...understand mechanisms and, eventually, develop treatments, we need tools to specifically edit methylation...original methylated strand is diluted to undetectable amounts: ergo, DNA demethylation! With optimization, this...Genome-wide tracking of dCas9-methyltransferase footprints. Nat Commun 9, 597. https://doi.org/10.1038/s41467...

...result to a reference sequence to confirm backbone elements.   Confirming the gene/insert by aligning to NCBI...origin of replication or other common backbone elements. Since we’ve successfully grown the plasmid in... about our sequencing results in the Depositor Comments section at the bottom of the plasmid page. Viral...

...Messina et al, 2016). We quickly assembled a team of students, postdocs and professors to move the project forward... member of the team to accomplish so that many elements of the project were able to move forward quickly...of Zika Virus Using Programmable Biomolecular Components." Cell (2016). PubMed PMID: 27160350. Find Plasmids...

...Take the DIY approach and start a blog. Stellar talents like Ed Yong jumpstarted their science writing ...AAAS Mass Media Fellowship, which places science students for 10 busy weeks at media outlets like National...MIT’s OpenCourseware for course materials and assignments.  9) Citizen science projects Lastly, if you'...

...scientists, I have spent hours sifting through comments and papers to find the most reliable (and cost-effective...of animals), and wrong application (different experiments/conditions can change binding ability – i.e.,...produced in large “copies.” This homogeneity circumvents the batch-to-batch variability found in polyclonal...

...discussions are becoming a ubiquitous format for events and sessions in scientific conferences. They can...a table. It adds a formality and distance that prevents interaction with each other and the audience. ... inviting interesting friends and colleagues to events for this purpose. If possible, make sure the panelists...

... antibodies for aminoacyl tRNA synthetases Nanocompartments for yeast bioproduction pathways The CRISPR...with previous research, which required protein compartments to co-localize multiple enzymes in a reaction...expressing GCaMP6f with this promoter. Image calcium transients in PV interneurons with AAV-S5E2-GCaMP6f are ...

...to be inert, to not produce artifacts in your experiments. Considerable effort has gone into making FPs...biosensors were made with CFP and YFP, cyan and yellow variants of EGFP equally capable of dimerizing as EGFP....for Your Needs Get Tips for Using FRET in Your Experiments Additional Resources on Addgene.org Browse ...

...find more detailed information about the plasmid contents? The middle section of our plasmid pages contain...information you'll need to use the plasmid in your experiments: Backbone: The starting vector that the depositing...from Addgene!).  It also contains links to any agreements under which the plasmid is distributed.  All ...

...difficult to ensure comparable expression of all components of Cascade for maximum efficiency of the process...During DNA repair, there is a chance that the two breakpoints will repair without the section between the two... mentioned issues with expressing all Cascade components can make Cas9 easier to work with than Cas3. ...

...exception to this effect -- meticulously designed experiments in labs around the world were put on hold indefinitely...the likelihood in our Poisson process into two components: 𝜃x(t) and 𝜓z(t). 𝜃x(t) describes the exponential...corresponding factor 𝜙z if t is during event z. The "events" we considered for our model were weekends, Christmas...

...CRISPR affinity purification in situ of regulatory elements (CAPTURE) (Liu et al., 2017). This system utilizes...techniques, this method also has great potential for improvements and adaptations that can provide an increased..."Efficient sequence‐specific isolation of DNA fragments and chromatin by in vitro enCh IP technology using...

...virus, we will see that they are very central determinants of how AdVs behave, and in fact, of how adenoviral...present in the HEK293T cell line used (which have fragments of the AdV genome in them, including the E1 region...intracellularly-exposed proteins and downstream cellular events, all recruit strong innate and adaptive immune ...

... that introduced an ancestry bias into their experiments instead of a true correlation.   It turned out...five-team response to address this issue, but it still points to a far larger and more complex problem endemic...contributes to false negatives in CRISPR-based experiments with varying burden across ancestries. Sean A...

...copy number of the plasmid increases, increased amounts of these antisense RNAs inhibit plasmid replication...The concentration of negative regulation system elements in the cell is artificially high for both plasmids... uncommon, or perhaps a synthetic biologist who wants to develop a plasmid-based tool that is easy to ...

...regularly spaced denticles (bristles) outline the segments of the Drosophila embryo. In flies with non-functional...1997). We have a lot of plasmids that contain components of the SB transposon system including those from...of this gene name but the larval gut of bagpipe mutants vaguely resemble a bagpipe and historically, bagpipes...

...ccdB gene die off and a higher percentage of transformants contain the ccdB-less construct. Other toxin-antitoxin...described, the hok/sok systems consist of three components: Host killing (hok), a long-living toxin that...selective pressure is necessary or for long-term experiments. They’ve also helped researchers design and optimize...

...community obtained high-quality data for our DNA-based reagents. Not only do we extract as much information as...system that we chose needed to fulfill certain requirements: Customizable to our specific needs Modern ...-well plate basis, but for rapid testing and refinements, we specified a select small number of input ...

...remember where you read particular studies or experiments. Later, you can easily convert the citation style...much you can get done between office hours and experiments. A comment about citing: I wasn’t sure if I should... be revolutionary, but you could include a few comments on where you think the field is going or what ...

...silencing required addition of chromatic-opening agents to boost expression to appreciable levels. We wanted...expression and robustness without chromatin-opening agents. It ended up being very straightforward to engineer...for improved purity and contrast. For in vivo experiments, simply induce injected engineered cells via ...