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piRFP670-N1 Citations (42)

Originally described in: Near-infrared fluorescent proteins for multicolor in vivo imaging.
Shcherbakova DM, Verkhusha VV Nat Methods. 2013 Jun 16. doi: 10.1038/nmeth.2521. PubMed Journal

Articles Citing piRFP670-N1

Articles
Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification. Guilinger JP, Thompson DB, Liu DR. Nat Biotechnol. 2014 Apr 25. doi: 10.1038/nbt.2909. PubMed

Associated Plasmids
Dynamic mechanisms of neuroligin-dependent presynaptic terminal assembly in living cortical neurons. Bury LA, Sabo SL. Neural Dev. 2014 May 29;9:13. doi: 10.1186/1749-8104-9-13. PubMed
Small molecule-triggered Cas9 protein with improved genome-editing specificity. Davis KM, Pattanayak V, Thompson DB, Zuris JA, Liu DR. Nat Chem Biol. 2015 May;11(5):316-8. doi: 10.1038/nchembio.1793. Epub 2015 Apr 6. PubMed

Associated Plasmids
Optogenetic control of endogenous Ca channels in vivo. Kyung T, Lee S, Kim JE, Cho T, Park H, Jeong YM, Kim D, Shin A, Kim S, Baek J, Kim J, Kim NY, Woo D, Chae S, Kim CH, Shin HS, Han YM, Kim D, Heo WD. Nat Biotechnol. 2015 Sep 14. doi: 10.1038/nbt.3350. PubMed

Associated Plasmids
Nuclear domain 'knock-in' screen for the evaluation and identification of small molecule enhancers of CRISPR-based genome editing. Pinder J, Salsman J, Dellaire G. Nucleic Acids Res. 2015 Oct 30;43(19):9379-92. doi: 10.1093/nar/gkv993. Epub 2015 Oct 1. PubMed

Associated Plasmids
A novel imaging method for quantitative Golgi localization reveals differential intra-Golgi trafficking of secretory cargos. Tie HC, Mahajan D, Chen B, Cheng L, VanDongen AM, Lu L. Mol Biol Cell. 2016 Jan 13. pii: mbc.E15-09-0664. PubMed

Associated Plasmids
Optogenetic Control of Fibroblast Growth Factor Receptor Signaling. Kim N, Kim JM, Heo WD. Methods Mol Biol. 2016;1408:345-62. doi: 10.1007/978-1-4939-3512-3_24. PubMed
Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. Komor AC, Kim YB, Packer MS, Zuris JA, Liu DR. Nature. 2016 Apr 20. doi: 10.1038/nature17946. PubMed

Associated Plasmids
A programmable Cas9-serine recombinase fusion protein that operates on DNA sequences in mammalian cells. Chaikind B, Bessen JL, Thompson DB, Hu JH, Liu DR. Nucleic Acids Res. 2016 Aug 11. pii: gkw707. PubMed

Associated Plasmids
Cpf1 nucleases demonstrate robust activity to induce DNA modification by exploiting homology directed repair pathways in mammalian cells. Toth E, Weinhardt N, Bencsura P, Huszar K, Kulcsar PI, Talas A, Fodor E, Welker E. Biol Direct. 2016 Sep 14;11:46. doi: 10.1186/s13062-016-0147-0. PubMed

Associated Plasmids
Synthetic mRNA devices that detect endogenous proteins and distinguish mammalian cells. Kawasaki S, Fujita Y, Nagaike T, Tomita K, Saito H. Nucleic Acids Res. 2017 May 19. doi: 10.1093/nar/gkx298. PubMed

Associated Plasmids
Systematic comparison of 2A peptides for cloning multi-genes in a polycistronic vector. Liu Z, Chen O, Wall JBJ, Zheng M, Zhou Y, Wang L, Ruth Vaseghi H, Qian L, Liu J. Sci Rep. 2017 May 19;7(1):2193. doi: 10.1038/s41598-017-02460-2. PubMed

