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pET28a_6HT-TBP6.7(WT)

Plasmid

#112720

Purpose

Wild-type TBP6.7 was one of the first evolved TAR-binding proteins to bind with exceptional affinity. It was this protein that was used to obtain co-crystals with WT TAR RNA.

Depositor

Joseph Wedekind

Article

Belashov et al Nucleic Acids Res. 2018 Jul 27;46(13):64

Insert

6His-TEV-TBP6.7(WT)

Use

Tags

6His-TEV

Expression

Bacterial

Mutation

Promoter

T7

Available since

Aug. 8, 2018

Availability

Academic Institutions and Nonprofits only

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pET28a_6HT-TBP6.7(R47A)

Plasmid

#112722

Purpose

Arg47 within TBP6.7 is the most critical residue in terms of forming interactions with WT TAR. Mutating this amino acid to Ala results in ~600-fold reduction in Kd.

Depositor

Joseph Wedekind

Article

Belashov et al Nucleic Acids Res. 2018 Jul 27;46(13):64

Insert

6His-TEV-TBP6.7(R47A)

Use

Tags

6His-TEV

Expression

Bacterial

Mutation

R47A

Promoter

T7

Available since

Aug. 8, 2018

Availability

Academic Institutions and Nonprofits only

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pET28a_6HT-TBP6.7(R47K)

Plasmid

#112723

Purpose

Arg47 of TBP6.7 interacts with Hoogsteen edge of TAR's Gua26. Mutating this amino acid to Lys reduces binding to the WT TAR RNA ~330-fold.

Depositor

Joseph Wedekind

Article

Belashov et al Nucleic Acids Res. 2018 Jul 27;46(13):64

Insert

6His-TEV-TBP6.7(R47K)

Use

Tags

6His-TEV

Expression

Bacterial

Mutation

R47K

Promoter

T7

Available since

Aug. 8, 2018

Availability

Academic Institutions and Nonprofits only

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pET28a_6HT-TBP6.7(Q48A)

Plasmid

#112724

Purpose

Gln48 contacts the backbone of TAR RNA as well as mediates intramoecular interaction to stabilize the conformation of beta2-beta3 loop within TBP6.7.

Depositor

Joseph Wedekind

Article

Belashov et al Nucleic Acids Res. 2018 Jul 27;46(13):64

Insert

6His-TEV-TBP6.7(Q48A)

Use

Tags

6His-TEV

Expression

Bacterial

Mutation

Q48A

Promoter

T7

Available since

Aug. 8, 2018

Availability

Academic Institutions and Nonprofits only

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pET28a_6HT-TBP6.7(T50A)

Plasmid

#112727

Purpose

Lav-evolved amino acid T50 within TBPs is important in engaging intramolecularly to steer also lab-evolved R49 into conformation compatible binding to RNA.

Depositor

Joseph Wedekind

Article

Belashov et al Nucleic Acids Res. 2018 Jul 27;46(13):64

Insert

6His-TEV-TBP6.7(T50A)

Use

Tags

6His-TEV

Expression

Bacterial

Mutation

T50A

Promoter

T7

Available since

Aug. 8, 2018

Availability

Academic Institutions and Nonprofits only

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pET28a_6HT-TBP6.7(R52A)

Plasmid

#112729

Purpose

52nd position is Arg in both wild-type U1A and TBPs, but the RNA recognition by this residue in both types of proteins is fundamentally different.

Depositor

Joseph Wedekind

Article

Belashov et al Nucleic Acids Res. 2018 Jul 27;46(13):64

Insert

6His-TEV-TBP6.7(R52A)

Use

Tags

6His-TEV

Expression

Bacterial

Mutation

R52A

Promoter

T7

Available since

Aug. 8, 2018

Availability

Academic Institutions and Nonprofits only

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pET28a_6HT-TBP6.7(delta C-term)

Plasmid

#112731

Purpose

This mutant of TBP6.7 is lacking residues 91-98 at C-terminus, and was used to test the involvement of those residues in TAR recognition.

Depositor

Joseph Wedekind

Article

Belashov et al Nucleic Acids Res. 2018 Jul 27;46(13):64

Insert

6His-TEV-TBP6.7(delta C-term)

Use

Tags

6His-TEV

Expression

Bacterial

Mutation

delta C-term

Promoter

T7

Available since

Aug. 8, 2018

Availability

Academic Institutions and Nonprofits only

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CRY-GalVP16 (B695)

Plasmid

#92031

Purpose

Expresses CRY2 (full length, intact NLS) fusion with Gal4DBD(aa1-147) fused to VP16AD (truncated), downstream of mCherry-IRES.

Depositor

Chandra Tucker

Article

Pathak et al Nucleic Acids Res. 2017 Apr 20. doi: 10.

