Guide to Using Pooled Libraries
Type
Guide
...in an shRNA screen should show consistent results from the multiple shRNAs that target it. shRNA libraries...Cannot capture regulatory/isoform complexity shRNA/RNAi shRNA libraries permit reversible loss-of-function...identification of the shRNA a given cell carries. Addgene currently does not distribute any shRNA libraries, but...noncoding RNA studies. Each library contains multiple shRNA sequences for each target gene – a true positive...postivie or negative screens. The use of appropriate controls (positive and negative) is the responsibility ...Negative screen: Apply library Perform NGS on a control sample (no selection) Apply selection; most cells...cells Compare NGS results between experimental and control cells Generate a list of library plasmids that ...