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JDS246 Citations (48)

Originally described in: Joung lab unpublished CRISPR plasmids
Joung JK Unpublished

Articles Citing JDS246

Articles
Genetic Modification in Human Pluripotent Stem Cells by Homologous Recombination and CRISPR/Cas9 System. Xue H, Wu J, Li S, Rao MS, Liu Y. Methods Mol Biol. 2014 Mar 11. PubMed
Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification. Guilinger JP, Thompson DB, Liu DR. Nat Biotechnol. 2014 Apr 25. doi: 10.1038/nbt.2909. PubMed

Associated Plasmids
CRISPR/Cas9-mediated conversion of eGFP- into Gal4-transgenic lines in zebrafish. Auer TO, Duroure K, Concordet JP, Del Bene F. Nat Protoc. 2014 Dec;9(12):2823-40. doi: 10.1038/nprot.2014.187. Epub 2014 Nov 13. PubMed
CRISPR-Cas9-Based Knockout of the Prion Protein and Its Effect on the Proteome. Mehrabian M, Brethour D, MacIsaac S, Kim JK, Gunawardana CG, Wang H, Schmitt-Ulms G. PLoS One. 2014 Dec 9;9(12):e114594. doi: 10.1371/journal.pone.0114594. eCollection 2014. PubMed

Associated Plasmids
Small molecule-triggered Cas9 protein with improved genome-editing specificity. Davis KM, Pattanayak V, Thompson DB, Zuris JA, Liu DR. Nat Chem Biol. 2015 May;11(5):316-8. doi: 10.1038/nchembio.1793. Epub 2015 Apr 6. PubMed

Associated Plasmids
CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool. Stemmer M, Thumberger T, Del Sol Keyer M, Wittbrodt J, Mateo JL. PLoS One. 2015 Apr 24;10(4):e0124633. doi: 10.1371/journal.pone.0124633. eCollection 2015. PubMed
Efficient generation of hiPSC neural lineage specific knockin reporters using the CRISPR/Cas9 and Cas9 double nickase system. Li S, Xue H, Long B, Sun L, Truong T, Liu Y. J Vis Exp. 2015 May 28;(99):e52539. doi: 10.3791/52539. PubMed
Efficient Generation of Myostatin Knock-Out Sheep Using CRISPR/Cas9 Technology and Microinjection into Zygotes. Crispo M, Mulet AP, Tesson L, Barrera N, Cuadro F, dos Santos-Neto PC, Nguyen TH, Creneguy A, Brusselle L, Anegon I, Menchaca A. PLoS One. 2015 Aug 25;10(8):e0136690. doi: 10.1371/journal.pone.0136690. eCollection 2015. PubMed
Human Induced Pluripotent Stem Cell NEUROG2 Dual Knockin Reporter Lines Generated by the CRISPR/Cas9 System. Li S, Xue H, Wu J, Rao MS, Kim DH, Deng W, Liu Y. Stem Cells Dev. 2015 Dec 15;24(24):2925-42. doi: 10.1089/scd.2015.0131. Epub 2015 Nov 5. PubMed
Homology-directed repair in rodent zygotes using Cas9 and TALEN engineered proteins. Menoret S, De Cian A, Tesson L, Remy S, Usal C, Boule JB, Boix C, Fontaniere S, Creneguy A, Nguyen TH, Brusselle L, Thinard R, Gauguier D, Concordet JP, Cherifi Y, Fraichard A, Giovannangeli C, Anegon I. Sci Rep. 2015 Oct 7;5:14410. doi: 10.1038/srep14410. PubMed
CRISPR/Cas9-mediated knockout of factors in non-homologous end joining pathway enhances gene targeting in silkworm cells. Zhu L, Mon H, Xu J, Lee JM, Kusakabe T. Sci Rep. 2015 Dec 10;5:18103. doi: 10.1038/srep18103. PubMed
Streptococcus thermophilus CRISPR-Cas9 Systems Enable Specific Editing of the Human Genome. Muller M, Lee CM, Gasiunas G, Davis TH, Cradick TJ, Siksnys V, Bao G, Cathomen T, Mussolino C. Mol Ther. 2015 Dec 14. doi: 10.1038/mt.2015.218. PubMed
CCR5 Disruption in Induced Pluripotent Stem Cells Using CRISPR/Cas9 Provides Selective Resistance of Immune Cells to CCR5-tropic HIV-1 Virus. Kang H, Minder P, Park MA, Mesquitta WT, Torbett BE, Slukvin II. Mol Ther Nucleic Acids. 2015 Dec 15;4:e268. doi: 10.1038/mtna.2015.42. PubMed
Generation of a Double KO Mouse by Simultaneous Targeting of the Neighboring Genes Tmem176a and Tmem176b Using CRISPR/Cas9: Key Steps from Design to Genotyping. Lemoine A, Chauveau-Le Friec G, Langa F, Louvet C. J Genet Genomics. 2016 May 20;43(5):329-40. doi: 10.1016/j.jgg.2016.04.004. Epub 2016 Apr 22. PubMed
Homology-Independent Integration of Plasmid DNA into the Zebrafish Genome. Auer TO, Del Bene F. Methods Mol Biol. 2016;1451:31-51. doi: 10.1007/978-1-4939-3771-4_3. PubMed
A programmable Cas9-serine recombinase fusion protein that operates on DNA sequences in mammalian cells. Chaikind B, Bessen JL, Thompson DB, Hu JH, Liu DR. Nucleic Acids Res. 2016 Aug 11. pii: gkw707. PubMed

