolayer interferometry of lipid nanodisc-reconstituted yeast vacuolar H+ -ATPase. Sharma S, Wilkens S. Protein Sci. 2017 May;26(5):1070-1079. doi: 10.1002/pro.3143. Epub 2017 Mar 12. PubMed
Crystal structure and dynamics of a lipid-induced potential desensitized-state of a pentameric ligand-gated channel. Basak S, Schmandt N, Gicheru Y, Chakrapani S. Elife. 2017 Mar 6;6. pii: e23886. doi: 10.7554/eLife.23886. PubMed
Method to Visualize and Analyze Membrane Interacting Proteins by Transmission Electron Microscopy. B Kumar R, Zhu L, Hebert H, Jegerschold C. J Vis Exp. 2017 Mar 5;(121). doi: 10.3791/55148. PubMed
H2S oxidation by nanodisc-embedded human sulfide quinone oxidoreductase. Landry AP, Ballou DP, Banerjee R. J Biol Chem. 2017 Jul 14;292(28):11641-11649. doi: 10.1074/jbc.M117.788547. Epub 2017 May 16. PubMed
Modulation of protein function in membrane mimetics: Characterization of P. denitrificans cNOR in nanodiscs or liposomes. Ter Beek J, Kahle M, Adelroth P. Biochim Biophys Acta. 2017 Jun 28;1859(10):1951-1961. doi: 10.1016/j.bbamem.2017.06.017. PubMed
Visualization of ligand-induced transmembrane signaling in the full-length human insulin receptor. Gutmann T, Kim KH, Grzybek M, Walz T, Coskun U. J Cell Biol. 2018 May 7;217(5):1643-1649. doi: 10.1083/jcb.201711047. Epub 2018 Feb 16. PubMed
High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane. Srivastava AP, Luo M, Zhou W, Symersky J, Bai D, Chambers MG, Faraldo-Gomez JD, Liao M, Mueller DM. Science. 2018 May 11;360(6389). pii: science.aas9699. doi: 10.1126/science.aas9699. Epub 2018 Apr 12. PubMed
Impact of the lipid bilayer on energy transfer kinetics in the photosynthetic protein LH2. Ogren JI, Tong AL, Gordon SC, Chenu A, Lu Y, Blankenship RE, Cao J, Schlau-Cohen GS. Chem Sci. 2018 Feb 9;9(12):3095-3104. doi: 10.1039/c7sc04814a. eCollection 2018 Mar 28. PubMed
Structural basis for activation of voltage sensor domains in an ion channel TPC1. Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM. Proc Natl Acad Sci U S A. 2018 Sep 25;115(39):E9095-E9104. doi: 10.1073/pnas.1805651115. Epub 2018 Sep 6. PubMed
G-Protein Coupled Receptor Protein Synthesis on a Lipid Bilayer Using a Reconstituted Cell-Free Protein Synthesis System. Gessesse B, Nagaike T, Nagata K, Shimizu Y, Ueda T. Life (Basel). 2018 Nov 2;8(4). pii: life8040054. doi: 10.3390/life8040054. PubMed
Chemical Additives Enable Native Mass Spectrometry Measurement of Membrane Protein Oligomeric State within Intact Nanodiscs. Keener JE, Zambrano DE, Zhang G, Zak CK, Reid DJ, Deodhar BS, Pemberton JE, Prell JS, Marty MT. J Am Chem Soc. 2019 Jan 16;141(2):1054-1061. doi: 10.1021/jacs.8b11529. Epub 2019 Jan 7. PubMed
Identification of a Molecular Latch that Regulates Staphylococcal Virulence. Xie Q, Zhao A, Jeffrey PD, Kim MK, Bassler BL, Stone HA, Novick RP, Muir TW. Cell Chem Biol. 2019 Apr 18;26(4):548-558.e4. doi: 10.1016/j.chembiol.2019.01.006. Epub 2019 Feb 14. PubMed
Local membrane charge regulates beta2 adrenergic receptor coupling to Gi3. Strohman MJ, Maeda S, Hilger D, Masureel M, Du Y, Kobilka BK. Nat Commun. 2019 May 20;10(1):2234. doi: 10.1038/s41467-019-10108-0. PubMed
Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase. Ro SY, Schachner LF, Koo CW, Purohit R, Remis JP, Kenney GE, Liauw BW, Thomas PM, Patrie SM, Kelleher NL, Rosenzweig AC. Nat Commun. 2019 Jun 17;10(1):2675. doi: 10.1038/s41467-019-10590-6. PubMed
Structure of the Mechanosensitive Channel MscS Embedded in the Membrane Bilayer. Rasmussen T, Flegler VJ, Rasmussen A, Bottcher B. J Mol Biol. 2019 Aug 9;431(17):3081-3090. doi: 10.1016/j.jmb.2019.07.006. Epub 2019 Jul 7. PubMed
