Skip to main content
This website uses cookies to ensure you get the best experience. By continuing to use this site, you agree to the use of cookies.

Please note: Your browser does not support the features used on Addgene's website. You may not be able to create an account or request plasmids through this website until you upgrade your browser. Learn more

Please note: Your browser does not fully support some of the features used on Addgene's website. If you run into any problems registering, depositing, or ordering please contact us at [email protected] Learn more

pAAV-CAG-tdTomato (codon diversified) Citations (49)

Originally described in: Accessory plasmids for optogenetics

Articles Citing pAAV-CAG-tdTomato (codon diversified)

Presymptomatic change in microRNAs modulates Tau pathology. Sharma S, Khadimallah I, Corya AW, Ali YO, Rao X, Liu Y, Lu HC. Sci Rep. 2018 Jun 18;8(1):9251. doi: 10.1038/s41598-018-27527-6. PubMed
TRPM7 Is Required for Normal Synapse Density, Learning, and Memory at Different Developmental Stages. Liu Y, Chen C, Liu Y, Li W, Wang Z, Sun Q, Zhou H, Chen X, Yu Y, Wang Y, Abumaria N. Cell Rep. 2018 Jun 19;23(12):3480-3491. doi: 10.1016/j.celrep.2018.05.069. PubMed
Structural Connectivity of the Anterior Cingulate Cortex, Claustrum, and the Anterior Insula of the Mouse. Qadir H, Krimmel SR, Mu C, Poulopoulos A, Seminowicz DA, Mathur BN. Front Neuroanat. 2018 Nov 26;12:100. doi: 10.3389/fnana.2018.00100. eCollection 2018. PubMed
Punishment-Predictive Cues Guide Avoidance through Potentiation of Hypothalamus-to-Habenula Synapses. Trusel M, Nuno-Perez A, Lecca S, Harada H, Lalive AL, Congiu M, Takemoto K, Takahashi T, Ferraguti F, Mameli M. Neuron. 2019 Apr 3;102(1):120-127.e4. doi: 10.1016/j.neuron.2019.01.025. Epub 2019 Feb 11. PubMed
A Retino-retinal Projection Guided by Unc5c Emerged in Species with Retinal Waves. Murcia-Belmonte V, Coca Y, Vegar C, Negueruela S, de Juan Romero C, Valino AJ, Sala S, DaSilva R, Kania A, Borrell V, Martinez LM, Erskine L, Herrera E. Curr Biol. 2019 Apr 1;29(7):1149-1160.e4. doi: 10.1016/j.cub.2019.02.052. Epub 2019 Mar 21. PubMed
Functional Local Proprioceptive Feedback Circuits Initiate and Maintain Locomotor Recovery after Spinal Cord Injury. Takeoka A, Arber S. Cell Rep. 2019 Apr 2;27(1):71-85.e3. doi: 10.1016/j.celrep.2019.03.010. PubMed
Selective targeting of unipolar brush cell subtypes by cerebellar mossy fibers. Balmer TS, Trussell LO. Elife. 2019 Apr 17;8. pii: 44964. doi: 10.7554/eLife.44964. PubMed
Using a barcoded AAV capsid library to select for clinically relevant gene therapy vectors. Pekrun K, De Alencastro G, Luo QJ, Liu J, Kim Y, Nygaard S, Galivo F, Zhang F, Song R, Tiffany MR, Xu J, Hebrok M, Grompe M, Kay MA. JCI Insight. 2019 Nov 14;4(22). pii: 131610. doi: 10.1172/jci.insight.131610. PubMed

