...(ras related) RALBP1 RalA binding protein 1 RALGDS Ral guanine nucleotide dissociation stimulator RAPGEF...have an active (GTP) and inactive (GDP) state, regulated by the addition and removal of a phosphate group...GTPases play prominent roles in signaling pathways regulating cell migration, survival, adhesion, growth, and...differentiation and survival. Ras is essential for regulating the growth of the cell, however when mutations...for clarity and does not indicate a specific relationship. The content and map for this page were generated...EIF4EBP EIF4EBP1 EIF4EBP2 EIF4EBP3 Eukaryotic translation initiation factor 4E binding protein ERBB2 Erb-b2...

...cortical interneurons under the control of the E2 regulatory element Jordane Dimidschstein 135630-AAV9 pAAV-S5E2...cortical interneurons under the control of the E2 regulatory element Jordane Dimidschstein 135630-PHPeB pAAV-S5E2...cortical interneurons under the control of the E2 regulatory element Jordane Dimidschstein 135631-AAV1 pAAV-S5E2...cortical interneuronsunder the control of the E2 regulatory element Jordane Dimidschstein 135631-AAV9 pAAV-S5E2...cortical interneuronsunder the control of the E2 regulatory element Jordane Dimidschstein 135631-PHPeB pAAV-S5E2...cortical interneuronsunder the control of the E2 regulatory element Jordane Dimidschstein 135632-AAV1 pAAV-S5E2...cortical interneuronsunder the control of the E2 regulatory element Jordane Dimidschstein 135632-AAV9 pAAV-S5E2...

...include histone acetylation by p300, histone demethylation by LSD1, cytosine methylation by DNMT3A or MQ1...changes, researchers use ssDNA or dsDNA repair templates with homology to the DNA flanking the DSB and ...edit close to the gRNA PAM site. When a repair template is present, the cell may repair a DSB using homology-directed...Cut Base Edit Nick Prime Edit Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting ...100 bp window. This technique creates diverse populations of mutants for directed evolution. ID Plasmid...Nickase mutants can also be used with a repair template to introduce specific edits via homology-directed...primer binding site and the desired edits on an RT template. ID Plasmid Gene/Insert Promoter Selectable Marker...

...NTR 2.0/MTZ-based cell ablation system that allows sustained cell loss and ablation of previously...localization in high-throughput. MAZERATI platform - Leonard Zon Lab. A platform to rapidly model potential cancer...embryo and larvae, it is easy to culture large populations that are amenable to genetics, high-throughput...emerged as a model system for human disease and translational research, including the study of cancer, inflammation... enabling CRISPR/dCas9-interference (CRISPRi) modulation of enhancers and non-coding RNAs in zebrafish...organism lineage tracing by combinatorial and cumulative genome editing - Jay Shendure Lab Simultaneous...droplet reporters - Richard White Lab. An imaging platform to study lipid dynamics in vivo. Bimolecular fluorescence...

... of treatments and cures for Rett Syndrome and related MECP2 disorders. The RSRT has a comprehensive, ...diagnostic criteria, defined as the presence of relatively normal early development, regression with a loss...The MECP2 protein is a global transcriptional regulator of thousands of genes and studies have suggested...is not clear, however, the ability to bind to methylated DNA and recruit known co-repressors or other ...modifiers suggests the major function of MECP2 is to regulate gene expression either locally or globally. The...NID demonstrating the importance of binding to methylated DNA and the recruitment of the NCoR complex for... MECP2 null alleles or common mutations that recapitulate Rett syndrome in humans. MECP2 knockout rats...

...interneurons under the control of the E2 regulatory element Viral manipulation of functionally distinct interneurons...calcium sensors for imaging activity in neuronal populations and microcompartments. Nat Methods. 2019 Jul;...GCaMP6f Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron... enhancer A viral strategy for targeting and manipulating interneurons across vertebrate species. Nat ...) Improved methods for marking active neuron populations. Nat Commun. 2018 Oct 25;9(1):4440. Eric Schreiter...ER-targeted CEPIA1er ER-mitochondria tethering by PDZD8 regulates Ca(2+) dynamics in mammalian neurons. Science....sensitivity Sensitive genetically encoded sensors for population and subcellular imaging of cAMP in vivo. Nat ...