Cryo-EM structures and functional characterization of murine Slc26a9 reveal mechanism of uncoupled chloride transport. Walter JD, Sawicka M, Dutzler R. Elife. 2019 Jul 24;8. pii: 46986. doi: 10.7554/eLife.46986. PubMed
Functional importance of the oligomer formation of the cyanobacterial H(+) pump Gloeobacter rhodopsin. Iizuka A, Kajimoto K, Fujisawa T, Tsukamoto T, Aizawa T, Kamo N, Jung KH, Unno M, Demura M, Kikukawa T. Sci Rep. 2019 Jul 24;9(1):10711. doi: 10.1038/s41598-019-47178-5. PubMed
A Catalytic Trisulfide in Human Sulfide Quinone Oxidoreductase Catalyzes Coenzyme A Persulfide Synthesis and Inhibits Butyrate Oxidation. Landry AP, Moon S, Kim H, Yadav PK, Guha A, Cho US, Banerjee R. Cell Chem Biol. 2019 Nov 21;26(11):1515-1525.e4. doi: 10.1016/j.chembiol.2019.09.010. Epub 2019 Oct 4. PubMed
DHHC20 Palmitoyl-Transferase Reshapes the Membrane to Foster Catalysis. Stix R, Song J, Banerjee A, Faraldo-Gomez JD. Biophys J. 2019 Nov 14. pii: S0006-3495(19)30908-7. doi: 10.1016/j.bpj.2019.11.003. PubMed
Molecular basis of force-from-lipids gating in the mechanosensitive channel MscS. Reddy B, Bavi N, Lu A, Park Y, Perozo E. Elife. 2019 Dec 27;8. pii: 50486. doi: 10.7554/eLife.50486. PubMed
Mechanisms of activation and desensitization of full-length glycine receptor in lipid nanodiscs. Kumar A, Basak S, Rao S, Gicheru Y, Mayer ML, Sansom MSP, Chakrapani S. Nat Commun. 2020 Jul 27;11(1):3752. doi: 10.1038/s41467-020-17364-5. PubMed
Real-time identification of two substrate-binding intermediates for the light-driven sodium pump rhodopsin. Kato T, Tsukamoto T, Demura M, Kikukawa T. J Biol Chem. 2021 Jan-Jun;296:100792. doi: 10.1016/j.jbc.2021.100792. Epub 2021 May 18. PubMed
Recombinant expression and purification of pentameric ligand-gated ion channels for Cryo-EM structural studies. Kumar A, Basak S, Chakrapani S. Methods Enzymol. 2021;652:81-103. doi: 10.1016/bs.mie.2021.01.022. Epub 2021 Feb 16. PubMed
Cooperative binding ensures the obligatory melibiose/Na+ cotransport in MelB. Hariharan P, Guan L. J Gen Physiol. 2021 Aug 2;153(8). pii: 212278. doi: 10.1085/jgp.202012710. Epub 2021 Jun 10. PubMed
TXNIP interaction with GLUT1 depends on PI(4,5)P2. Dykstra H, LaRose C, Fisk C, Waldhart A, Meng X, Zhao G, Wu N. Biochim Biophys Acta Biomembr. 2021 Dec 1;1863(12):183757. doi: 10.1016/j.bbamem.2021.183757. Epub 2021 Aug 31. PubMed
Molecular mechanism of SbmA, a promiscuous transporter exploited by antimicrobial peptides. Ghilarov D, Inaba-Inoue S, Stepien P, Qu F, Michalczyk E, Pakosz Z, Nomura N, Ogasawara S, Walker GC, Rebuffat S, Iwata S, Heddle JG, Beis K. Sci Adv. 2021 Sep 10;7(37):eabj5363. doi: 10.1126/sciadv.abj5363. Epub 2021 Sep 8. PubMed
Point-localized, site-specific membrane potential optical recording by single fluorescent nanodiscs. Grupi A, Shapira Z, Yudovich S, Degani-Katzav N, Weiss S. Biophys Rep (N Y). 2021 Sep 8;1(1):None. doi: 10.1016/j.bpr.2021.100007. PubMed
Rapid preparation of nanodiscs for biophysical studies. Julien JA, Fernandez MG, Brandmier KM, Del Mundo JT, Bator CM, Loftus LA, Gomez EW, Gomez ED, Glover KJ. Arch Biochem Biophys. 2021 Nov 15;712:109051. doi: 10.1016/ Epub 2021 Oct 2. PubMed
Conformational changes in the yeast mitochondrial ABC transporter Atm1 during the transport cycle. Ellinghaus TL, Marcellino T, Srinivasan V, Lill R, Kuhlbrandt W. Sci Adv. 2021 Dec 24;7(52):eabk2392. doi: 10.1126/sciadv.abk2392. Epub 2021 Dec 22. PubMed
Reconstitution of purified membrane protein dimers in lipid nanodiscs with defined stoichiometry and orientation using a split GFP tether. Bruguera ES, Mahoney JP, Weis WI. J Biol Chem. 2022 Jan 21:101628. doi: 10.1016/j.jbc.2022.101628. PubMed