Associated Plasmids
An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z beta as an Essential Regulator of Spindle Orientation. di Pietro F, Valon L, Li Y, Goiame R, Genovesio A, Morin X. Curr Biol. 2017 Aug 21;27(16):2452-2464.e8. doi: 10.1016/j.cub.2017.06.055. Epub 2017 Aug 10. PubMed
EHD Proteins Cooperate to Generate Caveolar Clusters and to Maintain Caveolae during Repeated Mechanical Stress. Yeow I, Howard G, Chadwick J, Mendoza-Topaz C, Hansen CG, Nichols BJ, Shvets E. Curr Biol. 2017 Oct 9;27(19):2951-2962.e5. doi: 10.1016/j.cub.2017.07.047. Epub 2017 Sep 21. PubMed
The Laminar Organization of Piriform Cortex Follows a Selective Developmental and Migratory Program Established by Cell Lineage. Martin-Lopez E, Ishiguro K, Greer CA. Cereb Cortex. 2017 Nov 9:1-16. doi: 10.1093/cercor/bhx291. PubMed
Microglia remodel synapses by presynaptic trogocytosis and spine head filopodia induction. Weinhard L, di Bartolomei G, Bolasco G, Machado P, Schieber NL, Neniskyte U, Exiga M, Vadisiute A, Raggioli A, Schertel A, Schwab Y, Gross CT. Nat Commun. 2018 Mar 26;9(1):1228. doi: 10.1038/s41467-018-03566-5. PubMed
Filopodia Conduct Target Selection in Cortical Neurons Using Differences in Signal Kinetics of a Single Kinase. Mao YT, Zhu JX, Hanamura K, Iurilli G, Datta SR, Dalva MB. Neuron. 2018 May 16;98(4):767-782.e8. doi: 10.1016/j.neuron.2018.04.011. Epub 2018 May 3. PubMed
The actin cytoskeletal architecture of estrogen receptor positive breast cancer cells suppresses invasion. Padilla-Rodriguez M, Parker SS, Adams DG, Westerling T, Puleo JI, Watson AW, Hill SM, Noon M, Gaudin R, Aaron J, Tong D, Roe DJ, Knudsen B, Mouneimne G. Nat Commun. 2018 Jul 30;9(1):2980. doi: 10.1038/s41467-018-05367-2. PubMed

Associated Plasmids
3 minutes to precisely measure morphogen concentration. Lucas T, Tran H, Perez Romero CA, Guillou A, Fradin C, Coppey M, Walczak AM, Dostatni N. PLoS Genet. 2018 Oct 26;14(10):e1007676. doi: 10.1371/journal.pgen.1007676. eCollection 2018 Oct. PubMed
Combining near-infrared fluorescence with Brainbow to visualize expression of specific genes within a multicolor context. Cook ZT, Brockway NL, Tobias ZJC, Pajarla J, Boardman IS, Ippolito H, Nkombo Nkoula S, Weissman TA. Mol Biol Cell. 2019 Feb 15;30(4):491-505. doi: 10.1091/mbc.E18-06-0340. Epub 2018 Dec 26. PubMed
LC3/GABARAPs drive ubiquitin-independent recruitment of Optineurin and NDP52 to amplify mitophagy. Padman BS, Nguyen TN, Uoselis L, Skulsuppaisarn M, Nguyen LK, Lazarou M. Nat Commun. 2019 Jan 24;10(1):408. doi: 10.1038/s41467-019-08335-6. PubMed

Associated Plasmids
Reducible branched ester-amine quadpolymers (rBEAQs) co-delivering plasmid DNA and RNA oligonucleotides enable CRISPR/Cas9 genome editing. Rui Y, Wilson D, Sanders K, Green JJ. ACS Appl Mater Interfaces. 2019 Feb 22. doi: 10.1021/acsami.8b20206. PubMed

Associated Plasmids
Insulin Induces Microtubule Stabilization and Regulates the Microtubule Plus-end Tracking Protein Network in Adipocytes. Parker SS, Krantz J, Kwak EA, Barker NK, Deer CG, Lee NY, Mouneimne G, Langlais PR. Mol Cell Proteomics. 2019 Jul;18(7):1363-1381. doi: 10.1074/mcp.RA119.001450. Epub 2019 Apr 24. PubMed
Engineering antigen-specific NK cell lines against the melanoma-associated antigen tyrosinase via TCR gene transfer. Parlar A, Sayitoglu EC, Ozkazanc D, Georgoudaki AM, Pamukcu C, Aras M, Josey BJ, Chrobok M, Branecki S, Zahedimaram P, Ikromzoda L, Alici E, Erman B, Duru AD, Sutlu T. Eur J Immunol. 2019 Aug;49(8):1278-1290. doi: 10.1002/eji.201948140. Epub 2019 May 17. PubMed
Cell-Type-Specific CRISPR Activation with MicroRNA-Responsive AcrllA4 Switch. Hirosawa M, Fujita Y, Saito H. ACS Synth Biol. 2019 Jul 19;8(7):1575-1582. doi: 10.1021/acssynbio.9b00073. Epub 2019 Jul 9. PubMed
High specificity of widely used phospho-tau antibodies validated using a quantitative whole-cell based assay. Li D, Cho YK. J Neurochem. 2020 Jan;152(1):122-135. doi: 10.1111/jnc.14830. Epub 2019 Sep 4. PubMed
PML isoform expression and DNA break location relative to PML nuclear bodies impacts the efficiency of homologous recombination. Attwood KM, Salsman J, Chung D, Mathavarajah S, Van Iderstine C, Dellaire G. Biochem Cell Biol. 2019 Oct 31. doi: 10.1139/bcb-2019-0115. PubMed
TraFo-CRISPR: Enhanced Genome Engineering by Transient Foamy Virus Vector-Mediated Delivery of CRISPR/Cas9 Components. Lindel F, Dodt CR, Weidner N, Noll M, Bergemann F, Behrendt R, Fischer S, Dietrich J, Cartellieri M, Hamann MV, Lindemann D. Mol Ther Nucleic Acids. 2019 Dec 6;18:708-726. doi: 10.1016/j.omtn.2019.10.006. Epub 2019 Oct 17. PubMed
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Anti-tumor effect of a recombinant Bifidobacterium strain secreting a claudin-targeting molecule in a mouse breast cancer model. Shimizu Y, Isoda K, Taira Y, Taira I, Kondoh M, Ishida I. Eur J Pharmacol. 2020 Nov 15;887:173596. doi: 10.1016/j.ejphar.2020.173596. Epub 2020 Sep 28. PubMed
Drp1 Tubulates the ER in a GTPase-Independent Manner. Adachi Y, Kato T, Yamada T, Murata D, Arai K, Stahelin RV, Chan DC, Iijima M, Sesaki H. Mol Cell. 2020 Nov 19;80(4):621-632.e6. doi: 10.1016/j.molcel.2020.10.013. Epub 2020 Nov 4. PubMed
Optimized Vivid-derived Magnets photodimerizers for subcellular optogenetics in mammalian cells. Benedetti L, Marvin JS, Falahati H, Guillen-Samander A, Looger LL, De Camilli P. Elife. 2020 Nov 11;9. pii: 63230. doi: 10.7554/eLife.63230. PubMed

