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pEVOL-pBpF Citations (44)

Originally described in: Addition of a photocrosslinking amino acid to the genetic code of Escherichiacoli.
Chin JW, Martin AB, King DS, Wang L, Schultz PG Proc Natl Acad Sci U S A. 2002 Aug 20;99(17):11020-4. Epub 2002 Aug 1.
PubMed Journal

Articles Citing pEVOL-pBpF

Regulation of alpha-endosulfine, an inhibitor of protein phosphatase 2A, by multisite phosphorylation. Mochida S. FEBS J. 2014 Feb;281(4):1159-69. doi: 10.1111/febs.12685. Epub 2014 Jan 9. PubMed
Signal recognition particle and SecA cooperate during export of secretory proteins with highly hydrophobic signal sequences. Zhou Y, Ueda T, Muller M. PLoS One. 2014 Apr 9;9(4):e92994. doi: 10.1371/journal.pone.0092994. eCollection 2014. PubMed
Trapped translocation intermediates establish the route for export of capsular polysaccharides across Escherichia coli outer membranes. Nickerson NN, Mainprize IL, Hampton L, Jones ML, Naismith JH, Whitfield C. Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8203-8. doi: 10.1073/pnas.1400341111. Epub 2014 May 19. PubMed
Mechanism of polyubiquitination by human anaphase-promoting complex: RING repurposing for ubiquitin chain assembly. Brown NG, Watson ER, Weissmann F, Jarvis MA, VanderLinden R, Grace CR, Frye JJ, Qiao R, Dube P, Petzold G, Cho SE, Alsharif O, Bao J, Davidson IF, Zheng JJ, Nourse A, Kurinov I, Peters JM, Stark H, Schulman BA. Mol Cell. 2014 Oct 23;56(2):246-60. doi: 10.1016/j.molcel.2014.09.009. Epub 2014 Oct 9. PubMed
Site-specific Interaction Mapping of Phosphorylated Ubiquitin to Uncover Parkin Activation. Yamano K, Queliconi BB, Koyano F, Saeki Y, Hirokawa T, Tanaka K, Matsuda N. J Biol Chem. 2015 Oct 16;290(42):25199-211. doi: 10.1074/jbc.M115.671446. Epub 2015 Aug 10. PubMed
Evaluating Sense Codon Reassignment with a Simple Fluorescence Screen. Biddle W, Schmitt MA, Fisk JD. Biochemistry. 2015 Dec 22;54(50):7355-64. doi: 10.1021/acs.biochem.5b00870. Epub 2015 Dec 5. PubMed
Binding of the Covalent Flavin Assembly Factor to the Flavoprotein Subunit of Complex II. Maklashina E, Rajagukguk S, Starbird CA, McDonald WH, Koganitsky A, Eisenbach M, Iverson TM, Cecchini G. J Biol Chem. 2015 Dec 7. pii: jbc.M115.690396. PubMed
Ubiquitin utilizes an acidic surface patch to alter chromatin structure. Debelouchina GT, Gerecht K, Muir TW. Nat Chem Biol. 2017 Jan;13(1):105-110. doi: 10.1038/nchembio.2235. Epub 2016 Nov 21. PubMed
Molecular Mechanism of Substrate Processing by the Cdc48 ATPase Complex. Bodnar NO, Rapoport TA. Cell. 2017 May 4;169(4):722-735.e9. doi: 10.1016/j.cell.2017.04.020. PubMed