Insert

CRY2 (CRY2 Mustard Weed)

Use

Tags

GalBD-VP16AD

Expression

Mammalian

Mutation

Promoter

Available since

July 25, 2017

Availability

Academic Institutions and Nonprofits only

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pRB117.2

Plasmid

#181949

Purpose

aTc-inducible expression of NarL with N-terminal mNeonGreen fusion. Also contains mCherry under NarL-controlled promoter PdcuS

Depositor

Jeffrey Tabor

Article

Butcher et al Proc Natl Acad Sci U S A. 2022 Aug 30;11

Insert

mNG-NarL; mCherry; tetR (narL, AX04_RS23485 Synthetic, narL - E. coli)

Use

Tags

mNeonGreen

Expression

Bacterial

Mutation

See Depositor Comments Below

Promoter

mNG-NarL-PLtetO-1; mCherry-PdcuS; tetR-J23106

Available since

Oct. 26, 2022

Availability

Academic Institutions and Nonprofits only

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pRB113.2

Plasmid

#181948

Purpose

aTc-inducible expression of NarL with C-terminal mNeonGreen fusion. Also contains mCherry under NarL-controlled promoter PdcuS

Depositor

Jeffrey Tabor

Article

Butcher et al Proc Natl Acad Sci U S A. 2022 Aug 30;11

Insert

NarL-mNG; mCherry; tetR (AX04_RS23485, narL Synthetic, narL - E. coli)

Use

Tags

mNeonGreen

Expression

Bacterial

Mutation

Promoter

NarL-mNG-PLtetO-1; mCherry-PdcuS; tetR-J23106

Available since

Oct. 26, 2022

Availability

Academic Institutions and Nonprofits only

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pKD317.8

Plasmid

#181951

Purpose

IPTG-inducible expression of NarX

Depositor

Jeffrey Tabor

Article

Butcher et al Proc Natl Acad Sci U S A. 2022 Aug 30;11

Insert

NarX; lacI (narX, lacI NarX - E. coli; lacI - E. coli)

Use

Tags

Expression

Bacterial

Mutation

Promoter

NarX-Ptac; lacI-PlacIq

Available since

Oct. 26, 2022

Availability

Academic Institutions and Nonprofits only

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pJ

Plasmid

#67965

Purpose

Indicuble TraJ expression with arabinose.

Depositor

Joshua Leonard

Insert

TraJ

Use

Synthetic Biology

Tags

FLAG

Expression

Mutation

Promoter

pBAD

Available since

Feb. 11, 2021

Availability

Academic Institutions and Nonprofits only

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pJaM

Plasmid

#67966

Purpose

Inducible TraJ, TraM expression with arabinose.

Depositor

Joshua Leonard

Insert

TraM, TraJ

Use

Synthetic Biology

Tags

Expression

Mutation

Promoter

pBAD

Available since

Feb. 11, 2021

Availability

Academic Institutions and Nonprofits only

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pShuttle

Plasmid

#67964

Purpose

Mobilizible plasmid with EGFP. OriT from the F plasmid.

Depositor

Joshua Leonard

Insert

OriT

Use

Synthetic Biology

Tags

Expression

Mutation

Promoter

Available since

Feb. 11, 2021

Availability

Academic Institutions and Nonprofits only

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pLNKR1

Plasmid

#67968

Purpose

High copy number plasmid encoding part of the tra Operon PY-traR

Depositor

Joshua Leonard

Insert

tra Operon (First Quarter)

Use

Synthetic Biology

Tags

Expression

Mutation

Promoter

Available since

Feb. 11, 2021

Availability

Academic Institutions and Nonprofits only

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pLNKR2

Plasmid

#67969

Purpose

High copy number plasmid encoding part of the tra Operon traC-artA

Depositor

Joshua Leonard

Insert

tra Operon (second Quarter)

Use

Synthetic Biology

Tags

Expression

Mutation

Promoter

Available since

Feb. 11, 2021

Availability

Academic Institutions and Nonprofits only

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CrBlue-mcherry - pcDNA3.1

Plasmid

#64204

Purpose

CrBlue fused to mcherry on the C terminus

Depositor

Narasimhan Gautam

Article

Karunarathne et al Proc Natl Acad Sci U S A. 2013 Apr 23;11

Insert

CrBlue

Use

Tags

mcherry

Expression

Mammalian

Mutation

Promoter

CMV

Available since

April 13, 2015

Availability

Academic Institutions and Nonprofits only
pDB1751

Plasmid

#174013

Purpose

pDUAL plasmid expressing GFP from 41nmt1 promoter

Depositor

Li-Lin Du

Article

Yu et al J Cell Sci. 2021 Oct 1;134(19):jcs258774

Insert

GFP

Use

Tags

GFP

Expression

Yeast

Mutation

Promoter

41nmt1 and 41nmt1 promoter

Available since

Sept. 7, 2021

Availability

Academic Institutions and Nonprofits only

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Venus-Gprotein Gamma 9

Plasmid

#42201

Depositor

Narasimhan Gautam

Article

Ajith Karunarathne et al Biochem Biophys Res Commun. 2012 May 11;

Insert

G protein Gamma 9

Use

Tags

Venus(1-155)

Expression

Mammalian

Mutation

Promoter

CMV

Available since

March 22, 2013

Availability

Academic Institutions and Nonprofits only
pDB4924

Plasmid

#174012

Purpose

pDUAL plasmid expressing Pil1-mCherry from 41nmt1 promoter

Depositor

Li-Lin Du

Article

Yu et al J Cell Sci. 2021 Oct 1;134(19):jcs258774

Insert

Pil1-mCherry

Use

Tags

Pil1, mCherry

Expression

Yeast

Mutation

Promoter

41nmt1 and 41nmt1p

Available since

Sept. 2, 2021

Availability

Academic Institutions and Nonprofits only

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