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Addgene

Enter a sequence to perform a BLAST-based search of Addgene plasmid sequence databases.

In Category

We narrowed to 921 results for: ire;

Showing: 881 - 900 of 921 results

  1. CRISPR Library Amplification

    Type
    Protocol
    ...possible but note that individual libraries may require modifications dictated by the originating laboratory... can be scaled according to the actual number. Required Quality Control (QC) Pooled libraries can be challenging...a smaller plasmid containing only the elements required for bacterial propagation (origin of replication...100,000 plasmids. Colonies may appear small and require extra incubation time in order to be enumerated...colonies but as long as one can ensure more than the required colonies are present. If colonies are not present...can dramatically plateau and sometimes fall off entirely if the column or reagents are significantly overloaded...

  2. Protocol - pLKO.1 – TRC Cloning Vector

    Type
    Protocol
    ... RNAi Consortium has built a library of shRNAs directed against 15,000 human and 15,000 mouse genes. Addgene...shRNAs. pLKO.1 can be introduced into cells via direct transfection, or can be converted into lentiviral...protein expression, you may transfect plasmid DNA directly into the target cells. The shRNA will be expressed...OPTI-MEM necessary given that each reaction will require 6 μL FuGENE® + 74 μL OPTI-MEM. For example: 1x ...polypropylene tube, add OPTI-MEM first. Pipette FuGENE® directly into the OPTI-MEM – do not allow FuGENE® to come...for a total volume of 100 μL. Pipette master mix directly into the liquid and not onto the walls of the ...

  3. Protocol - How to Perform Sequence Analysis

    Type
    Protocol
    ...verify the ends of the insert. Longer genes may require internal primers that anneal to a specific region...portion of the insert, but we do not sequence the entire plasmid. Addgene strongly recommends that you...Make sure the primer only anneals once within the entire construct. Is the primer an appropriate distance... within the Addgene sequencing results? If you require additional sequencing and need to design a custom...

  4. Protocol - How to Inoculate a Bacterial Culture

    Type
    Protocol
    ...bottle may explode!) and then loosely cover the entire top of the bottle with aluminum foil. Autoclave...shaking incubator. Note: Some plasmids or strains require growth at 30°C. If so, you will likely need to ...in the media (see right). Notes: Some protocols require bacteria to be in the log phase of growth. Check...bacteria incubated at 30°C rather than 37°C often require longer incubation times. Double check that the ...

  5. Centrifugation

    Type
    Protocol
    ... in 1.5 mL microfuge tubes at 10,000 rpm would require a tabletop microcentrifuge like the one in the ... you are working. Even if your samples may not require specific PPE, you never know what else has been...RPM), these are not the same units and are not directly interchangeable. If you need to convert between...supernatant. Depending on your experiment, you may be required to save the pellet, the supernatant, or both. ...

  6. Colony Formation Titering Assay

    Type
    Protocol
    ...cell lines and selection markers. Note this assay requires staining resistant colonies with crystal violet...colony formation assay, the dose of antibiotic required to kill your target cell line needs to be empirically...minimum concentration (Link opens in a new window) required to kill all of the cells. Use this dose for the...cell suspension into each well of the 6-well dish directly on top of the virus. Swirl gently to mix and place...

  7. Plasmid Cloning by Restriction Enzyme Digest (with Protocols)

    Type
    Protocol
    ..., but do not cut within your insert Are in the desired location in your recipient plasmid (usually in ...possible to use a single enzyme, but this will require phosphatase treatment of your recipient plasmid... fear. You have other options, such as: Adding desired restriction sites to flank your insert : You can...restriction enzymes that cut within your insert. Adding desired restriction sites to your recipient plasmid : You...

  8. Immunocytochemistry

    Type
    Protocol
    ... per well. Allow the HeLa cells to grow to the desired density before labeling. Section 2: Fixing and ... container. Dilute the primary antibody to the desired concentration in antibody dilution buffer. Pro-...fluorescently-labeled secondary antibody to the desired concentration in antibody dilution buffer. Pro-...

  9. Using a Light Microscope Protocol

    Type
    Protocol
    ... science-fiction levels of detail. You can take entire courses on microscopy and still have more to learn...nosepiece so that the lowest power objective is directly over the stage. It is best practice to start with...attached to them that allow you to capture images directly to a computer, but many microscopes do not and...

  10. Handling Plasmids from Addgene - Purifying Plasmid DNA

    Type
    Protocol
    ...Introduction Many molecular biology techniques require highly purified and concentrated plasmid DNA. This... volume of bacteria to grow (low copy plasmids require larger cultures). Centrifuge the culture to pellet...proceeding with DNA preparation. Pro-Tip If your entire overnight culture cannot fit into a single centrifuge...

  11. Pouring LB Agar Plates

    Type
    Protocol
    ...-agar 1 L Sterile H 2 O Sterile plates of your desired size - we usually use 60 mm x 15 mm plates which...next to the flame and begin pouring. Measure your desired amount of agar with a pipete for the first plate...particular plate. For the remainder of the plates, pour directly from the bottle. Pro-Tips Be sure to swirl your...

  12. Plasmid Cloning by PCR (with Protocols)

    Type
    Protocol
    ...that: Do not cut within your insert. Are in the desired location in your recipient plasmid (usually in ...amplified (the ORF in this case), not the Tm of the entire primer. If you are amplifying from a plasmid or...plenty of starting material. We recommend using your entire PCR reaction and 1μg of recipient plasmid. It is...

  13. Affinity Purification of Recombinant Antibodies with Protein A or Protein G

    Type
    Protocol
    ...Spectrophotometer to see if the sample has reached the desired concentration. If the sample concentration is still...volume of the sample is reduced enough to reach the desired concentration. Pro-Tip Periodically check the concentration...Spectrophotometer to see if the sample has reached the desired concentration. Gently transfer the sample from ...

  14. AAV ddPCR Titration

    Type
    Protocol
    ...generally considered biosafety level 1 but may require BSL-2 handling depending on the insert. Please ...liquid up and down 10–20 times. Gently cover the entire dilution plate with Microseal adhesive seal - do...droplets are not disrupted, insert the pipette tips directly in the center of the well and tilt to a 45° angle...

  15. Protocol - How to Streak a Plate

    Type
    Protocol
    ...bacterial colonies. Equipment Sterile toothpicks or wire loop Bunsen burner (or other small flame source)... top of the glycerol stock. Pro-Tip If you use a wire loop you can sterilize it by passing it through ...

  16. Protocol - How to Purify DNA from an Agarose Gel

    Type
    Protocol
    ...and with a clean, sterile razor blade, slice the desired DNA fragment from the gel. Notes: To protect the...with the gel fragment. The weight of the gel is directly proportional to its liquid volume and this is ...

  18. Water Bath Protocol

    Type
    Protocol
    ...Set up your water bath so that it will reach the desired temperature by the time you need it for your experiment...water bath to prevent evaporation and maintain the desired temperature. This also helps the water bath heat...

  20. Protocol - How to Ligate Plasmid DNA

    Type
    Protocol
    ... likely to ligate to itself rather than to the desired insert. If you are in this situation, it is important...Additional controls are encouraged, but may only be required for troubleshooting failed ligations. The following...
Showing: 881 - 900 of 921 results