The mechanism of variability in transcription start site selection. Yu L, Winkelman JT, Pukhrambam C, Strick TR, Nickels BE, Ebright RH. Elife. 2017 Nov 23;6. pii: 32038. doi: 10.7554/eLife.32038. PubMed
Peroxisomal monoubiquitinated PEX5 interacts with the AAA ATPases PEX1 and PEX6 and is unfolded during its dislocation into the cytosol. Pedrosa AG, Francisco T, Bicho D, Dias AF, Barros-Barbosa A, Hagmann V, Dodt G, Rodrigues TA, Azevedo JE. J Biol Chem. 2018 Jul 20;293(29):11553-11563. doi: 10.1074/jbc.RA118.003669. Epub 2018 Jun 8. PubMed
Structural insights into ubiquitin phosphorylation by PINK1. Okatsu K, Sato Y, Yamano K, Matsuda N, Negishi L, Takahashi A, Yamagata A, Goto-Ito S, Mishima M, Ito Y, Oka T, Tanaka K, Fukai S. Sci Rep. 2018 Jul 10;8(1):10382. doi: 10.1038/s41598-018-28656-8. PubMed
Outer membrane lipoprotein RlpA is a novel periplasmic interaction partner of the cell division protein FtsK in Escherichia coli. Berezuk AM, Glavota S, Roach EJ, Goodyear MC, Krieger JR, Khursigara CM. Sci Rep. 2018 Aug 28;8(1):12933. doi: 10.1038/s41598-018-30979-5. PubMed
Site-Specific Labelling of Multidomain Proteins by Amber Codon Suppression. Heil CS, Rittner A, Goebel B, Beyer D, Grininger M. Sci Rep. 2018 Oct 5;8(1):14864. doi: 10.1038/s41598-018-33115-5. PubMed
Delete_Ubiquitin-Independent Disassembly by a p97 AAA-ATPase Complex Drives PP1 Holoenzyme Formation. Weith M, Seiler J, van den Boom J, Kracht M, Hulsmann J, Primorac I, Del Pino Garcia J, Kaschani F, Kaiser M, Musacchio A, Bollen M, Meyer H. Mol Cell. 2018 Oct 11. pii: S1097-2765(18)30791-3. doi: 10.1016/j.molcel.2018.09.020. PubMed
Membrane trafficking of the bacterial adhesin GspB and the accessory Sec transport machinery. Spencer C, Bensing BA, Mishra NN, Sullam PM. J Biol Chem. 2019 Feb 1;294(5):1502-1515. doi: 10.1074/jbc.RA118.005657. Epub 2018 Dec 4. PubMed
Butelase 1-Mediated Ligation of Peptides and Proteins. Hemu X, Zhang X, Bi X, Liu CF, Tam JP. Methods Mol Biol. 2019;2012:83-109. doi: 10.1007/978-1-4939-9546-2_6. PubMed
Site-Specific Photocrosslinking to Immunoglobulin G Using Photoreactive Antibody-Binding Domains. Zappala F, Tsourkas A. Methods Mol Biol. 2019;2033:275-286. doi: 10.1007/978-1-4939-9654-4_18. PubMed
Mechanism of centromere recruitment of the CENP-A chaperone HJURP and its implications for centromere licensing. Pan D, Walstein K, Take A, Bier D, Kaiser N, Musacchio A. Nat Commun. 2019 Sep 6;10(1):4046. doi: 10.1038/s41467-019-12019-6. PubMed