Associated Plasmids
Self-assembled miRNA-switch nanoparticles target denuded regions and prevent restenosis. Lockhart JH, VanWye J, Banerjee R, Wickline SA, Pan H, Totary-Jain H. Mol Ther. 2021 May 5;29(5):1744-1757. doi: 10.1016/j.ymthe.2021.01.032. Epub 2021 Feb 3. PubMed
Non-canonical Hedgehog signaling regulates spinal cord and muscle regeneration in Xenopus laevis larvae. Hamilton AM, Balashova OA, Borodinsky LN. Elife. 2021 May 6;10. pii: 61804. doi: 10.7554/eLife.61804. PubMed
A fast, aqueous, reversible three-day tissue clearing method for adult and embryonic mouse brain and whole body. Kosmidis S, Negrean A, Dranovsky A, Losonczy A, Kandel ER. Cell Rep Methods. 2021 Nov 22;1(7):100090. doi: 10.1016/j.crmeth.2021.100090. Epub 2021 Oct 11. PubMed
A versatile and robust cell purification system with an RNA-only circuit composed of microRNA-responsive ON and OFF switches. Fujita Y, Hirosawa M, Hayashi K, Hatani T, Yoshida Y, Yamamoto T, Saito H. Sci Adv. 2022 Jan 7;8(1):eabj1793. doi: 10.1126/sciadv.abj1793. Epub 2022 Jan 5. PubMed
Translational recoding by chemical modification of non-AUG start codon ribonucleotide bases. Fujita Y, Kameda T, Singh CR, Pepper W, Cecil A, Hilgers M, Thornton M, Asano I, Moravek C, Togashi Y, Saito H, Asano K. Sci Adv. 2022 Apr 8;8(14):eabm8501. doi: 10.1126/sciadv.abm8501. Epub 2022 Apr 8. PubMed
Coordination chemogenetics for activation of GPCR-type glutamate receptors in brain tissue. Ojima K, Kakegawa W, Yamasaki T, Miura Y, Itoh M, Michibata Y, Kubota R, Doura T, Miura E, Nonaka H, Mizuno S, Takahashi S, Yuzaki M, Hamachi I, Kiyonaka S. Nat Commun. 2022 Jun 16;13(1):3167. doi: 10.1038/s41467-022-30828-0. PubMed
Polarized NHE1 and SWELL1 regulate migration direction, efficiency and metastasis. Zhang Y, Li Y, Thompson KN, Stoletov K, Yuan Q, Bera K, Lee SJ, Zhao R, Kiepas A, Wang Y, Mistriotis P, Serra SA, Lewis JD, Valverde MA, Martin SS, Sun SX, Konstantopoulos K. Nat Commun. 2022 Oct 17;13(1):6128. doi: 10.1038/s41467-022-33683-1. PubMed
Two-Photon Excitation Spectra of Various Fluorescent Proteins within a Broad Excitation Range. Leben R, Lindquist RL, Hauser AE, Niesner R, Rakhymzhan A. Int J Mol Sci. 2022 Nov 2;23(21):13407. doi: 10.3390/ijms232113407. PubMed
EVL and MIM/MTSS1 regulate actin cytoskeletal remodeling to promote dendritic filopodia in neurons. Parker SS, Ly KT, Grant AD, Sweetland J, Wang AM, Parker JD, Roman MR, Saboda K, Roe DJ, Padi M, Wolgemuth CW, Langlais P, Mouneimne G. J Cell Biol. 2023 May 1;222(5):e202106081. doi: 10.1083/jcb.202106081. Epub 2023 Feb 24. PubMed
A single-shot hyperspectral phasor camera for fast, multi-color fluorescence microscopy. Wang P, Kitano M, Keomanee-Dizon K, Truong TV, Fraser SE, Cutrale F. Cell Rep Methods. 2023 Mar 31;3(4):100441. doi: 10.1016/j.crmeth.2023.100441. eCollection 2023 Apr 24. PubMed

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