...through both phosphorylation and acetylation, which disrupt its interaction with negative regulators, increase...Caspase 3, apoptosis-related cysteine peptidase CASP8 Caspase 8, apoptosis-related cysteine peptidase CASP9...allow it to bind transcriptional co-activators and modulate transcription. The list of p53 transcriptional...for clarity and does not indicate a specific relationship. p53 Pathway Color is used for clarity and does... does not indicate a specific relationship. The content for this page was generated with the help of .... CASP9 Caspase 9, apoptosis-related cysteine peptidase Cyclin B CCNB1 CCNB2 CCNB3 Cyclin B1, 2, or 3 Cyclin...proto-oncogene, E3 ubiquitin protein ligase MDMX p53 regulator; also known as MDM4 Noxa Phorbol-12-myristate-...

... a variety of cell populations in different brain regions. Labeled cell populations were tested in mouse...for cell populations in the following regions: Isocortex Hippocampal formation Cortical subplate Striatum...AiP20013 AiE2674m SYFP2 Entorhinal area, lateral part - L2 stellate neurons Hippocampal formation 214479 ...labeling and recombination across brain regions and populations created by the Allen Institute for Brain Science...Enhancer AAV plasmids are plasmids which use genomic regulatory sequences — termed enhancers — to drive cell ...fluorescent labeling across brain regions and populations using systemic AAV delivery. The collection includes...Institute ID Enhancer ID FP/Recombinase Labeled Population Region 230551 pAAV-AiE2638m-minBG-SYFP2-WPRE3...

... Select Your Desired Genetic Manipulation Different genetic manipulations require different CRISPR components...Select gene and genetic element to be manipulated In order to manipulate a given gene using CRISPR, you will...Plan Your Experiment Overview Select Genetic Manipulation Select Expression System Design gRNA Publications...a powerful system that enables researchers to manipulate the genome like never before. This section will...other organisms. First, consider the genetic manipulation that is necessary to model your specific disease...components. Selecting a specific genetic manipulation can be a good way to narrow down which reagents are...existing reagent to suit your needs. Genetic Manipulation Application Cas9 gRNA Additional Considerations...

... cell culture. Five years later, PubMed lists more than 6,300 CRISPR-related publications, many of which...specific, programmable platform well-suited for various biological and translational technologies. Biotechnology... a target gene. On the other hand, if a repair template with homology arms was supplied, the break could...could be repaired according to this template, allowing for precise gene editing. These edits can include...convert adenosine to inosine on RNA. Inosine is translated as guanosine, so the overall effect is an A->...to transcriptional activators or repressors can modulate transcription in a reversible manner. Epigenetics...Epigenetics : dCas9 fused to epigenetic modifiers can modulate transcriptions and create heritable epigenetic...

...including histone acetylation/demethylation, and cytosine methylation/demethylation....include: histone acetylation by p300 histone demethylation by LSD1 cytosine methylation by DNMT3A or MQ1...Cut Base Edit Nick Prime Edit Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting ...MQ1 cytosine demethylation by Tet1 These modifications persist over time and are potentially heritable...

...viral expression of molecular payloads in target populations defined by multiple parameters....expressing these tools in well-defined cellular sub-populations has generally been limited to single-component...viral expression of molecular payloads in target populations defined by multiple parameters. Figure 1: Examples...Examples of intersectional cell population definitions using recombinases. A) Cre and Flp are multiplexed... to enable intersectional viral targeting of populations expressing only Cre AND Flp, Cre NOT Flp, or ...recombinase-expression strategies to define cellular sub-populations of interest, including dual-transgenic recombinase-expressing...AND NOT Cre Dual recombinase-dependent: Rabies-related Addgene ID Plasmid Logic Sites and Mutations 131779...

...cells several days later, and isolating genomic DNA. This DNA is then used as a template to amplify a portion...Next-generation sequencing is performed on viral genomes isolated from the final AAV preparation. Sequencing results...of AAV preparations is assayed by comparing the relative stoichiometric ratios of the viral capsid proteins...SYPRO Ruby staining and the molecular weight and relative intensity of the viral capsid proteins are analyzed...Viral capsid proteins VP1, VP2, and VP3 are shown relative to the total protein present in the sample. Sterility...are added to cells in culture. Three to five days later, cell cultures are inspected for sterility. Transducibility...-AAVrg) alone at 1.1E6 vg/mL, or both. Two days later, Cre-dependent GFP expression was detected with ...