Associated Plasmids
A ZIP6-ZIP10 heteromer controls NCAM1 phosphorylation and integration into focal adhesion complexes during epithelial-to-mesenchymal transition. Brethour D, Mehrabian M, Williams D, Wang X, Ghodrati F, Ehsani S, Rubie EA, Woodgett JR, Sevalle J, Xi Z, Rogaeva E, Schmitt-Ulms G. Sci Rep. 2017 Jan 18;7:40313. doi: 10.1038/srep40313. PubMed
Pharmacological modulators of autophagy activate a parallel noncanonical pathway driving unconventional LC3 lipidation. Jacquin E, Leclerc-Mercier S, Judon C, Blanchard E, Fraitag S, Florey O. Autophagy. 2017 May 4;13(5):854-867. doi: 10.1080/15548627.2017.1287653. Epub 2017 Feb 15. PubMed
Correction of the Exon 2 Duplication in DMD Myoblasts by a Single CRISPR/Cas9 System. Lattanzi A, Duguez S, Moiani A, Izmiryan A, Barbon E, Martin S, Mamchaoui K, Mouly V, Bernardi F, Mavilio F, Bovolenta M. Mol Ther Nucleic Acids. 2017 Jun 16;7:11-19. doi: 10.1016/j.omtn.2017.02.004. Epub 2017 Feb 10. PubMed
Extensive Proliferation of Human Cancer Cells with Ever-Shorter Telomeres. Dagg RA, Pickett HA, Neumann AA, Napier CE, Henson JD, Teber ET, Arthur JW, Reynolds CP, Murray J, Haber M, Sobinoff AP, Lau LMS, Reddel RR. Cell Rep. 2017 Jun 20;19(12):2544-2556. doi: 10.1016/j.celrep.2017.05.087. PubMed
Enhanced proofreading governs CRISPR-Cas9 targeting accuracy. Chen JS, Dagdas YS, Kleinstiver BP, Welch MM, Sousa AA, Harrington LB, Sternberg SH, Joung JK, Yildiz A, Doudna JA. Nature. 2017 Sep 20. doi: 10.1038/nature24268. PubMed