Associated Plasmids

Molecular Basis for the Cation Selectivity of Salmonella typhimurium Melibiose Permease. Katsube S, Liang R, Amin A, Hariharan P, Guan L. J Mol Biol. 2022 Jun 30;434(12):167598. doi: 10.1016/j.jmb.2022.167598. Epub 2022 Apr 22. PubMed
Investigating the Lipid Selectivity of Membrane Proteins in Heterogeneous Nanodiscs. Keener JE, Jayasekera HS, Marty MT. Anal Chem. 2022 Jun 14;94(23):8497-8505. doi: 10.1021/acs.analchem.2c01488. Epub 2022 May 27. PubMed
Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs. Kumar A, Kindig K, Rao S, Zaki AM, Basak S, Sansom MSP, Biggin PC, Chakrapani S. Nat Commun. 2022 Aug 18;13(1):4862. doi: 10.1038/s41467-022-32594-5. PubMed
Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation. Petroff JT 2nd, Dietzen NM, Santiago-McRae E, Deng B, Washington MS, Chen LJ, Trent Moreland K, Deng Z, Rau M, Fitzpatrick JAJ, Yuan P, Joseph TT, Henin J, Brannigan G, Cheng WWL. Nat Commun. 2022 Nov 17;13(1):7017. doi: 10.1038/s41467-022-34813-5. PubMed
Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM. Lee HJ, Cha HJ, Jeong H, Lee SN, Lee CW, Kim M, Yoo J, Woo JS. Nat Commun. 2023 Feb 18;14(1):931. doi: 10.1038/s41467-023-36593-y. PubMed
Cryo-EM structures of an LRRC8 chimera with native functional properties reveal heptameric assembly. Takahashi H, Yamada T, Denton JS, Strange K, Karakas E. Elife. 2023 Mar 10;12:e82431. doi: 10.7554/eLife.82431. PubMed
Anomalous Oligomerization Behavior of E. coli Aquaporin Z in Detergent and in Nanodiscs. Surya W, Yong CPY, Tyagi A, Bhushan S, Torres J. Int J Mol Sci. 2023 Apr 30;24(9):8098. doi: 10.3390/ijms24098098. PubMed
Mobile barrier mechanisms for Na(+)-coupled symport in an MFS sugar transporter. Hariharan P, Shi Y, Katsube S, Willibal K, Burrows ND, Mitchell P, Bakhtiiari A, Stanfield S, Pardon E, Kaback HR, Liang R, Steyaert J, Viner R, Guan L. bioRxiv [Preprint]. 2023 Nov 25:2023.09.18.558283. doi: 10.1101/2023.09.18.558283. PubMed
Online Buffer Exchange Enables Automated Membrane Protein Analysis by Native Mass Spectrometry. Liu W, Jayasekera HS, Sanders JD, Zhang G, Viner R, Marty MT. Anal Chem. 2023 Nov 28;95(47):17212-17219. doi: 10.1021/acs.analchem.3c02164. Epub 2023 Nov 14. PubMed
The GET insertase exhibits conformational plasticity and induces membrane thinning. McDowell MA, Heimes M, Enkavi G, Farkas A, Saar D, Wild K, Schwappach B, Vattulainen I, Sinning I. Nat Commun. 2023 Nov 14;14(1):7355. doi: 10.1038/s41467-023-42867-2. PubMed
Synaptotagmin-7 outperforms synaptotagmin-1 to promote the formation of large, stable fusion pores via robust membrane penetration. Courtney KC, Mandal T, Mehta N, Wu L, Li Y, Das D, Cui Q, Chapman ER. Nat Commun. 2023 Nov 27;14(1):7761. doi: 10.1038/s41467-023-42497-8. PubMed

Associated Plasmids

CRAFTing Delivery of Membrane Proteins into Protocells using Nanodiscs. Stepien P, Swiatek S, Robles MYY, Markiewicz-Mizera J, Balakrishnan D, Inaba-Inoue S, De Vries AH, Beis K, Marrink SJ, Heddle JG. ACS Appl Mater Interfaces. 2023 Nov 28;15(49):56689-701. doi: 10.1021/acsami.3c11894. PubMed

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