Skip to main content

We narrowed to 121 results for: mouse c rel

Showing: 101 - 120 of 121 results
  1. Cancer and the Immune System: Deciphering the Relationship

    Type
    Blog Post
    ...T-regs) into their microenvironment by producing C-C motif chemokine 22 (CCL22) and TGFβ. T-regs are suppressive...fight against cancer in its many forms. The dichotomous interactions between tumors and the immune system...tolerance-producing antigens enunciated above. Finally, signals released from the microenvironment help create tolerance...eradicate metastasis or eliminate the probability of a relapse. Chemical and radiation therapies cause a transient...
  2. Technologies Enabled by NanoLuc® Luciferase

    Type
    Blog Post
    ...plasmids for Antares or firefly luciferase into mouse livers followed by i.v. injection of furimazine ...composed of Venus fluorescent protein, the Troponin C Ca++ binding domain, and NanoLuc® Luciferase. CalFlux...Many intracellular sensors of events like calcium release have been made using fluorescent resonance energy...biosensors, the intensity of the FRET signal can be correlated to specific concentrations of biological molecules...et al. (7) wished to trigger intracellular Ca++ release with an optogenetic receptor, melanopsin, requiring...
  3. To Codon Optimize or Not: That is the Question

    Type
    Blog Post
    ...Sauna ZE, Kimchi-Sarfaty C (2011) Understanding the contribution of synonymous mutations to human disease...cells. For example, Henry Lester’s lab optimized the C. elegans GluCl ion channel genes for expression in...Santana-Quintero LV, Katneni U, Simonyan V, Kimchi-Sarfaty C (2017) A new and updated resource for codon usage ...–34 . https://doi.org/10.1038/nsmb1031 Gustafsson C, Govindarajan S, Minshull J (2004) Codon bias and ...usage important? Translation and protein synthesis relies on transfer RNAs (tRNAs). tRNAs bind to and deliver...studies have shown that translational efficiency is correlated with codon bias across all endogenous genes in...engineering to improve gene expression by changing synonymous codons based on an organism's codon bias. The...
  4. Negative Can Be Positive: Open AAV Data with Addgene

    Type
    Blog Post
    ...into the A2 noradrenergic area of the caudal NST. (A-C) Low-magnification images showing viral spread. (D-F...Backer, M. W. A., Brans, M. A. D., Luijendijk, M. C., Garner, K. M., & Adan, R. A. H. (2010). Optimization...Gruntman, A. M., Su, L., Su, Q., Gao, G., Mueller, C., & Flotte, T. R. (2015). Stability and compatibility...data free. Nature, 5–7. O’Connor, D. M., Lutomski, C., Jarrold, M. F., Boulis, N. M., & Donsante, A. (2019...Malaker, S. A., Poweleit, N., Maynard, L. H., Adams, C. M., Leib, R. D., Cirolia, G., Thomas, D., Stamnes...doi.org/10.1016/j.ymthe.2005.02.021 Zuk, P., Sanchez, C. E., Kostick, K., Torgerson, L., Muñoz, K. A., Hsu... AAV questions every year on a range of issues related to AAV vectors, many from people trying to answer...
  5. CRISPR Activation: A Practical Guide

    Type
    Blog Post
    ...Wilkinson P, van der Meer D, Dow D, Buser-Doepner C, Bertotti A, Trusolino L, Stronach EA, Saez-Rodriguez...-019-1103-9 Bialek JK, Dunay GA, Voges M, Schäfer C, Spohn M, Stucka R, Hauber J, Lange UC (2016) Targeted...Adamson B, Villalta JE, Chen Y, Whitehead EH, Guimaraes C, Panning B, Ploegh HL, Bassik MC, Qi LS, Kampmann ...Brigham MD, Trevino AE, Joung J, Abudayyeh OO, Barcena C, Hsu PD, Habib N, Gootenberg JS, Nishimasu H, Nureki..., Weir BA, Hahn WC, Marsh JA, Tsherniak A, Kadoch C (2018) Interrogation of Mammalian Protein Complex ...Biologically Inspired Engineering. CRISPR/Cas9 is an enormously plastic tool and has taken the scientific world...providing a new gRNA rather than engineering an entirely new protein. This makes it much cheaper to use...
  6. Plasmids 101: Using Transposons in the Lab

    Type
    Blog Post
    ... its preferred target integration site: TNA(C/G)TTATAA(G/C)TNA. Tol2 can deliver 10-11 kB to mammalian...   References and Resources References Feschotte C, Pritham EJ (2007) DNA Transposons and the Evolution...BioRender.com.   Autonomous vs. non-autonomous TEs You can think of autonomous transposons as “complete...Both class I and II transposons can be autonomous or non-autonomous. DNA transposons commonly used in the...first copy themselves as RNA transcripts and then rely on a reverse transcriptase enzyme to reverse transcribe...a transposase or a reverse transcriptase. Non-autonomous transposons, however, need another TE to express...
  7. Transferable Skills Guide: Conflict Resolution

