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Showing: 141 - 155 of 155 results
  1. CRISPR 101: Epigenetics and Editing the Epigenome

    Type
    Blog Post
    ...enhancer regions (Mendenhall et al., 2013). By comparing gene activation when enhancers were active or ...increased gene activation at the targeted site compared to other Tet1 delivery systems. Transcriptional...) Vlatka Zoldoš’ lab has deposited pdCas9-DNMT3A-EGFP and pdCas9-DNMT3A-PuroR for targeted cytosine methylation...methylation in mammalian cells. Co-expression markers EGFP and PuroR enable sorting and selection of transduced...Goodell's lab has deposited pcDNA3.1-dCas9-MQ1(Q147L)-EGFP, a fusion of dCas9 to a small DNA methyltransferase...epigenome-editing tools. pLV hUbC-dCas9-MQ1(Q147L)-EGFP is also available for lentiviral transduction. Lysine-specific...
  2. Zebrafish Plasmid Collection

    Type
    Collection
    ...including Myc, HA, Flag, GST and eGFP epitopes. Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative ...Sauka-Spengler Lab. A genetic binary system for cell- and compartment-specific biotin labeling in zebrafish. pGCS Vector...
  3. Arf GTPase Family

    Type
    Collection
    ...proteins, which also serve effector roles). A compatible GEF, GTPase, and GAP set is referred to as a ...Arap2 116984 1704 GAP Arap3 64411 1544 Mammalian (pEGFP-C2) GAP Acap1 9744 740 Mammalian (pFLAG-CMV2) GAP... 9267 398 Gateway GEF Cyth2 9266 400 Mammalian (pEGFP-C1), Gateway GEF Cyth3 9265 399 Gateway GEF Cyth4...
  4. Tips for CRISPR Gene Editing in Mice

    Type
    Blog Post
    ...halves of EGFP to recombine by homology directed repair, and resulting in the expression of EGFP. Using ...ordering the sgRNA is simple and easy. Several companies supply gRNA sequences, such as GenScript, ThermoFisher...order them yourself through whatever DNA supply company you currently use. You can also find many previously...indicates where your target is inserted, disrupting the EGFP fluorescent signal, for details on this plasmid,...
  5. Hot Plasmids and Viral Preps - July 2021

    Type
    Blog Post
    ..., and disease. In order to expand their model’s impact, organoid users have recently begun to develop ...circularly permuted green fluorescent protein or cpGFP) to the petunia SL enzymatic receptor DAD2. SLs ...which modulates the fluorescence intensity of the cpGFP without altering that of the internal control (Fig...these novel biosensors could have a major economic impact.   Design and mechanism of action of the...
  6. TALEN Engineering

    Type
    Collection
    ...Human Genes TALENs for the EGFP Reporter Gene Additional Plasmids compatible with the REAL Assembly TALEN...
  7. Adenoviral Delivery of CRISPR/Cas9 Aims to Expand Genome Editing to Primary Cells

    Type
    Blog Post
    ...Delivering gRNA and Cas9 using adenoviral vectors As compared to other viral vectors, AdVs can provide a large... pAdSh.PGK.Cas9, pAdSh.U6.gRNAS1, and pAdSh.U6.gRNAGFP. Gonçalves says that advantages of AdVs include...guide RNA constructs, pAdSh.U6.gRNAS1 and pAdSh.U6.gRNAGFP, and also Adeno Cas9 and Adeno EA. Or if you're...
  8. A Practical Approach to Choosing the B(right)est Fluorescent Protein

    Type
    Blog Post
    ...fluorescent proteins, how to do a head-to-head comparison of fluorescent proteins and how to make a well-informed...your selection on a small-scale head-to-head comparative study under conditions that best mimic the intended... QY (EC*QY, sometimes normalized to the value of EGFP). The higher the number, the higher the theoretical...protein properties and provides a quick way to compare fluorescent proteins, e.g. see Chudakov et al (...is of no use. Therefore, it is more sensible to compare fluorescent proteins based on their practical brightness...promising fluorescent proteins and to determine and compare their practical brightness in a system closely ...application. In figure 2 we provide an example of the comparison of the practical brightness of two orange fluorescent...
  9. FPbase: A new community-editable fluorescent protein database