Associated Plasmids

Bioluminescent Antibodies through Photoconjugation of Protein G-Luciferase Fusion Proteins. Wouters SFA, Vugs WJP, Arts R, de Leeuw NM, Teeuwen RWH, Merkx M. Bioconjug Chem. 2020 Mar 18;31(3):656-662. doi: 10.1021/acs.bioconjchem.9b00804. Epub 2020 Jan 22. PubMed

Associated Plasmids

Nonredundant functions of Mycobacterium tuberculosis chaperones promote survival under stress. Harnagel A, Lopez Quezada L, Park SW, Baranowski C, Kieser K, Jiang X, Roberts J, Vaubourgeix J, Yang A, Nelson B, Fay A, Rubin E, Ehrt S, Nathan C, Lupoli TJ. Mol Microbiol. 2021 Feb;115(2):272-289. doi: 10.1111/mmi.14615. Epub 2020 Nov 3. PubMed
Structure of bacterial phospholipid transporter MlaFEDB with substrate bound. Coudray N, Isom GL, MacRae MR, Saiduddin MN, Bhabha G, Ekiert DC. Elife. 2020 Nov 25;9. pii: 62518. doi: 10.7554/eLife.62518. PubMed

Associated Plasmids

Evaluation of an antibody-PNA conjugate as a clearing agent for antibody-based PNA-mediated radionuclide pretargeting. Myrhammar A, Vorobyeva A, Westerlund K, Yoneoka S, Orlova A, Tsukahara T, Tolmachev V, Karlstrom AE, Altai M. Sci Rep. 2020 Nov 27;10(1):20777. doi: 10.1038/s41598-020-77523-y. PubMed
A plug-and-play platform of ratiometric bioluminescent sensors for homogeneous immunoassays. Ni Y, Rosier BJHM, van Aalen EA, Hanckmann ETL, Biewenga L, Pistikou AM, Timmermans B, Vu C, Roos S, Arts R, Li W, de Greef TFA, van Borren MMGJ, van Kuppeveld FJM, Bosch BJ, Merkx M. Nat Commun. 2021 Jul 28;12(1):4586. doi: 10.1038/s41467-021-24874-3. PubMed
Photo-activatable Ub-PCNA probes reveal new structural features of the Saccharomyces cerevisiae Poleta/PCNA complex. Shen S, Davidson GA, Yang K, Zhuang Z. Nucleic Acids Res. 2021 Sep 20;49(16):9374-9388. doi: 10.1093/nar/gkab646. PubMed
Cohesin mediates DNA loop extrusion by a "swing and clamp" mechanism. Bauer BW, Davidson IF, Canena D, Wutz G, Tang W, Litos G, Horn S, Hinterdorfer P, Peters JM. Cell. 2021 Oct 14;184(21):5448-5464.e22. doi: 10.1016/j.cell.2021.09.016. Epub 2021 Oct 7. PubMed
Comparative Analyses of the Transcriptome and Proteome of Escherichia coli C321. big up tri, openA and Further Improving Its Noncanonical Amino Acids Containing Protein Expression Ability by Integration of T7 RNA Polymerase. Yi H, Zhang J, Ke F, Guo X, Yang J, Xie P, Liu L, Wang Q, Gao X. Front Microbiol. 2021 Sep 29;12:744284. doi: 10.3389/fmicb.2021.744284. eCollection 2021. PubMed
XACT-seq: A photocrosslinking-based technique for detection of the RNA polymerase active-center position relative to DNA in Escherichia coli. Pukhrambam C, Vvedenskaya IO, Nickels BE. STAR Protoc. 2021 Oct 8;2(4):100858. doi: 10.1016/j.xpro.2021.100858. eCollection 2021 Dec 17. PubMed
Enhancement of Activity and Thermostability of Keratinase From Pseudomonas aeruginosa CCTCC AB2013184 by Directed Evolution With Noncanonical Amino Acids. Pan X, Yang J, Xie P, Zhang J, Ke F, Guo X, Liang M, Liu L, Wang Q, Gao X. Front Bioeng Biotechnol. 2021 Oct 18;9:770907. doi: 10.3389/fbioe.2021.770907. eCollection 2021. PubMed
Targeted substrate loop insertion by VCP/p97 during PP1 complex disassembly. van den Boom J, Kueck AF, Kravic B, Muschenborn H, Giesing M, Pan D, Kaschani F, Kaiser M, Musacchio A, Meyer H. Nat Struct Mol Biol. 2021 Dec;28(12):964-971. doi: 10.1038/s41594-021-00684-5. Epub 2021 Nov 25. PubMed
Structure of Hsp90-Hsp70-Hop-GR reveals the Hsp90 client-loading mechanism. Wang RY, Noddings CM, Kirschke E, Myasnikov AG, Johnson JL, Agard DA. Nature. 2022 Jan;601(7893):460-464. doi: 10.1038/s41586-021-04252-1. Epub 2021 Dec 22. PubMed
