We narrowed to 82 results for: zebrafish
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TypeBlog Post...development. Why have zebrafish become such a popular model organism? Zebrafish (Figure 1) were initially...biology that arose from zebrafish-based investigations. Genetic resources for zebrafish A common approach ...implemented in zebrafish. Developmental biology insights using lineage tracing in zebrafish To highlight...control this process. Additional zebrafish applications and conclusions Zebrafish are also popular outside of...Friedrich Miescher Lab of the Max Planck Society. Zebrafish (Danio rerio) have been used since the 1930’s ...maintain. Also in contrast to mice, the transparent zebrafish embryo develops outside of the mother, making ...embryogenesis. To illustrate some of the reasons that zebrafish have been embraced as a model organism, I’ll outline...
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Zebrafish as a Model for Behavior: Swimming into the Optogenetic Spotlight
TypeBlog Post...et al., 2009). Zebrafish behaviors Several behavioral assays can be done on zebrafish at 5 days post ...a high degree of control over time and space. Zebrafish have become a popular model organism because their...well to studies of neuroscience. The larvae of zebrafish are translucent and allow for noninvasive live...short generation times and high fecundity, make zebrafish ideal for high throughput studies of optogenetics...optogenetics. Common opsins used in zebrafish Optogenetics functions through opsins which are light sensitive...to vertebrates and are commonly introduced in zebrafish through the UAS/Gal4 system for behavioral studies...by acoustic, visual or tactile stimuli, larval zebrafish react by performing a distinct C-bend to escape... -
Five Popular Model Organisms
TypeBlog Post...compounds in one experiment. Zebrafish (Danio rerio) Since the 1960s, the zebrafish has gradually become an...with a disease have a homolog in zebrafish (Howe et al., 2013). Zebrafish are small, easily maintained as...easily bred, and produce 50-300 eggs at a time. Zebrafish embryos are also laid and fertilized externally...their genomes or to create transgenic animals. Zebrafish are an ideal model organisms for embryonic development...differentiation of β-cells in the the developing zebrafish pancreas. They first tagged these cells using ...PMCID: PMC2736433. Howe, Kerstin, et al. "The zebrafish reference genome sequence and its relationship... -
Hot Plasmids Podcast Episode 2: New RFPs, AAVs, & More
TypeBlog Post...targeting the nervous system, and vectors for zebrafish engineering. You can find additional hot plasmids...Gateway-Compatible Toolbox for quickly generating zebrafish transgenic lines to study neurodegenerative diseases... -
Hot Plasmids - May 2022
TypeBlog Post..., generate a dedicated transgenic line. Using zebrafish as a model organism, the Parton Lab recently created..., termed BLITZ (Biotin Labeling In Transgenic Zebrafish) (Xiong, et al., 2021). Fig. 1: Schematic...be co-expressed in essentially any transgenic zebrafish line expressing a GFP-tagged version of a protein... BLITZ system was designed and optimized with zebrafish in mind, it can easily be applied to other systems... -
Photosensitizer Induced Cell Ablation with FAP-TAP MG-2I-dL5**
TypeBlog Post...cells. Zebrafish experiments with MG-2I-dL5** were performed with embryos and adult fish. Zebrafish are ...experimental settings: HEK293 cell culture and in live zebrafish. For cell culture experiments, only dL5**-expressing.... The video below shows what happens to the zebrafish’s heartbeat and blood circulation of following ... -
Multicolor Animals: Using Fluorescent Proteins to Understand Single Cell Behavior
TypeBlog Post...stage. Zebrabow, or “zebrafish brainbow,” is a collection of transgenic zebrafish lines that allow for...(Hadjieconomou et al., 2011). Cell tracing in zebrafish with Zebrabow Before the generation of Zebrabow...(Pan et al., 2011), Brainbow was also used in zebrafish by injecting a CMV-Brainbow construct at the embryonic...Albert, et al. "Multicolor Brainbow imaging in zebrafish." Cold Spring Harbor Protocols 2011.1 (2011): ... -
Evolution of Brainbow: Using Cre-lox for Multicolor Labeling of Neurons
TypeBlog Post...and lineage tracing in other systems, such as zebrafish and Drosophila. Why Brainbow? Brainbow highlights... study model organisms such as Drosophila and zebrafish. Brainbow in Drosophila has aided in the mapping...motor neurons and the neuromuscular junction. In zebrafish, the method has become very useful in lineage ...labeling for cell tracing and lineage analysis in zebrafish. Pan YA, Freundlich T, Weissman TA, Schoppik D... -
Sensing Neuronal Dopamine
TypeBlog Post...experiments The Li lab used GRABDA in drosophila, zebrafish, and mouse brain slices and freely moving mice...threatening looming stimulus in vivo in transgenic zebrafish Report DA release in live mice over the course... -