Associated Plasmids

Systemic Delivery of Genes to Retina Using Adeno-Associated Viruses. Simpson CP, Bolch SN, Zhu P, Weidert F, Dinculescu A, Lobanova ES. Adv Exp Med Biol. 2019;1185:109-112. doi: 10.1007/978-3-030-27378-1_18. PubMed
Tracking Adeno-Associated Virus Capsid Evolution by High-Throughput Sequencing. de Alencastro G, Pekrun K, Valdmanis P, Tiffany M, Xu J, Kay MA. Hum Gene Ther. 2020 May;31(9-10):553-564. doi: 10.1089/hum.2019.339. Epub 2020 Mar 5. PubMed
RatHat: A Self-Targeting Printable Brain Implant System. Allen LM, Jayachandran M, Viena TD, Su M, McNaughton BL, Allen TA. eNeuro. 2020 Apr 13;7(2). pii: ENEURO.0538-19.2020. doi: 10.1523/ENEURO.0538-19.2020. Print 2020 Mar/Apr. PubMed
A Novel Next-Generation Sequencing and Analysis Platform to Assess the Identity of Recombinant Adeno-Associated Viral Preparations from Viral DNA Extracts. Guerin K, Rego M, Bourges D, Ersing I, Haery L, Harten DeMaio K, Sanders E, Tasissa M, Kostman M, Tillgren M, Makana Hanley L, Mueller I, Mitsopoulos A, Fan M. Hum Gene Ther. 2020 Jun;31(11-12):664-678. doi: 10.1089/hum.2019.277. Epub 2020 Apr 15. PubMed
Spectro-temporal encoded multiphoton microscopy and fluorescence lifetime imaging at kilohertz frame-rates. Karpf S, Riche CT, Di Carlo D, Goel A, Zeiger WA, Suresh A, Portera-Cailliau C, Jalali B. Nat Commun. 2020 Apr 28;11(1):2062. doi: 10.1038/s41467-020-15618-w. PubMed
Intraarticular Adeno-Associated Virus Serotype AAV-PHP.S-Mediated Chemogenetic Targeting of Knee-Innervating Dorsal Root Ganglion Neurons Alleviates Inflammatory Pain in Mice. Chakrabarti S, Pattison LA, Doleschall B, Rickman RH, Blake H, Callejo G, Heppenstall PA, Smith ESJ. Arthritis Rheumatol. 2020 Oct;72(10):1749-1758. doi: 10.1002/art.41314. Epub 2020 Aug 11. PubMed
Cell Types Promoting Goosebumps Form a Niche to Regulate Hair Follicle Stem Cells. Shwartz Y, Gonzalez-Celeiro M, Chen CL, Pasolli HA, Sheu SH, Fan SM, Shamsi F, Assaad S, Lin ET, Zhang B, Tsai PC, He M, Tseng YH, Lin SJ, Hsu YC. Cell. 2020 Aug 6;182(3):578-593.e19. doi: 10.1016/j.cell.2020.06.031. Epub 2020 Jul 16. PubMed
Topographic gradients define the projection patterns of the claustrum core and shell in mice. Marriott BA, Do AD, Zahacy R, Jackson J. J Comp Neurol. 2021 May 1;529(7):1607-1627. doi: 10.1002/cne.25043. Epub 2020 Oct 4. PubMed
Methods Matter: Standard Production Platforms for Recombinant AAV Produce Chemically and Functionally Distinct Vectors. Rumachik NG, Malaker SA, Poweleit N, Maynard LH, Adams CM, Leib RD, Cirolia G, Thomas D, Stamnes S, Holt K, Sinn P, May AP, Paulk NK. Mol Ther Methods Clin Dev. 2020 May 22;18:98-118. doi: 10.1016/j.omtm.2020.05.018. eCollection 2020 Sep 11. PubMed

Associated Plasmids

Hippocampal inputs engage CCK+ interneurons to mediate endocannabinoid-modulated feed-forward inhibition in the prefrontal cortex. Liu X, Dimidschstein J, Fishell G, Carter AG. Elife. 2020 Oct 9;9. pii: 55267. doi: 10.7554/eLife.55267. PubMed