Translocation of polyubiquitinated protein substrates by the hexameric Cdc48 ATPase. Ji Z, Li H, Peterle D, Paulo JA, Ficarro SB, Wales TE, Marto JA, Gygi SP, Engen JR, Rapoport TA. Mol Cell. 2022 Feb 3;82(3):570-584.e8. doi: 10.1016/j.molcel.2021.11.033. Epub 2021 Dec 23. PubMed
Direct measurements of mRNA translation kinetics in living cells. Metelev M, Lundin E, Volkov IL, Gynna AH, Elf J, Johansson M. Nat Commun. 2022 Apr 6;13(1):1852. doi: 10.1038/s41467-022-29515-x. PubMed
Microarray screening reveals two non-conventional SUMO-binding modules linked to DNA repair by non-homologous end-joining. Cabello-Lobato MJ, Jenner M, Cisneros-Aguirre M, Bruninghoff K, Sandy Z, da Costa IC, Jowitt TA, Loch CM, Jackson SP, Wu Q, Mootz HD, Stark JM, Cliff MJ, Schmidt CK. Nucleic Acids Res. 2022 May 6;50(8):4732-4754. doi: 10.1093/nar/gkac237. PubMed
Bioluminescent RAPPID Sensors for the Single-Step Detection of Soluble Axl and Multiplex Analysis of Cell Surface Cancer Biomarkers. van Aalen EA, Wouters SFA, Verzijl D, Merkx M. Anal Chem. 2022 May 3;94(17):6548-6556. doi: 10.1021/acs.analchem.2c00297. Epub 2022 Apr 19. PubMed
Rapid, site-specific labeling of "off-the-shelf" and native serum autoantibodies with T cell-redirecting domains. Zappala F, Higbee-Dempsey E, Jang B, Miller J, Yan L, Minutolo NG, Rosado Gonzalez GT, Tsourkas A, Ozdemir BA. Sci Adv. 2022 May 6;8(18):eabn4613. doi: 10.1126/sciadv.abn4613. Epub 2022 May 6. PubMed
Lipids mediate supramolecular outer membrane protein assembly in bacteria. Webby MN, Oluwole AO, Pedebos C, Inns PG, Olerinyova A, Prakaash D, Housden NG, Benn G, Sun D, Hoogenboom BW, Kukura P, Mohammed S, Robinson CV, Khalid S, Kleanthous C. Sci Adv. 2022 Nov 4;8(44):eadc9566. doi: 10.1126/sciadv.adc9566. Epub 2022 Nov 2. PubMed
Turning antibodies off and on again using a covalently tethered blocking peptide. Brasino M, Wagnell E, Hamilton S, Ranganathan S, Gomes MM, Branchaud B, Messmer B, Ibsen SD. Commun Biol. 2022 Dec 10;5(1):1357. doi: 10.1038/s42003-022-04094-1. PubMed
Single-Particle Functionality Imaging of Antibody-Conjugated Nanoparticles in Complex Media. Woythe L, Tholen MME, Rosier BJHM, Albertazzi L. ACS Appl Bio Mater. 2023 Jan 16;6(1):171-181. doi: 10.1021/acsabm.2c00830. Epub 2023 Jan 3. PubMed
Integrated Bioluminescent Immunoassays for High-Throughput Sampling and Continuous Monitoring of Cytokines. van Aalen EA, Rosier BJHM, Jansen T, Wouters SFA, Vermathen RT, van der Veer HJ, Yeste Lozano J, Mughal S, Fernandez-Costa JM, Ramon-Azcon J, den Toonder JMJ, Merkx M. Anal Chem. 2023 Jun 13;95(23):8922-8931. doi: 10.1021/acs.analchem.3c00745. Epub 2023 May 30. PubMed
Structural basis of ubiquitin-independent PP1 complex disassembly by p97. van den Boom J, Marini G, Meyer H, Saibil HR. EMBO J. 2023 Jul 17;42(14):e113110. doi: 10.15252/embj.2022113110. Epub 2023 Jun 2. PubMed
The UBX domain in UBXD1 organizes ubiquitin binding at the C-terminus of the VCP/p97 AAA-ATPase. Blueggel M, Kroening A, Kracht M, van den Boom J, Dabisch M, Goehring A, Kaschani F, Kaiser M, Bayer P, Meyer H, Beuck C. Nat Commun. 2023 Jun 5;14(1):3258. doi: 10.1038/s41467-023-38604-4. PubMed
Mapping Antibody Domain Exposure on Nanoparticle Surfaces Using DNA-PAINT. Tholen MME, Rosier BJHM, Vermathen RT, Sewnath CAN, Storm C, Woythe L, Izquierdo-Lozano C, Riera R, van Egmond M, Merkx M, Albertazzi L. ACS Nano. 2023 Jun 27;17(12):11665-11678. doi: 10.1021/acsnano.3c02195. Epub 2023 Jun 7. PubMed
Bacterial J-Domains with C-Terminal Tags Contact the Substrate Binding Domain of DnaK and Sequester Chaperone Activity. Nelson B, Soper N, Lupoli TJ. Chembiochem. 2023 Oct 17;24(20):e202300261. doi: 10.1002/cbic.202300261. Epub 2023 Aug 29. PubMed

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