Associated Plasmids
MicroRNA degradation by a conserved target RNA regulates animal behavior. Bitetti A, Mallory AC, Golini E, Carrieri C, Carreno Gutierrez H, Perlas E, Perez-Rico YA, Tocchini-Valentini GP, Enright AJ, Norton WHJ, Mandillo S, O'Carroll D, Shkumatava A. Nat Struct Mol Biol. 2018 Mar;25(3):244-251. doi: 10.1038/s41594-018-0032-x. Epub 2018 Feb 26. PubMed
Angiomotins stimulate LATS kinase autophosphorylation and act as scaffolds that promote Hippo signaling. Mana-Capelli S, McCollum D. J Biol Chem. 2018 Nov 23;293(47):18230-18241. doi: 10.1074/jbc.RA118.004187. Epub 2018 Sep 28. PubMed
Robust and stable transcriptional repression in Giardia using CRISPRi. McInally SG, Hagen KD, Nosala C, Williams J, Nguyen K, Booker J, Jones K, Dawson SC. Mol Biol Cell. 2019 Jan 1;30(1):119-130. doi: 10.1091/mbc.E18-09-0605. Epub 2018 Oct 31. PubMed
Nicastrin haploinsufficiency alters expression of type I interferon-stimulated genes: the relationship to familial hidradenitis suppurativa. Cao L, Morales-Heil DJ, Roberson EDO. Clin Exp Dermatol. 2019 Jun;44(4):e118-e125. doi: 10.1111/ced.13906. Epub 2019 Jan 17. PubMed
Enhanced in vivo-imaging in medaka by optimized anaesthesia, fluorescent protein selection and removal of pigmentation. Lischik CQ, Adelmann L, Wittbrodt J. PLoS One. 2019 Mar 7;14(3):e0212956. doi: 10.1371/journal.pone.0212956. eCollection 2019. PubMed
In vivo imaging of evoked calcium responses indicates the intrinsic axonal regenerative capacity of zebrafish. Chen M, Huang RC, Yang LQ, Ren DL, Hu B. FASEB J. 2019 Jun;33(6):7721-7733. doi: 10.1096/fj.201802649R. Epub 2019 Mar 20. PubMed
Strategies for genetic inactivation of long noncoding RNAs in zebrafish. Lavalou P, Eckert H, Damy L, Constanty F, Majello S, Bitetti A, Graindorge A, Shkumatava A. RNA. 2019 Aug;25(8):897-904. doi: 10.1261/rna.069484.118. Epub 2019 May 1. PubMed
A High-Throughput Platform to Identify Small-Molecule Inhibitors of CRISPR-Cas9. Maji B, Gangopadhyay SA, Lee M, Shi M, Wu P, Heler R, Mok B, Lim D, Siriwardena SU, Paul B, Dancik V, Vetere A, Mesleh MF, Marraffini LA, Liu DR, Clemons PA, Wagner BK, Choudhary A. Cell. 2019 May 2;177(4):1067-1079.e19. doi: 10.1016/j.cell.2019.04.009. PubMed
PPM1D mutations silence NAPRT gene expression and confer NAMPT inhibitor sensitivity in glioma. Fons NR, Sundaram RK, Breuer GA, Peng S, McLean RL, Kalathil AN, Schmidt MS, Carvalho DM, Mackay A, Jones C, Carcaboso AM, Nazarian J, Berens ME, Brenner C, Bindra RS. Nat Commun. 2019 Aug 22;10(1):3790. doi: 10.1038/s41467-019-11732-6. PubMed
A role for alternative end-joining factors in homologous recombination and genome editing in Chinese hamster ovary cells. Bosshard S, Duroy PO, Mermod N. DNA Repair (Amst). 2019 Oct;82:102691. doi: 10.1016/j.dnarep.2019.102691. Epub 2019 Aug 15. PubMed
Characterization and mutagenesis of Chinese hamster ovary cells endogenous retroviruses to inactivate viral particle release. Duroy PO, Bosshard S, Schmid-Siegert E, Neuenschwander S, Arib G, Lemercier P, Masternak J, Roesch L, Buron F, Girod PA, Xenarios I, Mermod N. Biotechnol Bioeng. 2020 Feb;117(2):466-485. doi: 10.1002/bit.27200. Epub 2019 Nov 12. PubMed
TraFo-CRISPR: Enhanced Genome Engineering by Transient Foamy Virus Vector-Mediated Delivery of CRISPR/Cas9 Components. Lindel F, Dodt CR, Weidner N, Noll M, Bergemann F, Behrendt R, Fischer S, Dietrich J, Cartellieri M, Hamann MV, Lindemann D. Mol Ther Nucleic Acids. 2019 Dec 6;18:708-726. doi: 10.1016/j.omtn.2019.10.006. Epub 2019 Oct 17. PubMed
Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer. Mahendra C, Christie KA, Osuna BA, Pinilla-Redondo R, Kleinstiver BP, Bondy-Denomy J. Nat Microbiol. 2020 Apr;5(4):620-629. doi: 10.1038/s41564-020-0692-2. Epub 2020 Mar 26. PubMed

Associated Plasmids
Listeria Phages Induce Cas9 Degradation to Protect Lysogenic Genomes. Osuna BA, Karambelkar S, Mahendra C, Christie KA, Garcia B, Davidson AR, Kleinstiver BP, Kilcher S, Bondy-Denomy J. Cell Host Microbe. 2020 Apr 18. pii: S1931-3128(20)30190-6. doi: 10.1016/j.chom.2020.04.001. PubMed