New Optogenetic Tools for Cytoskeleton and Membrane Control
TypeBlog Post...roles of three Rab proteins during a key stage of zebrafish development (Aljiboury et al., 2023). Rab family...be difficult to unravel their specific roles. Zebrafish are an excellent model for optogenetic studies...Rab35 coordinate lumen and cilia formation during zebrafish left-right organizer development. PLoS Genetics... -
Hot Plasmids - December 2019 - CRISPR pooled library, LipoGlo, CRISPRa, and Voltage Imaging Tools
TypeBlog Post...developed the LipoGlo system in zebrafish (Thierer et al, 2019). Zebrafish are a great model for high throughput... -
Hot Plasmids - March 2020 - base editors, GEVI, MoClo, and optogenetics
TypeBlog Post...CreLite for cell tracing using the transgenic zebrafish model, ubi:zebrabow. In this system, cells express...found in both deep and superficial tissues of zebrafish studied, such as the brain, eye, muscle and epithelial... -
FlipGFP, a novel fluorescence protease reporter to study apoptosis
TypeBlog Post...used FlipGFP to study apoptosis in HeLa cells, zebrafish embryos, and Drosophila. They treated HeLa cells..., a time consistent with previous methods. In zebrafish, the Shu Lab used FlipGFP to track the spatiotemporal... -
15 Hot Plasmids from 2017
TypeBlog Post...currently shared amongst the zebrafish community. Don E, et al. Zebrafish. 2017. PubMed PMID: 27631880...allow scientists to quickly and easily generate zebrafish transgenic lines to study neurobiology and neuorodgenerative...in ribonucleoprotein particles (RNPs) to both zebrafish embryos and the mouse inner ear. These exciting... -
CRISPR 101: Multiplex Expression of gRNAs
TypeBlog Post...systems, including E. coli, plants, Drosophila, and zebrafish! Why use multiplexed gRNAs? By expressing multiple...system, check out this blog post. Multiplexing in zebrafish Wenbiao Chen Lab Golden Gate Assembly Multiplex...These plasmids allow expression of 2-5 gRNAs in zebrafish. Custom destination vectors are used depending... -
Important Considerations in Optogenetics Behavioral Experiments
TypeBlog Post...other species such as non-human primates [7, 8], zebrafish [9], and c. elegans [10]. If used properly, optogenetics...Wyart. "Optogenetics: a new enlightenment age for zebrafish neurobiology." Developmental neurobiology 72.3... -
Our Most Popular Blog Posts from 2019
TypeBlog Post...five model organisms: mouse, fruit fly, yeast, zebrafish, and worm. 4. Early Career Researcher Toolbox... -
What's New in CRISPR - September 2019
TypeBlog Post...predicted to target sites in the human, pig, or zebrafish genome, this system can be used in these organisms... -
Chemogenetics vs. Optogenetics: Which Method Should I Choose?
TypeBlog Post...organisms with light accessible brains, such as zebrafish larvae. Mouse studies, however, require a permanent... -
Some Like it Hot: Thermostable GeoCas9
TypeBlog Post...mammalian cells, yeast, drosophila, plants, worms, zebrafish, frogs, some bacteria; but not thermophilic (high... -
HA Frankenbody, a New Imaging Tool to Visualize Single Molecules and Nascent Peptides
TypeBlog Post... to successfully track nuclei in a developing zebrafish embryo over an 80 minute time course. By stitching... -
Hot Plasmids: FRET-Based Biosensors
TypeBlog Post...be used in mouse, Drosophila, C. elegans, and zebrafish – essentially all of the standard organisms for... -
New Neuroscience Tool: The iGluSnFR3 Glutamate Sensor
TypeBlog Post...could detect neuronal activity in C. elegans, zebrafish, and mice. Second Generation iGluSnFR: SF-iGluSnFR... -
Hot Plasmids - March 2019 - Anti-CRISPR, 2in1 Cloning, Fluorescent Voltage Indicators, and Photoswitchable Proteins
TypeBlog Post...of animal models such as mice, C.elegans, and Zebrafish. Find Archon1 plasmids at Addgene! Piatkevich ... -
Viral Vectors 101: Calcium Sensors
TypeBlog Post...available for neuron-specific expression in both zebrafish and mammalian systems. The GCaMP6, jGCaMP7, and... -
Getting Started with Behavioral Neuroscience: Standardizing Experiments and Using Viral Vectors
TypeBlog Post...studies, though other organisms such as rats or zebrafish are also used. With the development of viral vectors... -
Educational Planarian Tools for Teaching Developmental Biology Techniques
TypeBlog Post...developmental models including flies, nematodes, and zebrafish Find plasmids for Mammalian RNAi ... -
Open Resources and Plasmid Tools For Studying C. elegans
TypeBlog Post...the worm community but there are Drosophila and zebrafish articles published there as well. Worm Development... -
Quickest Way to Deposit Plasmids: The Deposit Spreadsheet
TypeBlog Post... taurus (bovine), X. laevis (frog), D. rerio (zebrafish), D. melanogaster (fly), C. elegans (nematode)... -
Fluorescent Proteins 101: Visualizing Subcellular Structures & Organelles
TypeBlog Post.... You can also use the library of full-length zebrafish rab proteins from Rob Parton's Lab (University...