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mito-V5-APEX2 Citations (21)

Originally described in: Directed evolution of APEX2 for electron microscopy and proximity labeling.
Lam SS, Martell JD, Kamer KJ, Deerinck TJ, Ellisman MH, Mootha VK, Ting AY Nat Methods. 2014 Nov 24. doi: 10.1038/nmeth.3179.
PubMed Journal

Articles Citing mito-V5-APEX2

Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells. Martell JD, Deerinck TJ, Lam SS, Ellisman MH, Ting AY. Nat Protoc. 2017 Sep;12(9):1792-1816. doi: 10.1038/nprot.2017.065. Epub 2017 Aug 10. PubMed
High-quality ultrastructural preservation using cryofixation for 3D electron microscopy of genetically labeled tissues. Tsang TK, Bushong EA, Boassa D, Hu J, Romoli B, Phan S, Dulcis D, Su CY, Ellisman MH. Elife. 2018 May 11;7. pii: 35524. doi: 10.7554/eLife.35524. PubMed
CryoAPEX - an electron tomography tool for subcellular localization of membrane proteins. Sengupta R, Poderycki MJ, Mattoo S. J Cell Sci. 2019 Mar 18;132(6). pii: 132/6/jcs222315. doi: 10.1242/jcs.222315. PubMed
Content release of extracellular vesicles in a cell-free extract. Bonsergent E, Lavieu G. FEBS Lett. 2019 Jun 7. doi: 10.1002/1873-3468.13472. PubMed
Presynaptic Mitochondria Volume and Abundance Increase during Development of a High-Fidelity Synapse. Thomas CI, Keine C, Okayama S, Satterfield R, Musgrove M, Guerrero-Given D, Kamasawa N, Young SM Jr. J Neurosci. 2019 Oct 9;39(41):7994-8012. doi: 10.1523/JNEUROSCI.0363-19.2019. Epub 2019 Aug 27. PubMed
Proximity-dependent biotin labelling reveals CP190 as an EcR/Usp molecular partner. Mazina MY, Ziganshin RH, Magnitov MD, Golovnin AK, Vorobyeva NE. Sci Rep. 2020 Mar 16;10(1):4793. doi: 10.1038/s41598-020-61514-0. PubMed
Proximity Labeling for the Identification of Coronavirus-Host Protein Interactions. V'kovski P, Steiner S, Thiel V. Methods Mol Biol. 2020;2203:187-204. doi: 10.1007/978-1-0716-0900-2_14. PubMed
Integration of signals from different cortical areas in higher order thalamic neurons. Sampathkumar V, Miller-Hansen A, Sherman SM, Kasthuri N. Proc Natl Acad Sci U S A. 2021 Jul 27;118(30). pii: 2104137118. doi: 10.1073/pnas.2104137118. PubMed
Activation of the integrated stress response confers vulnerability to mitoribosome-targeting antibiotics in melanoma. Vendramin R, Katopodi V, Cinque S, Konnova A, Knezevic Z, Adnane S, Verheyden Y, Karras P, Demesmaeker E, Bosisio FM, Kucera L, Rozman J, Gladwyn-Ng I, Rizzotto L, Dassi E, Millevoi S, Bechter O, Marine JC, Leucci E. J Exp Med. 2021 Sep 6;218(9):e20210571. doi: 10.1084/jem.20210571. Epub 2021 Jul 21. PubMed
Genetically encoded X-ray cellular imaging for nanoscale protein localization. Kong H, Zhang J, Li J, Wang J, Shin HJ, Tai R, Yan Q, Xia K, Hu J, Wang L, Zhu Y, Fan C. Natl Sci Rev. 2020 Jul;7(7):1218-1227. doi: 10.1093/nsr/nwaa055. Epub 2020 Apr 2. PubMed
Partial connectomes of labeled dopaminergic circuits reveal non-synaptic communication and axonal remodeling after exposure to cocaine. Wildenberg G, Sorokina A, Koranda J, Monical A, Heer C, Sheffield M, Zhuang X, McGehee D, Kasthuri B. Elife. 2021 Dec 29;10. pii: 71981. doi: 10.7554/eLife.71981. PubMed
alpha-/gamma-Taxilin are required for centriolar subdistal appendage assembly and microtubule organization. Ma D, Wang F, Wang R, Hu Y, Chen Z, Huang N, Tian Y, Xia Y, Teng J, Chen J. Elife. 2022 Feb 4;11:e73252. doi: 10.7554/eLife.73252. PubMed
HSP90 and Aha1 modulate microRNA maturation through promoting the folding of Dicer1. Liu X, Yang YY, Wang Y. Nucleic Acids Res. 2022 Jun 23. pii: 6613913. doi: 10.1093/nar/gkac528. PubMed
A versatile viral toolkit for functional discovery in the nervous system. Pouchelon G, Vergara J, McMahon J, Gorissen BL, Lin JD, Vormstein-Schneider D, Niehaus JL, Burbridge TJ, Wester JC, Sherer M, Fernandez-Otero M, Allaway KC, Pelkey K, Chittajallu R, McBain CJ, Fan M, Nasse JS, Wildenberg GA, Fishell G, Dimidschstein J. Cell Rep Methods. 2022 May 26;2(6):100225. doi: 10.1016/j.crmeth.2022.100225. eCollection 2022 Jun 20. PubMed

