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  1. CRISPR/Cas9 FAQs Answered!

    Type
    Blog Post
    ... cells (for example, plasmid with a puromycin resistance cassette, such as PX459). After you co-transfect...
  2. DNA Quantification

    Type
    Protocol
    ...such as TE). You will get much more accurate and consistent readings from DNA in a buffered solution. Reference...
  3. Protocol - How to Design Primers

    Type
    Protocol
    ...Reaction Plasmid Cloning by PCR Agarose Gel Electrophoresis Primer Design for PCR Oligonucleotide primers...
  4. Ligation Independent Cloning

    Type
    Protocol
    ...linearized vector from the reaction mixture by gel electrophoresis followed by gel purification . The cut vector...
  5. Pipetting Protocol

    Type
    Protocol
    ...multiple “stops” on the plunger, where you feel resistance while pressing down on the pipette. Stop at the...
  6. Lentivirus ddPCR Titration

    Type
    Protocol
    ... Benzonase and harvest cells Day 4+: ddPCR and analysis Equipment Class II, Type A2 Biological Safety ...
  7. Molecular Biology Reference

    Type
    Guide
    ...antibiotic resistance and additional antibiotics, see our blog post on antibiotic resistance genes . Below...provide a benefit to the host, such as antibiotic resistance, and can be passed from one bacterium to another... restriction enzymes, DNA ligases, and gel electrophoresis enabled the movement of specific fragments ... origin of replication ( ori ), an antibiotic resistance gene, and at least one unique restriction enzyme...be copied (amplified) by bacteria. Antibiotic Resistance Gene Allows for selection of plasmid-containing...is typically in the form of another antibiotic resistance gene under the control of a non-bacterial promoter...very simple, often containing only a bacterial resistance gene, origin of replication, and an MCS. They...
  8. CRISPR Guide

    Type
    Guide
    ...including resistances to chemotherapy drugs and toxins, cell viability, and tumor metastasis. One of the...editing systems include targeted AID-mediated mutagenesis (TAM) and CRISPR-X , in which Cas9 is fused to...nsertion of T ransposable E lements by G uide R NA- A ssisted T argeting), developed by Samuel H. Sternberg’s...large scale edits. PASSIGE ( P rime- E diting- A ssisted S ite- S pecific I ntegrase G ene E diting), developed...desired phenotype. The ease of gRNA design and synthesis, as well as the ability to target almost any genomic...simplest dCas9-based activators and repressors consist of dCas9 fused directly to a single transcriptional...than other activators/repressors due to their persistence and heritability. Not all modifications are stable...
  9. Lentiviral Vector Guide

    Type
    Guide
    ...markers, such as the puromycin resistance gene, conferring antibiotic resistance to infected host cells. When...Gateway cassette containing the ccdB gene, a ccdB-resistant strain is necessary. For more information on cloning...led to the development of multiple genome-wide analysis pipelines to assess viral integration (see Kim...information encoded by that genome. Antibiotic resistance is not the only type of selectable marker. Fluorescent...replication-competent lentiviral vectors The potential for oncogenesis The potential for generation of replication-competent... of the full-length virus. The potential for oncogenesis is largely based on whether or not the specific... for oncogenes should be made on a case-by-case basis. As with most experiments, infection risks occur...
  10. Adeno-associated virus (AAV) Guide

    Type
    Guide
    ...material inside. The AAV genome is ~4.7 kb long and consists of two open reading frames, Rep and Cap, flanked...Gateway cassette containing the ccdB gene, a ccdB-resistant strain is necessary. For more information on cloning...episomes can develop chromatin-like organization and persist in non-dividing cells for a period of years without... eliminates the requirement for host cell DNA synthesis but further limits the packaging capacity of rAAV...immune response, and the low risk of insertional mutagenesis. Several AAV-based gene therapies have been approved...treatment of other major diseases such as cystic fibrosis and cancer. Neuronal Tracing Recombinant AAV vectors...chromosome, which reduces the risk of insertional mutagenesis. However, random integration events can occur...
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