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Enter a sequence to perform a BLAST-based search of Addgene plasmid sequence databases.

In Category

We narrowed to 90 results for: BASE;

Showing: 21 - 40 of 90 results

  1. CRISPR Plasmids - Tagging

    Type
    Collection
    ...Browse CRISPR Plasmids By Function Genome Editing Cut Base Edit Nick Prime Edit Transcriptional Regulation ...Myers labs have deposited plasmids for a CRISPR-based system to add a tag (currently using FLAG) to endogenous... A vector containing Cas9 and a validated gRNA, based on the Zhang lab's PX458 . Multiple gRNA plasmids... deposited the PITCh system plasmids for CRISPR-based knock-in of EGFP-2A-PuroR cassette to the C-terminus...two components: An all-in-one CRISPR/Cas9 vector based on the Zhang lab's PX330 , simultaneously targeting... has developed a simple and scalable CRISPR/Cas-based method to tag endogenous proteins by using donor...

  2. CRISPR Plasmids - C. elegans

    Type
    Collection
    ...Browse CRISPR Plasmids By Function Genome Editing Cut Base Edit Nick Prime Edit Transcriptional Regulation ...double-strand break (DSB) at a specific location based on a gRNA-defined target sequence. DSBs are preferentially...Expression Vectors Select a gRNA expression plasmid based on factors such as selectable marker or cloning ...

  3. Plant Plasmids and Resources

    Type
    Collection
    ...in a new window) - Database of gene expression profiles in Arabidopsis thaliana based on RNA-seq analysis...Toolkit for Plants includes CRISPR/Cas nucleases, base editors, gRNA backbones, and promoters for expression...Carrington. JoinTRV , an improved vector system based on tobacco rattle virus (TRV) that simplifies gene...Blog Posts RUBY-Red Siliques CRISPR-mediated Plant Base Editors Save Time with Transient Plant Leaf Transformations...(Link opens in a new window) - TAIR includes a database of genetic and molecular biology data for Arabidopsis...public web resource composed by a collection of databases, computational and experimental resources that...

  4. CRISPR Plasmids - RNA Editing

    Type
    Collection
    ...CRISPR plasmids based on Cas13 designed to precisely edit RNA targets....Browse CRISPR Plasmids By Function Genome Editing Cut Base Edit Nick Prime Edit Transcriptional Regulation ...

  5. New England Biolabs Cell-Imaging Plasmid Collection

    Type
    Collection
    ...Biolabs offers non-toxic protein labeling systems based on SNAP-, CLIP-, ACP-, and MCP-tags for visualization...-tag, and GFP . Technology SNAP-tag SNAP-tag is based on the human O6-alkylguanine-DNA-alkyltransferase...MCP tags ACP- and MCP-tags are small protein tags based on the acyl carrier protein. Substrates are derivatives...

  6. CRISPR References and Information

    Type
    Collection
    ...off-target evaluation for base edits using adenine (ABE) and cytosine (CBE) base editors. Includes a wide...e.g. Cas9, Cas12a) and noncleaving nucleases (e.g. base editing). Developed by the Luca Pinello Lab (Link...2019) (Link opens in a new window) . MAGeCK Model-based Analysis of Genome-wide CRISPR/Cas9 Knockout (MAGeCK...window) A webtool that uses deep learning models for base editor gRNA design and efficiency prediction. Developed...Juan L. Mateo (Link opens in a new window) Labs. ACEofBASEs (Link opens in a new window) Identification of...supports a wide selection of organisms. From the Database Center for Life Science (DBCLS) in Japan. Developed...

  7. Lentivirus Plasmids

    Type
    Collection
    ...when working with lentivirus: these viruses are based on HIV-1, which may require additional lab biosafety...A Envelope VSV-G recommended for the FELIX (FIV-based) system Nolan 22502 pCEP4-tat N/A Packaging Expression... Puro selection. Shih 25737 pSLIK-Hygro 3rd Tet-based inducible shRNA or cDNA expression, gateway plasmid...mir-RUP-PheS 3rd Lentiviral shRNA plasmid (pGIPz based) for inducible knockdown, multicistronic design ...transfer plasmid are size (i.e., a limited number of basepairs of nucleic acid can fit into a viral particle)...

  8. CRISPR Plasmids - Parasites

    Type
    Collection
    ...Browse CRISPR Plasmids By Function Genome Editing Cut Base Edit Nick Prime Edit Transcriptional Regulation ...double-strand break (DSB) at a specific location based on a gRNA-defined target sequence. DSBs are preferentially...

  9. CRISPR Plasmids - Double-Strand Break (Cut)

    Type
    Collection
    ...Browse CRISPR Plasmids By Function Genome Editing Cut Base Edit Nick Prime Edit Transcriptional Regulation ...double-strand break (DSB) at a specific location based on a gRNA-defined target sequence. DSBs are preferentially...

  10. Neurodegeneration Research Collection

    Type
    Collection
    ...Acad Sci U S A. 2023 Aug 22. Use a lentiviral FRET-based reporter to study tau seeding in mammalian cells...Cas9 in astrocytes. Endo et al Science. 2022 Nov 4. Base edit human mitochondrial DNA using mitoBEs . Yi ... information on Addgene's collection of plasmid-based antibodies, including monoclonal antibodies, scFvs...elegans. Yemini et al. Cell. 2021 Jan 7. Use a FRET-based method to monitor structural transitions in protein...