Associated Plasmids

Atypical nuclear envelope condensates linked to neurological disorders reveal nucleoporin-directed chaperone activities. Prophet SM, Rampello AJ, Niescier RF, Gentile JE, Mallik S, Koleske AJ, Schlieker C. Nat Cell Biol. 2022 Nov;24(11):1630-1641. doi: 10.1038/s41556-022-01001-y. Epub 2022 Oct 27. PubMed
Amyotrophic Lateral Sclerosis-Associated Mutants of SOD1 Modulate miRNA Biogenesis through Aberrant Interactions with Exportin 5. Chen X, He X, Yang YY, Wang Y. ACS Chem Biol. 2022 Dec 16;17(12):3450-3457. doi: 10.1021/acschembio.2c00591. Epub 2022 Dec 7. PubMed
mcPGK1-dependent mitochondrial import of PGK1 promotes metabolic reprogramming and self-renewal of liver TICs. Chen Z, He Q, Lu T, Wu J, Shi G, He L, Zong H, Liu B, Zhu P. Nat Commun. 2023 Feb 27;14(1):1121. doi: 10.1038/s41467-023-36651-5. PubMed
Redox proteomics combined with proximity labeling enables monitoring of localized cysteine oxidation in cells. Kisty EA, Falco JA, Weerapana E. Cell Chem Biol. 2023 Mar 16;30(3):321-336.e6. doi: 10.1016/j.chembiol.2023.02.006. Epub 2023 Mar 7. PubMed
The deubiquitinase OTUB1 governs lung cancer cell fitness by modulating proteostasis of OXPHOS proteins. Sheryazdanova A, Amoedo ND, Dufour S, Impens F, Rossignol R, Sablina A. Biochim Biophys Acta Mol Basis Dis. 2023 Oct;1869(7):166767. doi: 10.1016/j.bbadis.2023.166767. Epub 2023 May 26. PubMed
Importance of glutamine in synaptic vesicles revealed by functional studies of SLC6A17 and its mutations pathogenic for intellectual disability. Jia X, Zhu J, Bian X, Liu S, Yu S, Liang W, Jiang L, Mao R, Zhang W, Rao Y. Elife. 2023 Jul 13;12:RP86972. doi: 10.7554/eLife.86972. PubMed
Ultrastructure of Synaptic Connectivity within Subregions of the Suprachiasmatic Nucleus Revealed by a Genetically Encoded Tag and Serial Blockface Electron Microscopy. Calligaro H, Shoghi A, Chen X, Kim KY, Yu HL, Khov B, Finander B, Le H, Ellisman MH, Panda S. eNeuro. 2023 Aug 23;10(8):ENEURO.0227-23.2023. doi: 10.1523/ENEURO.0227-23.2023. Print 2023 Aug. PubMed

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