...available at Addgene. Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis (ALS), sometimes referred...individuals develop late-onset AD. There is no clear association between a gene and late-onset AD. It is ... between a person’s thirties and mid-sixties, or late-onset, where symptoms appear during or after a person's...APOE), such as the ε4 allele, are a risk factor for late-onset AD. Many more genes have been associated with...reporter to study tau seeding in mammalian cells. Lathuiliere et al. Mol Neurodegener. 2023 Aug 8. Study the...growing collection of general and neuroscience -related antibodies including: Anti-KChIP1 K+ channel [K55...high-volume hybridoma sequencing on the NeuroMabSeq platform. Mitchell et al. Sci Rep. 2023 Sep 27. See More...

...investigate the effect of regulatory elements, such as promoters, enhancers and untranslated regions, or the effect...mutations of these regulatory elements on gene expression. Empty backbones for inserting regulatory elements before...luciferase plasmids for assays of transcriptional regulation and bioluminescent reporters. Plasmid...luciferase gene.. TREAT (3( T hree)′- R NA E nd A ccumulation during T urnover) : Single-molecule mRNA turnover...Optimized STARR-seq ( S elf- T ranscribing A ctive R egulatory R egion) plasmids : Genome-wide screening of enhancer...cloning to test for the presence of transcriptional regulatory region in specific cell types. Used to identify...backbone plasmids into which you can clone your regulatory element or gene of interest into to create a ...

...Overview of tetracycline regulated inducible transcriptional activation or repression...Additional Resources: Browse Tetracycline Plasmids Tet-regulated Lentiviral RNAi Vectors Curated Plasmid Collections...promoter is reduced. To use tetracycline as a regulator of gene expression, a tetracycline-controlled ..., is a preferred effector for tetracycline transregulation. Dox binds with high affinity to tTA and rtTA...and Tet-On 3G transactivator, creating an auto-regulated Tet-On 3G System. Contains homology arms for integration...sites and EF1α promoter driving tTA; contains insulator sequence; plasmid pEnt L1L3 rtTA-3 is a rtTA version...cell transcription factor fusion derivatives, regulates inducible gene expression in mammalian cells. ...

...plasmids related to metabolic pathways and auxiliary components. Networks and Gene Regulation Browse plasmids...Lab Biopixels Jaramillo Lab Riboregulation Keasling Lab BglBrick Platform , Terpenoid Production , and...Category Cloning and Genomic Tools Browse plasmids related to cloning and genomic modification, including ...containing both naturally occurring and synthetic regulatory elements, including promoters, terminators, repressors...networks. Sensing and Signaling Browse plasmids related to intercellular signaling and environmental sensing...Plasmids and Phagemids Balazsi Lab Negative Autoregulation and Yeast-Mammalian Circuit Transfer C. Collins...

...the knowledge and understanding of COVID-19 and related coronaviruses. To assist with this effort Addgene...plasmids available that may be useful for COVID-19 related research. Additionally, we have linked to collections...articles, protocols, and other resource collections related to COVID-19 that may be of use to scientists. Background...Description Industry PI Due to export control regulations, MERS and SARS-CoV materials are available only...entry of SARS-CoV and SARS-CoV-2. Find plasmids related to these genes below. ID Plasmid Description Industry... in the body. For a full list of cytokines and related plasmids see our Immunology Resource Guide . Return...and DETECTR - Simple, portable, and inexpensive platforms to reliably detect nucleic acids at the atomolar...

...Technologies and Methods for Targeted Neuronal Manipulation Meeting Date September 21, 2018 Contact Us Questions...molecular tools to achieve targeted neuronal manipulation (aka intersectional control). The end result...Serotype specificity, AAV dosing, and Other Forms of Regulation Ben Deverman 2:00 PM Cre-DOG and Combinatorial...and how it can be used for targeted neuronal manipulation. Topics may include: How this technology is ...is used for targeted neuronal manipulation. Practical tips for using the technology in the lab (e.g., controls...big picture of methods for targeted neuronal manipulation? Best practices for using this techonology in...presenting on) is used to achieve targeted neuronal manipulation. Figures, tables, data, or images on best practices...

...changes, researchers use ssDNA or dsDNA repair templates with homology to the DNA flanking the DSB and ...edit close to the gRNA PAM site. When a repair template is present, the cell may repair a DSB using homology-directed...Cut Base Edit Nick Prime Edit Transcriptional Regulation Activate Interfere Epigenetics RNA Targeting ...Nickase mutants can also be used with a repair template to introduce specific edits via homology-directed...primer binding site and the desired edits on an RT template. ID Plasmid Gene/Insert Promoter PI Publication... to direct the dCas9-activator to promoter or regulatory regions of your gene of interest. If the plasmid...the spread of infection throughout the entire population. ID Plasmid Promoter PI Publication Purify A ...