  11. Zhang Lab CRISPR Page

    Type
    Collection
    ...before the sgRNA scaffold. The oligos are designed based on the target site sequence (20bp) and need to be... into the CRISPR array. The oligos are designed based on the target site sequence (30bp) and need to be...before the sgRNA scaffold. The oligos are designed based on the target site sequence (21-22bp) and need to... of annealed and phosphorylated oligos designed based on the target site sequence (20bp). CRISPR-Cas9 ... of annealed and phosphorylated oligos designed based on the target site sequence (20bp). #60230 - AAV... of annealed and phosphorylated oligos designed based on the target site sequence (20bp). Return to top...activate all known coding isoforms form the RefSeq database (23,430 isoforms) for gain-of-function screening...

  12. Antibody Guide

    Type
    Collection
    ...increase flexibility or specificity in antibody-based methods. Antibodies can recognize and bind other...produce the same antibody clone, or from plasmid-based expression. Monoclonal antibodies are necessary .... The complexity of this can vary significantly based on the antibody and conjugate chosen. Signal Amplification...assay. Overview of Antibody Applications Antibody-based applications can be generally classed into four ...Enzyme-linked immunosorbent assay (ELISA) is a plate-based assay that uses standard curves to quantify exact...strategy. Figure 5: Immunoprecipitation using bead-based antibody capture to isolate specific proteins from... cells are then slotted in a specific direction based on the emission(s) read by the machine. Controls...

  13. SARS-CoV-2 Pseudotyped Virus

    Type
    Collection
    ... Addgene's collection: HIV-based lentiviral particles Murine leukemia-based retroviral particles Vesicular...

  14. Botman-Teusink Yeast FP Collection

    Type
    Collection
    ...codon-optimized fluorescent proteins. These vectors are based on the pFA6a-link plasmid (Sheff et al., 2004; Lee...overexpression of codon-optimized FPs in yeast. Vectors are based on the pDRF1 plasmid (Loqué et al., 2007) containing...

  15. Tetracycline Inducible Expression

    Type
    Collection
    ...Tet-Advanced transactivator (developed by Clontech, based on Resnitzky et al., 1994). TRE3G promoter : also...Tet-On inducible RNAi with miR-E (miR-30 variant)-based backbone rtTA-Advanced TRE3G Johannes Zuber 60495...vector for tet-inducible Cas9-2A-EGFP expression. Based on LentiCRISPR v2 . Adam Karpf 167935 pLenti-tetON-KRAB-dCas9...dCas13d-dsRBD-APEX2 RNA-protein interaction mapping via Cas13-based APEX targeting Alice Ting 85040 pK170.AAV-TRE-Cre-WPRE...Schiedlmeier, B. (2011). Retroviral and transposon-based tet-regulated all-in-one vectors with reduced background...

  16. AAV for Neuronal Tracing

    Type
    Collection
    ...Tracing These AAV encode tools for rabies virus-based monosynaptic tracing. These AAV can be used with...B19G AAV1 Wickersham Introduction to Rabies Virus-based Monosynaptic Tracing The core idea of the system...

  17. Rett Syndrome

    Type
    Collection
    ...CRISPR resources can be found below: Base Editing RNA Editing CRISPR-based DNA methylation editing system -...occurs. Diagnosis of Rett syndrome is currently based on specific clinical diagnostic criteria, defined...the search bar or sort buttons to find plasmids based on: Expression system (mammalian or bacterial) Insert...Resources Research Databases (Link opens in a new window) InterRett - international online database of clinical...syndrome (Link opens in a new window) RettBase - MECP2 mutation database (Link opens in a new window) OMIM...: 16832102 Krishnaraj et al. 2017. RettBASE: Rett syndrome database update. Hum Mutat . 38, 922–931. (...

  18. TALEN Plasmids and Kits

    Type
    Collection
    ...vectors and a reporter vector for mammalian cell-based validation assay that are designed for use with ...through in vitro transcription as an alternative. Based on transient double-selection of transfected cells...TALEN kit. This backbone is suitable for the TALEN-based generation of germline mutations in Bombyx mori ...

  19. CRISPR Plasmids - Empty gRNA Vectors

    Type
    Collection
    ...Browse CRISPR Plasmids By Function Genome Editing Cut Base Edit Nick Prime Edit Transcriptional Regulation ... your system, you can search or sort this table based on: Your particular expression system , eg. Mammalian... and FokI-dCas9. Yamamoto Multiplex CRISPR/Cas9-based genome engineering from a single lentiviral vector...System Mammalian MultiSite Gateway recombination-based cloning of complex polycistronic lentiviruses. Can...Genome Editing in Monocot and Dicot Plants Plant PCR-based procedure to rapidly generate multiple sgRNA expression...available for use in this Golden Gate and Gateway based assembly method: plasmids for assembly of single... cassettes using Golden Gate ligation into Tol2-based pGGDestTol2LC vector. Uses five distinct zebrafish...

  20. CRISPR Plasmids - Prime Edit

    Type
    Collection
    ...Browse CRISPR Plasmids By Function Genome Editing Cut Base Edit Nick Prime Edit Transcriptional Regulation ...below. Use the search bar to find a gRNA vector based on expression system, promoter, the type of gRNA...
Showing: 21 - 40 of 90 results