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...Journal Weighting Example Article Number (A) Year Published (B) Number of Citations (C) Journal Name (D...its vast network of articles to track the total number of citations the paper receives. From the database...correlation, but it wouldn’t be causal. To control for a number of differences between those papers with Addgene... see the full impact from using these weighted numbers. Note: this does drop some journals from our dataset...

...our partnership with Addgene to sequence large numbers of plasmids. plexWell™ technology overview For...pooled library prep”, in which a relatively large number of samples are subjected to a DNA-barcoding step... problem often arises from the fact that large numbers of individual input DNA samples (e.g. a collection...time and consumables, can be daunting for large numbers of samples. As mentioned above, one of the primary...that normalized libraries are produced from large numbers of samples with a wide range of input concentrations...

...regulation of bacterial ORIs determines plasmid copy number within the bacterial cell. Similarly, the specific...yeast cell. These elements control not only the number of plasmids found in each cell, but also whether...+ copies to stably propagate per cell. The copy number of these vectors can also be controlled if specific...than normal physiological levels due to high copy numbers. This creates a potential metabolic burden on the...thus allowing the yeast to maintain higher copy numbers. Additionally, improvements in antibiotic selection...

... a specific number of fragments, you can also ask it to give the maximum or minimum number of fragments...complete with predicted fidelity. You can specify number of overhangs, three or four base-pair sequences... it into multiple fragments. You can define the number of fragments, and the “search windows” you’d like...types, circular assemblies yielded 500 times the number of plaques than the linear ones. The 52-piece circular...

...able to include specific plasmid ID numbers. If you know the ID number for a plasmid, your straightforward...own CSO. But what if you don’t have plasmid ID numbers, or you aren’t sure if any plasmids from a paper...potential results. Just as in the previous layout, the number of plasmids matching each filter is displayed in... Only see plasmids with more than the indicated number of requests Availability to Industry: Restrict ...

...properly, it is unstable and may only work for a small number of qPCR runs before a new one is needed. For these...of the target DNA. This partitioning reduces the number of PCR inhibitors per reaction and allows for enhanced...control wells. You’ll also notice a reduction in the number of positive droplets as the dilutions increase....here are a few things you can try: Increase the number of cycles. After additional rounds of amplification...PCR is well suited for the detection of low copy numbers. For this reason, it can be used in the detection...

...fusion.  The former allows for screening greater numbers, but the latter eliminates the step of identifying...leading to detectable reporter signals depend on a number of factors, including protein expression and correct... or more of these parameters can lead to a high number of false negatives in Y2H screens. Testing your... a wide range of prey proteins, there are now a number of two-hybrid systems available in model organisms...and produce a more vigourous screen is to use a number of different bait and prey vectors. This has been...

...assembly levels, you will be using an increasing number of parts in your one-pot one-step reactions and...efficiency, as concentration does not equal the number of DNA molecules. A solution of a longer DNA fragment...to perform your assemblies, but you have a high number to get through. It’s time to think big and perform...experimental costs. If you are planning to perform a high number of assemblies, you will also likely need to miniprep...plates. Plate wisely You will likely see fewer numbers of colonies (and therefore positive colonies) after...

...efficacy in any given system can be affected by any number of factors, including the age of the model organism...and targeting The amount of vectors available and number of requests tell only part of the story. Viral ...delivering their payload to.   Figure 2: Numbers of AAV tools, by category, available from Addgene...distributed in 2023 alone. You’ll also find a large number of requests for vectors in the “controls” category... usefulness of each viral prep in practice. The number of requests shows how many scientists believe a...

...throw them away and thaw a new batch. The exact number of passages can vary between cells lines, as this... broadly recommended that the lower the passage number the better for experiments. This is to ensure the...and Working stocks of cell lines have the passage number recorded on the outside of the vial and in a cryostore...the front of the incubator containing the passage number, cell line, and date, which you complete each time...wishes to use these cells can see their passage number and key details at a glance. You should also monitor...

...Gibson assembly methods If you want to scale up the number of gRNAs in your plasmid, you’ll need to use some...to express 2-4 gRNAs, with four being the ideal number. First you generate four unique kanamycin-resistant...different destination vectors depending on the total number of gRNAs you wish to clone, from 2-7. For example...spectinomycin-resistant plasmids pX330S-2 to pX330S-(last gRNA number). The 5’ most gRNA is cloned into the Cas9-containing...destination vectors are used depending upon the total number of gRNAs you wish to clone, so you don’t have to...

... to wasted time or retractions. Using a catalog number for identifying a reagent can be helpful, but it...online. Furthermore, if the link between the catalog number and reagent description is lost (e.g. a supplier...supplier is bought out by another company and catalog number changes) the original identifier loses its meaning...plasmids. All plasmids at Addgene have unique ID numbers associated with them, which serve as unique PIDs...

...five isotypes, such as the number and location of disulfide bonds, the number of constant domains, and ...heavy chain constant domains. These are typically numbered, i.e. IgG1, IgG2, etc. Let’s dive in and meet ...valency of two. There are four IgG subclasses, numbered based on their abundance in blood: IgG1, IgG2,...

... sensitive enough to detect gene copy number based on the number of fluorescent puncta observed. By labeling...approach, fluorescently labeled Cas9’s come with a number of limitations. Since color is specified by PAM...depending on the hairpin combination bringing the total number of individual colors to 6. A gRNA with all three...

...over a hundred. Of course, these were all 2018 numbers, and the intervening five years, inflation has ...experiments. This cost varies hugely based on a number of factors, but we can assume it’s at least equal...   Designing precise calculations for any of the numbers in this post is a mathematical story well beyond...large? Using Doench’s calculations and the 2018 numbers for consumable costs, our depositors have helped...

...increase the sensitivity of an assay by increasing the number of signaling molecules associated, indirectly, ...source and are readily available conjugated to a number of different signaling molecules. With the direct...of primary antibodies can increase the possible number of target proteins.   The exception to this rule...secondary antibody will be required regardless of the number of protein targets, simplifying multiplex assays...

...carried on the transfer plasmid or quantifying the number of viral copies that have integrated into the target...measuring functional titer uses FACS to count the number of target cells that are positive for vector encoded...of lentiviral titration uses qPCR to measure the number of proviral copies that have integrated into a ...or the transgene itself are used to quantify the number of integration events. Another drawback to this...

...large number of inserts to assemble. You could also consider using Gateway if your insert number is a ...particular, another important consideration is: The number of inserts ...as some methods are more amenable...efficient; although efficiency often declines as the number of fragments you’re hoping to assemble increases...

...Additionally, CAPTURE 3C-based sequencing requires a large number of cells (~5x107). Together, these two requirements...in eukaryotic cells. Using this tag reduces the number of CAPTURE components that need to be delivered...BioTAP-tagged dCas9 and an eGFP tag, and 2) gRNAs Number of loci targeted One Many Sample type(s) Cell...such as ChIA-PET or Hi-C, by increasing both the number of unique chromatin interactions identified and...

...particularly useful when trying to screen a limited number of cells like primary cells or in vivo. Recently...performance, an important criterion for probing a limited number of cells. Get the Brunello CRISPRko sgRNA library...essential for viability. In addition, high copy number genes may mimic viability genes as they are subject... while mitigating toxicity induced by high copy number dsDNA cutting. A Dolcetto library containing only...