Associated Plasmids

CNS Transduction Benefits of AAV-PHP.eB over AAV9 Are Dependent on Administration Route and Mouse Strain. Mathiesen SN, Lock JL, Schoderboeck L, Abraham WC, Hughes SM. Mol Ther Methods Clin Dev. 2020 Oct 20;19:447-458. doi: 10.1016/j.omtm.2020.10.011. eCollection 2020 Dec 11. PubMed
Mass Generation, Neuron Labeling, and 3D Imaging of Minibrains. Govindan S, Batti L, Osterop SF, Stoppini L, Roux A. Front Bioeng Biotechnol. 2021 Jan 7;8:582650. doi: 10.3389/fbioe.2020.582650. eCollection 2020. PubMed
Circuit organization of the excitatory sensorimotor loop through hand/forelimb S1 and M1. Yamawaki N, Raineri Tapies MG, Stults A, Smith GA, Shepherd GM. Elife. 2021 Apr 14;10. pii: 66836. doi: 10.7554/eLife.66836. PubMed
Diversity in striatal synaptic circuits arises from distinct embryonic progenitor pools in the ventral telencephalon. van Heusden F, Macey-Dare A, Gordon J, Krajeski R, Sharott A, Ellender T. Cell Rep. 2021 Apr 27;35(4):109041. doi: 10.1016/j.celrep.2021.109041. PubMed
Dysregulation of the mesoprefrontal dopamine circuit mediates an early-life stress-induced synaptic imbalance in the prefrontal cortex. Oh WC, Rodriguez G, Asede D, Jung K, Hwang IW, Ogelman R, Bolton MM, Kwon HB. Cell Rep. 2021 May 4;35(5):109074. doi: 10.1016/j.celrep.2021.109074. PubMed
Co-occupancy identifies transcription factor co-operation for axon growth. Venkatesh I, Mehra V, Wang Z, Simpson MT, Eastwood E, Chakraborty A, Beine Z, Gross D, Cabahug M, Olson G, Blackmore MG. Nat Commun. 2021 May 5;12(1):2555. doi: 10.1038/s41467-021-22828-3. PubMed
Spatially patterned excitatory neuron subtypes and projections of the claustrum. Erwin SR, Bristow BN, Sullivan KE, Kendrick RM, Marriott B, Wang L, Clements J, Lemire AL, Jackson J, Cembrowski MS. Elife. 2021 Aug 16;10. pii: 68967. doi: 10.7554/eLife.68967. PubMed
Gated feedforward inhibition in the frontal cortex releases goal-directed action. Kim JH, Ma DH, Jung E, Choi I, Lee SH. Nat Neurosci. 2021 Oct;24(10):1452-1464. doi: 10.1038/s41593-021-00910-9. Epub 2021 Aug 19. PubMed
A distributed circuit for associating environmental context with motor choice in retrosplenial cortex. Franco LM, Goard MJ. Sci Adv. 2021 Aug 25;7(35). pii: 7/35/eabf9815. doi: 10.1126/sciadv.abf9815. Print 2021 Aug. PubMed
ExBoX - a simple Boolean exclusion strategy to drive expression in neurons. Ubina T, Vahedi-Hunter T, Agnew-Svoboda W, Wong W, Gupta A, Santhakumar V, Riccomagno MM. J Cell Sci. 2021 Oct 15;134(20). pii: 272538. doi: 10.1242/jcs.257212. Epub 2021 Oct 20. PubMed