    Type
    Blog Post
    ...create solution C. And if a conflict resolver does their job well, not only will solution C be better than...many sources of conflict are substantive (“Person C told Person A one thing and inadvertently told Person... 1: Quote from Michael Ende, courtesy of morefamousquotes.com A good listener absorbs and remembers...between two different teams at work, I don’t just rely on what I know about those particular teams at that...
  8. Tips and Tricks for Using Golden Gate Modular Cloning (MoClo)

    Type
    Blog Post
    ...; CDSns, coding sequence with no stop codon; TAG, C-terminal tag; TER, terminator. Created with BioRender.com... is very important that these stay frozen at -80 °C, since multiple rounds of freezing and thawing will...in what position do you want your gene to be in relation to the rest of the genes? And do you want it to...function of the sequence, normally through the synonymous mutation of a codon. You can domesticate the ...
  9. Management for Scientists: Seeking Feedback

    Type
    Blog Post
    ...ask at least one question to clarify the situation; C = confirm that you have understood the speaker accurately...brings feedback back to the manager. Team members rarely rush to give honest feedback to the manager for..., like at lunch. Many experts recommend using anonymous surveys with regular frequency. Anonymity can ...
  10. Antibodies 101: Fc Effector Functions

    Type
    Blog Post
    ...) antibody-dependent cellular cytotoxicity (ADCC) c) antibody-dependent cellular phagocytosis (ADCP). ...cells expressing Fcγ receptors binds to IgG and release cytotoxins that kill the target cell. If the pathogen...antibodies and eosinophils, where the eosinophils release cytotoxins via degranulation.  Antibody-dependent...the elimination style the immune system is most famous for is eating. In antibody-dependent cellular phagocytosis...
  11. Choosing Your Perfect Empty Backbone

    Type
    Blog Post
    ...of our most popular mammalian expression vectors, c-Flag pcDNA3, comes from the pcDNA series. It has the...pDEST-HisMBP). After purification the protein can be released from the resin and used for various binding or...may prefer the more traditional approach of an autonomously replicating vector that carries either a wild-type...
  12. Fluorescent Protein Travel Awards - FLiPs and Fluorescent Protein Biosensors

    Type
    Blog Post
    ...light. Previous iterations of FLiPs only used N- and C-terminal dronpa fusions. With these various designs...The late Michael Davidson and Roger Tsien played enormous roles in enabling researchers to utilize and develop... produce two biosensors that could quickly and reliably detect HMOs. Fatima’s first design is a whole ...enzyme breaks down the HMO of interest, the lactose released activates expression of GFP from the lac operon...
  13. Plan Your Experiment

    Type
    Guide
    ...Whitehead, E. H., Guimaraes, C., Panning, B., Ploegh, H. L., Bassik, M. C., Qi, L. S., Kampmann, M., &...enables researchers to manipulate the genome with relative ease. Over the past decade, researchers have expanded...method is a common choice for generating modified mouse lines. Protein delivery Lastly, you can deliver ... edit through HDR. Base and prime editing are relatively inefficient methods and often require screening...Electroporation enables the efficient mRNA delivery into the mouse zygotes and facilitates CRISPR/Cas9-based genome...Delivery Validate Genetic Edit References CRISPR ( C lustered R egularly I nterspaced S hort P alindromic...25408407 Dixit, A., Parnas, O., Li, B., Chen, J., Fulco, C. P., Jerby-Arnon, L., Marjanovic, N. D., Dionne, D...
  14. Transferable Skills Guide: Teamwork

    Type
    Blog Post
    ...course, many types of teams. Some teams may be relatively permanent; some teams may only need to exist ... my senior year isolating pheromones from various C. elegans mutants by myself, I would have slowly gone...what drew me to the school in the first place. The famous discoveries and experiments I’d been learning about... knows everything anymore John F. Kennedy once famously said “I think this is the most extraordinary collection...
  15. Genetic Code Expansion

    Type
    Collection
    .... coli p-azido-L-phenylalanine (Azf) C. elegans ATG David Tirrell 62599 pKPY197 phenylalanyl-tRNA synthetase...C.elegans p-azido-L-phenylalanine (Azf) C. elegans ATG David Tirrell 63177 pMarsL274G methionyl-tRNA synthetase...coli azi-donorleucine (Anl) Bacterial ATG David Tirrell 62598 pKPY514 phenylalanyl-tRNA synthetase subunit...musculus azidonorleucine (Anl) Mammalian ATG David Tirrell 64915 pMAH-POLY tyrosyl-tRNA synthetase E. coli...musculus azidonorleucine (Anl) Mammalian ATG David Tirrell 91705 pSupAR-MbPylRS(DiZPK) PylRS M. barkeri photocrosslinkers...using genetic code expansion without buildup of prematurely truncated protein. Ryan Mehl 197656 BL21(DE3)... by tolC, and tyrU gene replaced by GentR) and release factor 1. Expresses archaeal MjTyrRS/tRNA pair ...
  16. Chemogenetics Guide