    Type
    Blog Post
    ...Protein Property Visualization allows for visual comparison of FPs and how they relate to one another. .  ...FPbase Fluorescence Spectra Viewer can be used to compare excitation and emission spectra when available,...relating to that specific protein (for instance: EGFP).  Users can “favorite” certain proteins, or create...you or your lab use frequently) for the sake of comparison or ease of retrieval.  These collection pages...store and represent within-study photobleaching comparisons.  We very much appreciate feedback, so try out...
  10. Multiplexed Capture of Promoter-enhancer 3D Chromatin Structures Using CRISPR

    Type
    Blog Post
    .... This is cumbersome and also makes it hard to compare results across multiple targets because different...primary cells. Find plasmids for CAPTURE 2.0! When compared to the original CAPTURE, CAPTURE 2.0 had a ~14...sequence targeted in the experiment. Figure 2: Comparing CAPTURE and CAPTURE 2.0.     Original CAPTURE...lentiviruses delivering 1) a BioTAP-tagged dCas9 and an eGFP tag, and 2) gRNAs Number of loci targeted One ...regulation. When chromatin conformation data is compared with changes in gene expression, chromatin accessibility...
  11. Easi-CRISPR: Generating Knock-In and Conditional Mouse Models

    Type
    Blog Post
    ... complex secondary structure. Today, multiple companies offer long single-stranded DNA production services...maximum Easi-CRISPR efficiency. Easi-CRISPR is compatible with standard microinjection and electroporation...commonly used cassettes, such as fluorescent proteins (EGFP, mCherry etc.), recombinases (Cre, Flp etc.), and...placed to mediate electroporation. Ohtsuka et al. compared traditional microinjection and i-GONAD knock-in...efficiency using a small ssDNA, and they found comparable efficiencies (52 vs 49%). In contrast, Easi-CRISPR...
  12. Minigenomes - a Safe Way to Study Dangerous Viruses Like the Ebola Virus

    Type
    Blog Post
    ...non-viral) reporter gene (e.g. firefly luciferase or eGFP) flanked by the EBOV-specific gene start and gene... genes in this plasmid would be more difficult compared to if each gene were encoded in separate (and ...performed in the absence of some viral proteins (compared to viral infection). Therefore, the roles/functions...PMCID: PMC3586226. 4. Mühlberger, Elke, et al. "Comparison of the transcription and replication strategies...
  13. How to Deposit Your Plasmids with Addgene

    Type
    Blog Post
    ...Please describe any tags or fusions (e.g. His, FLAG, EGFP, etc) on your insert. Use the drop-down menu to ...Addgene Plasmids The Importance of a Fun Workplace: Company Culture at Addgene Resources on the Addgene Website...
  14. Viral Vectors 101: Systemic Capsids

    Type
    Blog Post
    ...derived from AAV9, their efficacy is generally compared to the AAV9 serotype or an engineered precursor...to be administered concurrently to minimize the impact of neutralizing antibodies developed in response...doesn’t lead to enhanced transgene expression, compared to AAV9, in BALB/cJ mice but is more effective... by the Gradinaru lab (Deverman et al., 2016). Compared to AAV9, it effectively transduces neurons and...toward astrocytes, but its neuron transduction encompasses more molecularly-defined neuronal subtypes and...astrocytes and neurons, with greatly increased efficacy compared to AAV9 (Hanlon et al., 2019). This capsid was...relatively even distribution of target gene expression (EGFP, in the depositing manuscript) across the brain....
Showing: 141 - 155 of 155 results