Associated Plasmids

Transcriptional and functional divergence in lateral hypothalamic glutamate neurons projecting to the lateral habenula and ventral tegmental area. Rossi MA, Basiri ML, Liu Y, Hashikawa Y, Hashikawa K, Fenno LE, Kim YS, Ramakrishnan C, Deisseroth K, Stuber GD. Neuron. 2021 Dec 1;109(23):3823-3837.e6. doi: 10.1016/j.neuron.2021.09.020. Epub 2021 Oct 7. PubMed
An active vesicle priming machinery suppresses axon regeneration upon adult CNS injury. Hilton BJ, Husch A, Schaffran B, Lin TC, Burnside ER, Dupraz S, Schelski M, Kim J, Muller JA, Schoch S, Imig C, Brose N, Bradke F. Neuron. 2022 Jan 5;110(1):51-69.e7. doi: 10.1016/j.neuron.2021.10.007. Epub 2021 Oct 26. PubMed
Inhibitory control of synaptic signals preceding locomotion in mouse frontal cortex. Zhang CL, Koukouli F, Allegra M, Ortiz C, Kao HL, Maskos U, Changeux JP, Schmidt-Hieber C. Cell Rep. 2021 Nov 23;37(8):110035. doi: 10.1016/j.celrep.2021.110035. PubMed
TREM2 interacts with TDP-43 and mediates microglial neuroprotection against TDP-43-related neurodegeneration. Xie M, Liu YU, Zhao S, Zhang L, Bosco DB, Pang YP, Zhong J, Sheth U, Martens YA, Zhao N, Liu CC, Zhuang Y, Wang L, Dickson DW, Mattson MP, Bu G, Wu LJ. Nat Neurosci. 2022 Jan;25(1):26-38. doi: 10.1038/s41593-021-00975-6. Epub 2021 Dec 16. PubMed
Virally encoded connectivity transgenic overlay RNA sequencing (VECTORseq) defines projection neurons involved in sensorimotor integration. Cheung V, Chung P, Bjorni M, Shvareva VA, Lopez YC, Feinberg EH. Cell Rep. 2021 Dec 21;37(12):110131. doi: 10.1016/j.celrep.2021.110131. PubMed
A vibrissa pathway that activates the limbic system. Elbaz M, Callado Perez A, Demers M, Zhao S, Foo C, Kleinfeld D, Deschenes M. Elife. 2022 Feb 10;11. pii: 72096. doi: 10.7554/eLife.72096. PubMed
Cerebellar modulation of memory encoding in the periaqueductal grey and fear behaviour. Lawrenson C, Paci E, Pickford J, Drake RAR, Lumb BM, Apps R. Elife. 2022 Mar 15;11. pii: 76278. doi: 10.7554/eLife.76278. PubMed
A multidimensional coding architecture of the vagal interoceptive system. Zhao Q, Yu CD, Wang R, Xu QJ, Dai Pra R, Zhang L, Chang RB. Nature. 2022 Mar;603(7903):878-884. doi: 10.1038/s41586-022-04515-5. Epub 2022 Mar 16. PubMed