    Type
    Guide
    ...Prakash, M., Ikefuama, E. C., Friedman, N., Brown, T. M., Lipscombe, D., Moore, C. I., Hochgeschwender, U...., Lambert, G. G., Lipscombe, D., Moore, C. I., Shaner, N. C., & Hochgeschwender, U. (2024). Engineering...Pleil, K. E., Mazzone, C. M., Mosier, P. D., Song, J., Kash, T. L., Malanga, C. J., Krashes, M. J., … ... firing through stimulating phospholipase C, which releases intracellular calcium stores. There are currently...viral injection or use of genetically engineered mouse models. For viral injection, Adeno-associated virus...Calakos, N., & Roth, B. L. (2013). A Gαs DREADD Mouse for Selective Modulation of cAMP Production in Striatopallidal... U., & Shaner, N. C. (2024). Efficient opto- and chemogenetic control in a single molecule driven by FRET-modified...
  17. Optogenetics Guide

    Type
    Guide
    ...achieved in a transgenic mouse line, such as for example the VGAT-ChR2 mouse, where ChR2 is expressed ...Matthews, G. A., Acker, L. C., Sørensen, A. T., Young, A., Klapoetke, N. C., Henninger, M. A., Kodandaramaiah...Ogawa, M., Ramanlal, S. B., Bandler, R. C., Allen, B. D., Forest, C. R., Chow, B. Y., Han, X., Lin, Y., Tye...Hedrich, R., Hegemann, P., Konrad, K. R., Lüscher, C., Mahn, M., Pan, Z. H., Sims, R. R., Vierock, J., ... 37933248 Gradinaru, V., Zhang, F., Ramakrishnan, C., Mattis, J., Prakash, R., Diester, I., Goshen, I....journal.pone.0000299 PMID: 17375185 Klapoetke, N. C., Murata, Y., Kim, S. S., Pulver, S. R., Birdsey-Benson...Mattis, J., Tye, K. M., Ferenczi, E. A., Ramakrishnan, C., O'Shea, D. J., Prakash, R., Gunaydin, L. A., Hyun...
  18. Lentiviral Vector Guide

    Type
    Guide
    .... M., Chen, I. S., Hahn, W. C., Sharp, P. A., Weinberg, R. A., & Novina, C. D. (2003). Lentivirus-delivered...Browse Addgene's collection of barcoding libraries . Mouse Modeling Since the development of safer lentiviral...disease-associated genes. Gene Therapy Due to their relative safety and ability to transduce non-dividing cells...lentiviral gene therapies have been shown to be relatively safe and effective. Viral Vector Safety The two...Plasmid Elements Plasmid Type Element Delivery relative to transgene Purpose Transfer plasmid LTR in cis...PMID: 33768124 Marshall, H. M., Ronen, K., Berry, C., Llano, M., Sutherland, H., Saenz, D., Bickmore, ...PMID: 18092005 Merten, O., Hebben, M., & Bovolenta, C. (2016). Production of lentiviral vectors. Molecular...
  19. Gamma-Retroviral Vector Guide

    Type
    Guide
    ...ecotropic envelope, Phoenix-ECO (for infection of mouse and rat cells), or an amphotropic envelope, Phoenix-AMPHO...Plasmid Elements Plasmid Type Element Delivery relative to transgene Purpose Transfer plasmid LTR in cis...Wong, G. K., Cameron, E. R., Kilbey, A., & Neil, J. C. (2016). Gamma-Retrovirus integration marks cell Type-Specific...10.1371/journal.pone.0154070 PMID: 27097319 LaFave, M. C., Varshney, G. K., Gildea, D. E., Wolfsberg, T. G....gkt1399 PMID: 24464997 Maetzig, T., Galla, M., Baum, C., & Schambach, A. (2011). Gammaretroviral vectors:...Rubat, L., Nikoniuk, A., Macmorland, W., Horlock, C., Matsumoto, S., Williams, S., Smith, K., Price, J.... The HEK293T cells will produce the virus and release it into the supernatant. After an initial media...
  20. Adeno-associated virus (AAV) Guide

    Type
    Guide
    ...Michael, S., Kuleshova, E., Ojala, D., Huang, C. C., Gerfen, C. R., Schiller, J., Dudman, J. T., Hantman,...Technology References Burger, C., Gorbatyuk, O. S., Velardo, M. J., Peden, C. S., Williams, P., Zolotukhin... include the Allen Mouse Brain Connectivity Atlas and the Janelia Campus MouseLight project . rAAV vectors...genes makes them suitable to be packaged in the relatively small rAAV capsids. Learn more about optogenetics...Plasmid Elements Plasmid Type Element Delivery relative to transgene Purpose Transfer/Shuttle plasmid ... Ravi, N., Wu, W. L., Sánchez-Guardado, L., Lois, C., Mazmanian, S. K., Deverman, B. E., & Gradinaru, ...) Liu, D., Li, T., Liu, L., Che, X., Li, X., Liu, C., & Wu, G. (2024). Adeno-associated virus therapies...
Showing: 101 - 120 of 121 results