Associated Plasmids
Tagging Proteins with Fluorescent Reporters Using the CRISPR/Cas9 System and Double-Stranded DNA Donors. Geny S, Pichard S, Brion A, Renaud JB, Jacquemin S, Concordet JP, Poterszman A. Methods Mol Biol. 2021;2247:39-57. doi: 10.1007/978-1-0716-1126-5_3. PubMed
Gene Tagging with the CRISPR-Cas9 System to Facilitate Macromolecular Complex Purification. Geny S, Pichard S, Poterszman A, Concordet JP. Methods Mol Biol. 2021;2305:153-174. doi: 10.1007/978-1-0716-1406-8_8. PubMed
DNA templates with blocked long 3' end single-stranded overhangs (BL3SSO) promote bona fide Cas9-stimulated homology-directed repair of long transgenes into endogenous gene loci. Bandyopadhyay S, Douglass J, Kapell S, Khan N, Feitosa-Suntheimer F, Klein JA, Temple J, Brown-Culbertson J, Tavares AH, Saeed M, Lau NC. G3 (Bethesda). 2021 May 14. pii: 6275753. doi: 10.1093/g3journal/jkab169. PubMed
Boosting targeted genome editing using the hei-tag. Thumberger T, Tavhelidse-Suck T, Gutierrez-Triana JA, Cornean A, Medert R, Welz B, Freichel M, Wittbrodt J. Elife. 2022 Mar 25;11. pii: 70558. doi: 10.7554/eLife.70558. PubMed

Associated Plasmids
Targeting double-strand break indel byproducts with secondary guide RNAs improves Cas9 HDR-mediated genome editing efficiencies. Bodai Z, Bishop AL, Gantz VM, Komor AC. Nat Commun. 2022 May 9;13(1):2351. doi: 10.1038/s41467-022-29989-9. PubMed
Increased migration and motility in XIAP-null cells mediated by the C-RAF protein kinase. Russell LG, Davis LAK, Hunter JE, Perkins ND, Kenneth NS. Sci Rep. 2022 May 13;12(1):7943. doi: 10.1038/s41598-022-11438-8. PubMed
DUSP2 deletion with CRISPR/Cas9 promotes Mauthner cell axonal regeneration at the early stage of zebrafish. Shao GJ, Wang XL, Wei ML, Ren DL, Hu B. Neural Regen Res. 2023 Mar;18(3):577-581. doi: 10.4103/1673-5374.350208. PubMed
Targeting Krebs-cycle-deficient renal cell carcinoma with Poly ADP-ribose polymerase inhibitors and low-dose alkylating chemotherapy. Ueno D, Vasquez JC, Sule A, Liang J, van Doorn J, Sundaram R, Friedman S, Caliliw R, Ohtake S, Bao X, Li J, Ye H, Boyd K, Huang RR, Dodson J, Boutros P, Bindra RS, Shuch B. Oncotarget. 2022 Sep 14;13:1054-1067. doi: 10.18632/oncotarget.28273. eCollection 2022. PubMed
Allele-Specific Disruption of a Common STAT3 Autosomal Dominant Allele Is Not Sufficient to Restore Downstream Signaling in Patient-Derived T Cells. Konig S, Fliegauf M, Rhiel M, Grimbacher B, Cornu TI, Cathomen T, Mussolino C. Genes (Basel). 2022 Oct 20;13(10):1912. doi: 10.3390/genes13101912. PubMed
A general approach to identify cell-permeable and synthetic anti-CRISPR small molecules. Lim D, Zhou Q, Cox KJ, Law BK, Lee M, Kokkonda P, Sreekanth V, Pergu R, Chaudhary SK, Gangopadhyay SA, Maji B, Lai S, Amako Y, Thompson DB, Subramanian HKK, Mesleh MF, Dancik V, Clemons PA, Wagner BK, Woo CM, Church GM, Choudhary A. Nat Cell Biol. 2022 Dec;24(12):1766-1775. doi: 10.1038/s41556-022-01005-8. Epub 2022 Nov 17. PubMed
The domed architecture of Giardias ventral disc is necessary for attachment and host pathogenesis. Hagen KD, Nosala C, Hilton N, Mueller A, Holthaus D, Laue M, Klotz C, Aebischer A, Dawson SC. bioRxiv [Preprint]. 2023 Sep 27:2023.07.02.547441. doi: 10.1101/2023.07.02.547441. PubMed
The Insulin Receptor and Insulin like Growth Factor Receptor 5' UTRs Support Translation Initiation Independently of EIF4G1. Clark NK, Harris MT, Dahl WB, Knotts Z, Marr MT 2nd. Mol Cell Biol. 2023;43(10):485-499. doi: 10.1080/10985549.2023.2255120. Epub 2023 Oct 11. PubMed
The intrinsically disordered region of eIF5B stimulates IRES usage and nucleates biological granule formation. Harris MT, Marr MT 2nd. Cell Rep. 2023 Oct 31;42(10):113283. doi: 10.1016/j.celrep.2023.113283. Epub 2023 Oct 19. PubMed

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