Associated Plasmids

Large-scale two-photon calcium imaging in freely moving mice. Zong W, Obenhaus HA, Skytoen ER, Eneqvist H, de Jong NL, Vale R, Jorge MR, Moser MB, Moser EI. Cell. 2022 Mar 31;185(7):1240-1256.e30. doi: 10.1016/j.cell.2022.02.017. Epub 2022 Mar 18. PubMed
Midbrain projection to the basolateral amygdala encodes anxiety-like but not depression-like behaviors. Morel C, Montgomery SE, Li L, Durand-de Cuttoli R, Teichman EM, Juarez B, Tzavaras N, Ku SM, Flanigan ME, Cai M, Walsh JJ, Russo SJ, Nestler EJ, Calipari ES, Friedman AK, Han MH. Nat Commun. 2022 Mar 22;13(1):1532. doi: 10.1038/s41467-022-29155-1. PubMed
Selective plasticity of callosal neurons in the adult contralesional cortex following murine traumatic brain injury. Empl L, Chovsepian A, Chahin M, Kan WYV, Fourneau J, Van Steenbergen V, Weidinger S, Marcantoni M, Ghanem A, Bradley P, Conzelmann KK, Cai R, Ghasemigharagoz A, Erturk A, Wagner I, Kreutzfeldt M, Merkler D, Liebscher S, Bareyre FM. Nat Commun. 2022 May 12;13(1):2659. doi: 10.1038/s41467-022-29992-0. PubMed
Designing AAV Vectors for Monitoring the Subtle Calcium Fluctuations of Inferior Olive Network in vivo. Dorgans K, Guo D, Kurima K, Wickens J, Uusisaari MY. Front Cell Neurosci. 2022 Apr 27;16:825056. doi: 10.3389/fncel.2022.825056. eCollection 2022. PubMed
Whole-Brain Wiring Diagram of Oxytocin System in Adult Mice. Son S, Manjila SB, Newmaster KT, Wu YT, Vanselow DJ, Ciarletta M, Anthony TE, Cheng KC, Kim Y. J Neurosci. 2022 Jun 22;42(25):5021-5033. doi: 10.1523/JNEUROSCI.0307-22.2022. Epub 2022 May 23. PubMed
Leucine-Rich Repeats and Transmembrane Domain 2 Controls Protein Sorting in the Striatal Projection System and Its Deficiency Causes Disturbances in Motor Responses and Monoamine Dynamics. Ichise M, Sakoori K, Katayama KI, Morimura N, Yamada K, Ozawa H, Matsunaga H, Hatayama M, Aruga J. Front Mol Neurosci. 2022 May 9;15:856315. doi: 10.3389/fnmol.2022.856315. eCollection 2022. PubMed
Brain-wide analysis of the supraspinal connectome reveals anatomical correlates to functional recovery after spinal injury. Wang Z, Romanski A, Mehra V, Wang Y, Brannigan M, Campbell BC, Petsko GA, Tsoulfas P, Blackmore MG. Elife. 2022 Jul 15;11. pii: 76254. doi: 10.7554/eLife.76254. PubMed
Analysis of the distribution of vagal afferent projections from different peripheral organs to the nucleus of the solitary tract in rats. Bassi JK, Connelly AA, Butler AG, Liu Y, Ghanbari A, Farmer DGS, Jenkins MW, Melo MR, McDougall SJ, Allen AM. J Comp Neurol. 2022 Dec;530(17):3072-3103. doi: 10.1002/cne.25398. Epub 2022 Aug 21. PubMed
The role of somatosensory innervation of adipose tissues. Wang Y, Leung VH, Zhang Y, Nudell VS, Loud M, Servin-Vences MR, Yang D, Wang K, Moya-Garzon MD, Li VL, Long JZ, Patapoutian A, Ye L. Nature. 2022 Sep;609(7927):569-574. doi: 10.1038/s41586-022-05137-7. Epub 2022 Aug 31. PubMed

Associated Plasmids

Gene therapy using human FMRP isoforms driven by the human FMR1 promoter rescues fragile X syndrome mouse deficits. Jiang Y, Han L, Meng J, Wang Z, Zhou Y, Yuan H, Xu H, Zhang X, Zhao Y, Lu J, Xu H, Zhang C, Zhang YW. Mol Ther Methods Clin Dev. 2022 Oct 7;27:246-258. doi: 10.1016/j.omtm.2022.10.002. eCollection 2022 Dec 8. PubMed
Sex bias in social deficits, neural circuits and nutrient demand in Cttnbp2 autism models. Yen TL, Huang TN, Lin MH, Hsu TT, Lu MH, Shih PY, Ellegood J, Lerch J, Hsueh YP. Brain. 2022 Nov 17:awac429. doi: 10.1093/brain/awac429. PubMed
Constitutive 5-HT2C receptor knock-out facilitates fear extinction through altered activity of a dorsal raphe-bed nucleus of the stria terminalis pathway. Suss ST, Olbricht LM, Herlitze S, Spoida K. Transl Psychiatry. 2022 Nov 19;12(1):487. doi: 10.1038/s41398-022-02252-x. PubMed
Rostral and caudal basolateral amygdala engage distinct circuits in the prelimbic and infralimbic prefrontal cortex. Manoocheri K, Carter AG. Elife. 2022 Dec 7;11:e82688. doi: 10.7554/eLife.82688. PubMed

If you have published an article using this material, please email us at [email protected] to have your article added to this page.