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  1. Protocol - Bacterial Transformation

    Type
    Protocol
    ...commonly referred to as 'competent cells.' Many companies sell competent cells, which come frozen and are...instructions that came with your competent cells. Pro-Tips Commercial competent cells range significantly in their... or SOC media Competent cells DNA you'd like to transform Procedure Take competent cells out of -80°C ...to use electro-competent cells. Instead of relying on the heat-shock to cause the cells to take up the...DNA, especially when using highly competent cells. If you used 100-1000 ng of total DNA in a ligation you... save money, many labs also make their own competent cells. This is a relatively simple procedure and ... (usually 10 pg - 100 ng) into 20-50 μL of competent cells in a microcentrifuge or falcon tube. GENTLY...
  2. Plasmids 101: The Promoter Region – Let's Go!

    Type
    Blog Post
    ... a big issue for cells, but it may confound research results or even kill your cells if your gene of interest...necessary to replicate plasmids and make sure the cells maintains it. Here, we'll cover the promoter, which... (response elements). Promoters are about 100 to 1000 base pairs long and found upstream of their target... Because transcription machinery differs between cell types or organisms, promoters must be similarly ...variable. Bacterial promoters only work in prokaryotic cells and typically only in the same or closely related... were derived. Similarly, the various eukaryotic cell types (mammalian, yeast, plants, etc) require unique...complex, having fewer parts than those in eukaryotic cells. Some promoters are constitutively active and on...
  3. Plasmids 101: NGS Quality Control for Pooled Libraries

    Type
    Blog Post
    ...represented. Typically, Addgene uses electrocompetent Stbl4 cells when performing amplifications, and ...during transformation First, use enough DNA and competent bacteria to ensure all components of the library...DNA. This bias can be counteracted by growing the cells on solid plates, where each transformant forms its...own colony, uninfluenced by the growth of other cells. For libraries where the plasmids are all very similar...you want to have 100x-1000x coverage of your library: in other words, 100-1000x more reads than number...
  4. Plasmids 101: Gateway Cloning

    Type
    Blog Post
    ...performed, the next step is to transform competent E. coli cells and select the positive clones. The entry... expression of the human KRAS gene in mammalian cells. STEP 1: Generate an Entry Clone There are a few...ccdB gene. Since the ccdB product is toxic to the cell, Gateway cloning efficiency can reach >99%. ...digest! Then, you can transform or transfect the cells that you want to use for your experiments and verify...Phage (Lambda) and Higher Organisms (Cambridge, MA: Cell Press). Additional Resources on the Addgene Blog...Drawbacks. Clon Transgen 4:138. doi:10.4172/2168-9849.1000138 2. Hartley JL. Use of the Gateway System for...
  5. CRISPR Library Amplification

    Type
    Protocol
    ...obtained. Ensure that electrocompetent cells are being used. Chemically competent cells will not provide adequate...Alternatives include Stbl4 cells or other ultra-high efficiency electrocompetent cells that are suitable for...limited. Day 2: Harvest cells and purify DNA (Estimated time 3-4 hours) Cells should be harvested first...HiSpeed Max, Catalog #12663) Tips (1000 µL, 200 µL, 10 µL) Bacti Cell Spreaders (VWR, 60828-680) 5 mL and...Maxipreps rely on incremental, ordered cell lysis. E. coli cells are subject to lysis by freeze-thaw if...MicroPulser TM , Bio-Rad 1652100) Reagents 200 µL electrocompetent cells (Default: 4 tubes of Endura Duos, Lucigen... or recombination-prone DNA. The use of electrocompetent cells is essential to ensure high efficiency ...
  6. Typing CRISPR Systems

    Type
    Blog Post
    ...III CRISPR-Cas Immunity. Cell, 161(5), 1164–1174. https://doi.org/10.1016/j.cell.2015.04.027 Stella, G.,...and is able to target and edit RNA in mammalian cells. Type IV Type IV is the middle child (like me!) ...-Cas3 for genome-editing applications. Molecular Cell, 84(3), 463-475.e5. https://doi.org/10.1016/j.molcel...biotechnology toolbox for and beyond genome editing. Cell & Bioscience, 8(1). https://doi.org/10.1186/s13578...and Genome Editing, 3–4, 100013. https://doi.org/10.1016/j.ggedit.2022.100013 Additional resources on ...hypotheses that they are involved in plasmid competition or can hijack machinery from other CRISPR systems...CRISPR–Cas systems are highly diverse and involved in competition between plasmids. Nucleic Acids Research, 48(...
Showing: 1 - 6 of 6 results